Wall clock time and date at job start Mon Mar 30 2020 00:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47139 * 2 1 4 4 N 1.28594 * 124.61903 * 90.02780 * 3 2 1 5 5 C 1.31379 * 108.71955 * 179.97438 * 4 3 2 6 6 C 1.50703 * 127.05106 * 180.02562 * 5 4 3 7 7 C 1.39671 * 105.90152 * 359.97438 * 5 4 3 8 8 C 1.50696 * 127.05455 * 180.02562 * 7 5 4 9 9 N 1.46906 * 109.46951 * 71.45654 * 8 7 5 10 10 C 1.46896 * 111.00109 * 201.87042 * 9 8 7 11 11 C 1.50696 * 109.47588 * 164.24003 * 10 9 8 12 12 H 1.08003 * 119.99803 * 4.88796 * 11 10 9 13 13 C 1.37876 * 120.00419 * 184.87862 * 11 10 9 14 14 N 1.31516 * 120.00252 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00052 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.47069 * 89.99447 * 15 13 11 17 17 H 1.48497 * 109.47509 * 209.99594 * 15 13 11 18 18 H 1.48506 * 109.47224 * 329.99858 * 15 13 11 19 19 C 1.46899 * 111.00253 * 77.91349 * 9 8 7 20 20 C 1.52998 * 109.47024 * 286.88490 * 19 9 8 21 21 C 1.52999 * 109.46941 * 46.88370 * 19 9 8 22 22 N 1.28601 * 124.61624 * 269.98380 * 3 2 1 23 23 H 1.08994 * 109.47489 * 60.00238 * 1 2 3 24 24 H 1.09003 * 109.47176 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46817 * 299.99589 * 1 2 3 26 26 H 1.09010 * 109.47131 * 239.99814 * 2 1 3 27 27 H 1.08997 * 109.47359 * 120.00279 * 2 1 3 28 28 H 1.09000 * 109.46642 * 89.98008 * 6 5 4 29 29 H 1.09002 * 109.46977 * 209.97469 * 6 5 4 30 30 H 1.08997 * 109.47372 * 329.98168 * 6 5 4 31 31 H 1.09004 * 109.47350 * 191.45399 * 8 7 5 32 32 H 1.08999 * 109.47244 * 311.45844 * 8 7 5 33 33 H 1.09008 * 109.46959 * 284.24038 * 10 9 8 34 34 H 1.08996 * 109.47500 * 44.23743 * 10 9 8 35 35 H 0.96994 * 120.00509 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47496 * 166.88705 * 19 9 8 37 37 H 1.09001 * 109.47180 * 70.08844 * 20 19 9 38 38 H 1.09000 * 109.47008 * 190.08129 * 20 19 9 39 39 H 1.08993 * 109.47101 * 310.08656 * 20 19 9 40 40 H 1.09005 * 109.47408 * 51.86896 * 21 19 9 41 41 H 1.09004 * 109.47103 * 171.86458 * 21 19 9 42 42 H 1.09003 * 109.47487 * 291.86640 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2623 2.0698 1.0583 5 6 2.6839 3.2609 0.6983 6 6 3.0859 4.3945 1.6063 7 6 2.6841 3.2609 -0.6984 8 6 3.0860 4.3944 -1.6064 9 7 4.5429 4.5744 -1.5496 10 6 4.9230 5.9285 -1.9735 11 6 6.3404 6.2096 -1.5457 12 1 6.9291 5.4314 -1.0827 13 6 6.8857 7.4601 -1.7453 14 7 8.1224 7.7055 -1.3715 15 14 5.8673 8.8062 -2.5456 16 1 5.1379 9.5644 -1.4975 17 1 6.7625 9.7276 -3.2904 18 1 4.8918 8.1968 -3.4849 19 6 5.2308 3.5576 -2.3564 20 6 5.1598 2.2063 -1.6425 21 6 4.5538 3.4481 -3.7241 22 7 2.2621 2.0699 -1.0584 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 4.1515 4.3245 1.8248 29 1 2.8774 5.3450 1.1151 30 1 2.5197 4.3340 2.5358 31 1 2.7880 4.1638 -2.6292 32 1 2.5938 5.3114 -1.2825 33 1 4.8493 6.0037 -3.0585 34 1 4.2536 6.6549 -1.5127 35 1 8.5060 8.5854 -1.5116 36 1 6.2741 3.8439 -2.4893 37 1 4.1352 1.8352 -1.6681 38 1 5.8162 1.4954 -2.1442 39 1 5.4772 2.3255 -0.6066 40 1 4.4753 4.4391 -4.1712 41 1 5.1469 2.8030 -4.3724 42 1 3.5569 3.0241 -3.6032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823409258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:46 Heat of formation + Delta-G solvation = 96.056076 kcal Electronic energy + Delta-G solvation = -21365.306640 eV Core-core repulsion = 18382.779678 eV Total energy + Delta-G solvation = -2982.526962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.48551 -39.51045 -35.99866 -34.82085 -33.73990 -32.96087 -32.28886 -29.92129 -28.62767 -28.08437 -26.77279 -24.01899 -23.58096 -22.27916 -21.80495 -20.32999 -18.78815 -18.05791 -17.64512 -16.78121 -16.29623 -15.98022 -15.54861 -15.14729 -14.76487 -14.62568 -14.46303 -14.23003 -14.07816 -13.88375 -13.45213 -13.34406 -13.17312 -12.98508 -12.81016 -12.68919 -12.37175 -12.36893 -12.23551 -12.06655 -11.87113 -11.83488 -11.68170 -11.49811 -11.39902 -10.72210 -10.65205 -9.74714 -8.90809 -8.20121 -6.22095 0.87282 1.41284 1.41985 1.45594 1.52853 1.53263 2.41282 3.05885 3.14295 3.43753 3.84595 3.98650 4.01357 4.11046 4.21644 4.23218 4.29789 4.46937 4.50787 4.58814 4.70987 4.74879 4.75865 4.77828 4.86697 4.91068 4.93914 5.01731 5.05820 5.09916 5.14525 5.16549 5.29324 5.38860 5.47126 5.51222 5.62591 5.93978 6.08590 6.45561 6.72861 6.84053 7.40634 7.46344 8.96922 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.029066 B = 0.005226 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.077246 B = 5356.664510 C = 5656.447159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 N -0.157 5.157 4 N -0.310 5.310 5 C 0.007 3.993 6 C -0.053 4.053 7 C 0.016 3.984 8 C 0.130 3.870 9 N -0.524 5.524 10 C 0.173 3.827 11 C -0.505 4.505 12 H 0.033 0.967 13 C 0.008 3.992 14 N -0.952 5.952 15 Si 0.945 3.055 16 H -0.263 1.263 17 H -0.288 1.288 18 H -0.248 1.248 19 C 0.084 3.916 20 C -0.138 4.138 21 C -0.171 4.171 22 N -0.293 5.293 23 H 0.054 0.946 24 H 0.114 0.886 25 H 0.054 0.946 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.094 0.906 33 H -0.005 1.005 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.029 0.971 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.862 -13.620 0.386 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 N -0.058 5.058 4 N -0.153 5.153 5 C -0.154 4.154 6 C -0.112 4.112 7 C -0.145 4.145 8 C 0.000 4.000 9 N -0.248 5.248 10 C 0.047 3.953 11 C -0.543 4.543 12 H 0.051 0.949 13 C -0.189 4.189 14 N -0.593 5.593 15 Si 0.768 3.232 16 H -0.188 1.188 17 H -0.214 1.214 18 H -0.171 1.171 19 C -0.025 4.025 20 C -0.196 4.196 21 C -0.229 4.229 22 N -0.137 5.137 23 H 0.073 0.927 24 H 0.132 0.868 25 H 0.073 0.927 26 H 0.139 0.861 27 H 0.138 0.862 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.012 0.988 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.069 -14.887 0.888 22.666 hybrid contribution 0.517 1.696 -0.926 2.000 sum -16.552 -13.191 -0.038 21.165 Atomic orbital electron populations 1.22121 0.92166 1.05167 1.02339 1.22358 0.96800 0.73088 1.07005 1.48380 1.44790 1.13934 0.98742 1.73905 1.19455 1.05461 1.16483 1.23235 1.03295 0.94569 0.94322 1.19975 1.01402 0.92791 0.97065 1.22830 1.03762 0.93959 0.93986 1.20369 0.89282 0.93771 0.96556 1.61921 1.04548 1.03470 1.54901 1.19970 0.95009 0.86710 0.93659 1.21203 0.97547 0.97123 1.38464 0.94916 1.25800 0.95953 1.01032 0.96076 1.70060 1.16119 1.23239 1.49925 0.85756 0.79034 0.78872 0.79526 1.18826 1.21396 1.17121 1.21506 0.97843 0.91845 0.91305 1.22019 1.02844 0.95808 0.98933 1.22316 1.01524 1.01614 0.97476 1.73799 1.18451 1.05077 1.16378 0.92673 0.86758 0.92707 0.86146 0.86181 0.91493 0.90062 0.89955 0.91747 0.88785 0.98766 0.94636 0.92659 0.92703 0.90606 0.92540 0.95216 0.93306 0.91494 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 10.24 71.98 0.74 -1.27 16 2 C 0.13 2.01 7.26 86.38 0.63 2.63 16 3 N -0.16 -4.21 3.95 -187.51 -0.74 -4.95 16 4 N -0.31 -9.52 12.05 -47.25 -0.57 -10.09 16 5 C 0.01 0.24 7.35 42.97 0.32 0.56 16 6 C -0.05 -1.58 10.34 71.24 0.74 -0.84 16 7 C 0.02 0.53 4.90 42.97 0.21 0.74 16 8 C 0.13 4.36 5.15 85.55 0.44 4.80 16 9 N -0.52 -21.27 4.35 -880.07 -3.83 -25.09 16 10 C 0.17 7.98 3.71 85.56 0.32 8.30 16 11 C -0.50 -28.75 9.00 25.60 0.23 -28.52 16 12 H 0.03 2.12 7.73 -2.91 -0.02 2.10 16 13 C 0.01 0.46 5.47 84.65 0.46 0.92 16 14 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 15 Si 0.94 43.17 27.37 68.60 1.88 45.05 16 16 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.25 -10.42 6.69 99.48 0.67 -9.76 16 19 C 0.08 3.25 2.76 44.91 0.12 3.38 16 20 C -0.14 -4.89 8.37 71.98 0.60 -4.29 16 21 C -0.17 -5.54 8.11 71.98 0.58 -4.96 16 22 N -0.29 -8.87 9.89 -47.25 -0.47 -9.33 16 23 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.08 2.32 8.11 -2.39 -0.02 2.30 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 2.04 5.32 -2.38 -0.01 2.03 16 32 H 0.09 2.94 7.61 -2.39 -0.02 2.92 16 33 H -0.01 -0.24 6.00 -2.38 -0.01 -0.26 16 34 H 0.04 1.57 6.82 -2.39 -0.02 1.55 16 35 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.05 2.53 6.95 -2.39 -0.02 2.51 16 37 H 0.08 2.53 4.42 -2.39 -0.01 2.52 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 1.65 6.68 -2.38 -0.02 1.63 16 41 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.07 2.06 6.40 -2.39 -0.02 2.05 16 Total: -1.00 -69.63 330.90 2.91 -66.72 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.95 Total: 15.46 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 5.39 Total: -18.54 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -5.31 Total: -108.68 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.05 kcal Total: -69.63 2.91 -66.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823409258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.772 kcal (2) G-P(sol) polarization free energy of solvation -69.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds