Wall clock time and date at job start Mon Mar 30 2020 00:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47139 * 2 1 4 4 N 1.28594 * 124.61903 * 90.02780 * 3 2 1 5 5 C 1.31379 * 108.71955 * 179.97438 * 4 3 2 6 6 C 1.50703 * 127.05106 * 180.02562 * 5 4 3 7 7 C 1.39671 * 105.90152 * 359.97438 * 5 4 3 8 8 C 1.50696 * 127.05455 * 180.02562 * 7 5 4 9 9 N 1.46906 * 109.46951 * 71.45654 * 8 7 5 10 10 C 1.46896 * 111.00109 * 201.87042 * 9 8 7 11 11 C 1.50696 * 109.47588 * 164.24003 * 10 9 8 12 12 H 1.08003 * 119.99803 * 4.88796 * 11 10 9 13 13 C 1.37876 * 120.00419 * 184.87862 * 11 10 9 14 14 N 1.31516 * 120.00252 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00052 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.47069 * 89.99447 * 15 13 11 17 17 H 1.48497 * 109.47509 * 209.99594 * 15 13 11 18 18 H 1.48506 * 109.47224 * 329.99858 * 15 13 11 19 19 C 1.46899 * 111.00253 * 77.91349 * 9 8 7 20 20 C 1.52998 * 109.47024 * 286.88490 * 19 9 8 21 21 C 1.52999 * 109.46941 * 46.88370 * 19 9 8 22 22 N 1.28601 * 124.61624 * 269.98380 * 3 2 1 23 23 H 1.08994 * 109.47489 * 60.00238 * 1 2 3 24 24 H 1.09003 * 109.47176 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46817 * 299.99589 * 1 2 3 26 26 H 1.09010 * 109.47131 * 239.99814 * 2 1 3 27 27 H 1.08997 * 109.47359 * 120.00279 * 2 1 3 28 28 H 1.09000 * 109.46642 * 89.98008 * 6 5 4 29 29 H 1.09002 * 109.46977 * 209.97469 * 6 5 4 30 30 H 1.08997 * 109.47372 * 329.98168 * 6 5 4 31 31 H 1.09004 * 109.47350 * 191.45399 * 8 7 5 32 32 H 1.08999 * 109.47244 * 311.45844 * 8 7 5 33 33 H 1.09008 * 109.46959 * 284.24038 * 10 9 8 34 34 H 1.08996 * 109.47500 * 44.23743 * 10 9 8 35 35 H 0.96994 * 120.00509 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47496 * 166.88705 * 19 9 8 37 37 H 1.09001 * 109.47180 * 70.08844 * 20 19 9 38 38 H 1.09000 * 109.47008 * 190.08129 * 20 19 9 39 39 H 1.08993 * 109.47101 * 310.08656 * 20 19 9 40 40 H 1.09005 * 109.47408 * 51.86896 * 21 19 9 41 41 H 1.09004 * 109.47103 * 171.86458 * 21 19 9 42 42 H 1.09003 * 109.47487 * 291.86640 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2623 2.0698 1.0583 5 6 2.6839 3.2609 0.6983 6 6 3.0859 4.3945 1.6063 7 6 2.6841 3.2609 -0.6984 8 6 3.0860 4.3944 -1.6064 9 7 4.5429 4.5744 -1.5496 10 6 4.9230 5.9285 -1.9735 11 6 6.3404 6.2096 -1.5457 12 1 6.9291 5.4314 -1.0827 13 6 6.8857 7.4601 -1.7453 14 7 8.1224 7.7055 -1.3715 15 14 5.8673 8.8062 -2.5456 16 1 5.1379 9.5644 -1.4975 17 1 6.7625 9.7276 -3.2904 18 1 4.8918 8.1968 -3.4849 19 6 5.2308 3.5576 -2.3564 20 6 5.1598 2.2063 -1.6425 21 6 4.5538 3.4481 -3.7241 22 7 2.2621 2.0699 -1.0584 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 4.1515 4.3245 1.8248 29 1 2.8774 5.3450 1.1151 30 1 2.5197 4.3340 2.5358 31 1 2.7880 4.1638 -2.6292 32 1 2.5938 5.3114 -1.2825 33 1 4.8493 6.0037 -3.0585 34 1 4.2536 6.6549 -1.5127 35 1 8.5060 8.5854 -1.5116 36 1 6.2741 3.8439 -2.4893 37 1 4.1352 1.8352 -1.6681 38 1 5.8162 1.4954 -2.1442 39 1 5.4772 2.3255 -0.6066 40 1 4.4753 4.4391 -4.1712 41 1 5.1469 2.8030 -4.3724 42 1 3.5569 3.0241 -3.6032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823409258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:46 Heat of formation + Delta-G solvation = 117.659527 kcal Electronic energy + Delta-G solvation = -21364.369844 eV Core-core repulsion = 18382.779678 eV Total energy + Delta-G solvation = -2981.590167 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.28524 -37.95676 -35.00536 -32.82962 -32.43589 -31.70133 -30.79714 -28.32801 -27.42377 -26.65442 -25.24180 -23.05156 -21.72730 -20.95729 -20.62329 -18.79554 -17.04274 -16.65362 -16.38581 -15.25255 -14.76825 -14.54843 -14.26620 -13.73740 -13.52953 -13.23580 -12.98631 -12.80757 -12.74512 -12.37160 -12.35940 -12.25142 -11.89586 -11.64917 -11.58664 -11.33413 -11.05786 -10.83708 -10.64228 -10.55303 -10.39514 -10.35897 -10.05265 -9.88888 -9.40951 -9.23292 -8.55878 -8.50512 -7.30461 -6.01322 -3.97791 2.07807 2.47878 2.76534 3.30405 3.38466 3.39619 4.22439 4.44796 4.66167 4.72015 4.91055 4.94966 5.15508 5.23382 5.31830 5.45764 5.50066 5.61927 5.63760 5.74967 5.82266 5.94928 5.99565 6.07734 6.13976 6.17669 6.27742 6.34287 6.41472 6.48149 6.56115 6.71107 6.76145 6.81694 6.97417 7.06745 7.09007 7.64461 7.96748 8.09355 8.68591 8.70261 9.09053 9.60535 11.11993 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.029066 B = 0.005226 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.077246 B = 5356.664510 C = 5656.447159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.142 3.858 3 N -0.167 5.167 4 N -0.302 5.302 5 C 0.026 3.974 6 C -0.057 4.057 7 C 0.034 3.966 8 C 0.126 3.874 9 N -0.512 5.512 10 C 0.162 3.838 11 C -0.503 4.503 12 H 0.080 0.920 13 C 0.069 3.931 14 N -0.901 5.901 15 Si 0.872 3.128 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.268 1.268 19 C 0.085 3.915 20 C -0.152 4.152 21 C -0.182 4.182 22 N -0.292 5.292 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.084 0.916 33 H -0.008 1.008 34 H 0.024 0.976 35 H 0.263 0.737 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.205 -12.774 1.254 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.022 3.978 3 N -0.067 5.067 4 N -0.145 5.145 5 C -0.137 4.137 6 C -0.116 4.116 7 C -0.129 4.129 8 C -0.005 4.005 9 N -0.236 5.236 10 C 0.036 3.964 11 C -0.541 4.541 12 H 0.098 0.902 13 C -0.133 4.133 14 N -0.540 5.540 15 Si 0.700 3.300 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.193 1.193 19 C -0.023 4.023 20 C -0.210 4.210 21 C -0.240 4.240 22 N -0.134 5.134 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.010 0.990 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.391 -14.018 1.753 20.166 hybrid contribution -0.331 1.635 -1.264 2.093 sum -14.722 -12.383 0.488 19.244 Atomic orbital electron populations 1.22167 0.93702 1.03353 1.03507 1.21787 0.95533 0.75279 1.05220 1.47773 1.46474 1.12923 0.99529 1.73923 1.19263 1.05474 1.15817 1.23012 1.02723 0.93914 0.94078 1.19998 1.02267 0.93048 0.96276 1.22962 1.02445 0.93569 0.93928 1.20396 0.91511 0.92787 0.95767 1.62066 1.02351 1.04744 1.54421 1.20219 0.97698 0.84677 0.93764 1.21002 0.95595 0.98202 1.39314 0.90171 1.24875 0.94823 0.98191 0.95373 1.69891 1.13860 1.22385 1.47910 0.86910 0.80536 0.82482 0.80085 1.20148 1.21360 1.19308 1.21564 0.99674 0.91521 0.89572 1.22144 1.02021 0.96312 1.00474 1.22441 1.00931 1.01571 0.99093 1.73864 1.18505 1.05294 1.15755 0.91570 0.90062 0.91594 0.87906 0.87906 0.89794 0.90191 0.91880 0.92685 0.89754 0.99027 0.95752 0.92743 0.88935 0.91622 0.94036 0.92854 0.92569 0.93038 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.24 37.16 0.38 -0.92 16 2 C 0.14 1.33 7.26 -4.04 -0.03 1.30 16 3 N -0.17 -2.42 3.95 -10.62 -0.04 -2.46 16 4 N -0.30 -4.86 12.05 33.71 0.41 -4.45 16 5 C 0.03 0.43 7.35 -82.25 -0.60 -0.18 16 6 C -0.06 -0.85 10.34 36.01 0.37 -0.48 16 7 C 0.03 0.58 4.90 -82.25 -0.40 0.18 16 8 C 0.13 2.20 5.15 -4.97 -0.03 2.18 16 9 N -0.51 -10.40 4.35 -229.52 -1.00 -11.40 16 10 C 0.16 3.77 3.71 -4.98 -0.02 3.75 16 11 C -0.50 -13.89 9.00 -34.44 -0.31 -14.20 16 12 H 0.08 2.45 7.73 -52.48 -0.41 2.04 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 15 Si 0.87 21.06 27.37 -169.99 -4.65 16.40 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.22 6.69 56.52 0.38 -5.84 16 19 C 0.09 1.66 2.76 -67.71 -0.19 1.47 16 20 C -0.15 -2.72 8.37 37.16 0.31 -2.40 16 21 C -0.18 -3.10 8.11 37.16 0.30 -2.80 16 22 N -0.29 -4.70 9.89 33.71 0.33 -4.36 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.94 5.32 -51.93 -0.28 0.66 16 32 H 0.08 1.40 7.61 -51.93 -0.40 1.00 16 33 H -0.01 -0.18 6.00 -51.92 -0.31 -0.50 16 34 H 0.02 0.56 6.82 -51.93 -0.35 0.20 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.09 2.04 6.95 -51.93 -0.36 1.68 16 37 H 0.07 1.14 4.42 -51.93 -0.23 0.91 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.00 6.68 -51.93 -0.35 0.65 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.91 6.40 -51.93 -0.33 0.58 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -31.52 330.90 -6.32 -37.85 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.82 Total: 0.20 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.31 Total: -10.25 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.47 Total: -49.19 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.65 Total: 16.40 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.52 -6.32 -37.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823409258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.507 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds