Wall clock time and date at job start Mon Mar 30 2020 00:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46510 * 109.47513 * 2 1 4 4 N 1.28602 * 124.61432 * 90.02297 * 3 2 1 5 5 C 1.31376 * 108.71495 * 179.97438 * 4 3 2 6 6 C 1.39675 * 105.90336 * 359.97438 * 5 4 3 7 7 C 1.50700 * 127.05499 * 179.74044 * 6 5 4 8 8 N 1.46901 * 109.47189 * 94.99906 * 7 6 5 9 9 C 1.46903 * 110.99773 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46752 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47228 * 299.99999 * 10 9 8 12 12 C 1.52999 * 109.47338 * 60.00065 * 10 9 8 13 13 C 1.53007 * 109.46898 * 180.02562 * 10 9 8 14 14 C 1.50703 * 109.46786 * 180.02562 * 13 10 9 15 15 H 1.08003 * 120.00298 * 0.02562 * 14 13 10 16 16 C 1.37882 * 119.99735 * 179.97438 * 14 13 10 17 17 N 1.31507 * 119.99980 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99844 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47235 * 89.99710 * 18 16 14 20 20 H 1.48503 * 109.47116 * 210.00055 * 18 16 14 21 21 H 1.48503 * 109.47050 * 329.99977 * 18 16 14 22 22 N 1.28593 * 124.62012 * 269.98849 * 3 2 1 23 23 H 1.08995 * 109.47411 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47437 * 300.00287 * 1 2 3 25 25 H 1.09005 * 109.47019 * 59.99934 * 1 2 3 26 26 H 1.09004 * 109.47082 * 240.00602 * 2 1 3 27 27 H 1.08994 * 109.47411 * 119.99897 * 2 1 3 28 28 H 1.07994 * 127.05191 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47182 * 215.00208 * 7 6 5 30 30 H 1.09000 * 109.46771 * 335.00164 * 7 6 5 31 31 H 1.00900 * 110.99966 * 56.04560 * 8 7 6 32 32 H 1.08997 * 109.47240 * 299.99722 * 9 8 7 33 33 H 1.09001 * 109.47285 * 59.99962 * 9 8 7 34 34 H 1.09000 * 109.47300 * 60.00290 * 11 10 9 35 35 H 1.09003 * 109.47140 * 180.02562 * 11 10 9 36 36 H 1.08997 * 109.47350 * 299.99777 * 11 10 9 37 37 H 1.09002 * 109.46895 * 59.99571 * 12 10 9 38 38 H 1.08993 * 109.47304 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.46886 * 300.00164 * 12 10 9 40 40 H 1.08997 * 109.47149 * 299.99787 * 13 10 9 41 41 H 1.08989 * 109.47019 * 60.00316 * 13 10 9 42 42 H 0.96999 * 120.00415 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2623 2.0699 1.0584 5 6 2.6840 3.2609 0.6985 6 6 2.6844 3.2609 -0.6983 7 6 3.0807 4.3964 -1.6063 8 7 4.4884 4.2423 -1.9973 9 6 4.9109 5.3344 -2.8843 10 6 6.3790 5.1402 -3.2686 11 6 7.2420 5.1463 -2.0053 12 6 6.5441 3.8024 -3.9924 13 6 6.8193 6.2780 -4.1920 14 6 8.2653 6.0862 -4.5710 15 1 8.8151 5.2375 -4.1916 16 6 8.8860 6.9938 -5.4030 17 7 10.1479 6.8268 -5.7333 18 14 7.9349 8.4613 -6.0597 19 1 8.0750 9.6027 -5.1201 20 1 8.4734 8.8455 -7.3892 21 1 6.5000 8.1022 -6.1918 22 7 2.2622 2.0700 -1.0582 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.9721 4.0733 1.3491 29 1 2.4529 4.3854 -2.4972 30 1 2.9509 5.3432 -1.0819 31 1 4.6477 3.3439 -2.4280 32 1 4.2958 5.3303 -3.7841 33 1 4.7938 6.2875 -2.3685 34 1 6.9285 4.3360 -1.3471 35 1 8.2880 5.0084 -2.2791 36 1 7.1246 6.0994 -1.4896 37 1 5.9292 3.7980 -4.8924 38 1 7.5899 3.6642 -4.2666 39 1 6.2305 2.9921 -3.3342 40 1 6.2046 6.2740 -5.0920 41 1 6.7019 7.2307 -3.6759 42 1 10.5848 7.4654 -6.3183 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839107248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:25 Heat of formation + Delta-G solvation = 70.926423 kcal Electronic energy + Delta-G solvation = -20055.307048 eV Core-core repulsion = 17071.690382 eV Total energy + Delta-G solvation = -2983.616666 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.47505 -39.23559 -36.51730 -35.30180 -34.23745 -33.24558 -31.38182 -29.65301 -27.91497 -27.85141 -25.92668 -24.87957 -23.56639 -22.83266 -21.61995 -19.48475 -18.83948 -18.32709 -17.43219 -16.70998 -16.35722 -15.93112 -15.83995 -15.43542 -15.05897 -14.91779 -14.67343 -14.22738 -14.02941 -13.66184 -13.51490 -13.26302 -12.98678 -12.80116 -12.74787 -12.51814 -12.30568 -12.21259 -12.19241 -12.01806 -11.76503 -11.68636 -11.33096 -11.25901 -10.98103 -10.80395 -10.67319 -10.14054 -9.26054 -8.19107 -6.19431 0.84226 1.38937 1.40331 1.44465 1.48695 1.51551 2.42362 3.14071 3.16180 3.48450 3.83412 3.95381 3.99567 4.14905 4.22161 4.25406 4.31726 4.37564 4.60498 4.66234 4.76217 4.78631 4.79174 4.84506 4.96777 5.06681 5.09493 5.12215 5.17606 5.21249 5.29908 5.39295 5.48750 5.55222 5.64779 5.78434 5.82659 5.84586 6.11427 6.42714 6.46773 6.88260 7.38954 7.42982 8.97322 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.043809 B = 0.003229 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.985944 B = 8669.382769 C = 8762.197567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.124 3.876 3 N -0.159 5.159 4 N -0.310 5.310 5 C -0.015 4.015 6 C -0.001 4.001 7 C 0.151 3.849 8 N -0.681 5.681 9 C 0.080 3.920 10 C -0.048 4.048 11 C -0.108 4.108 12 C -0.124 4.124 13 C -0.003 4.003 14 C -0.503 4.503 15 H 0.042 0.958 16 C -0.002 4.002 17 N -0.957 5.957 18 Si 0.943 3.057 19 H -0.270 1.270 20 H -0.291 1.291 21 H -0.246 1.246 22 N -0.305 5.305 23 H 0.113 0.887 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.219 0.781 29 H 0.045 0.955 30 H 0.111 0.889 31 H 0.339 0.661 32 H 0.031 0.969 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.025 0.975 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.035 0.965 39 H 0.059 0.941 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.848 -10.694 12.282 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.006 3.994 3 N -0.061 5.061 4 N -0.151 5.151 5 C -0.197 4.197 6 C -0.164 4.164 7 C 0.021 3.979 8 N -0.314 5.314 9 C -0.049 4.049 10 C -0.049 4.049 11 C -0.166 4.166 12 C -0.181 4.181 13 C -0.041 4.041 14 C -0.541 4.541 15 H 0.060 0.940 16 C -0.197 4.197 17 N -0.599 5.599 18 Si 0.767 3.233 19 H -0.195 1.195 20 H -0.217 1.217 21 H -0.170 1.170 22 N -0.149 5.149 23 H 0.131 0.869 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.136 0.864 27 H 0.141 0.859 28 H 0.235 0.765 29 H 0.064 0.936 30 H 0.129 0.871 31 H 0.158 0.842 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.033 0.967 41 H 0.035 0.965 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.971 -11.663 12.773 27.963 hybrid contribution 0.324 1.296 -1.416 1.947 sum -21.647 -10.367 11.356 26.553 Atomic orbital electron populations 1.22127 0.92256 1.05217 1.02344 1.22362 0.96743 0.73244 1.07080 1.48536 1.44669 1.14139 0.98752 1.74006 1.18234 1.06159 1.16739 1.25050 1.03708 0.96050 0.94925 1.23228 1.04250 0.94031 0.94855 1.20136 0.88326 0.93782 0.95687 1.60526 1.18662 1.05946 1.46257 1.21912 0.94115 0.94753 0.94111 1.20350 0.93985 0.95291 0.95243 1.21504 0.97983 1.00855 0.96222 1.21687 1.00870 0.96481 0.99101 1.19602 0.94509 0.95001 0.94994 1.21451 0.96246 1.09200 1.27229 0.93995 1.25957 0.95611 1.01262 0.96869 1.70070 1.12913 1.38595 1.38344 0.85766 0.80275 0.79705 0.77524 1.19488 1.21703 1.17002 1.73941 1.18169 1.05966 1.16796 0.86869 0.92462 0.92830 0.86374 0.85908 0.76474 0.93648 0.87092 0.84170 0.95128 0.90283 0.91939 0.95615 0.93769 0.93687 0.94627 0.92236 0.96737 0.96520 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 10.24 71.98 0.74 -0.80 16 2 C 0.12 1.53 7.26 86.37 0.63 2.15 16 3 N -0.16 -3.42 3.95 -187.50 -0.74 -4.16 16 4 N -0.31 -7.20 12.05 -56.87 -0.69 -7.89 16 5 C -0.02 -0.33 12.16 85.11 1.03 0.70 16 6 C 0.00 -0.03 6.87 42.97 0.30 0.27 16 7 C 0.15 3.23 6.27 85.56 0.54 3.77 16 8 N -0.68 -17.52 5.70 -517.93 -2.95 -20.47 16 9 C 0.08 2.34 4.65 86.30 0.40 2.74 16 10 C -0.05 -1.80 0.60 -52.18 -0.03 -1.83 16 11 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 12 C -0.12 -4.58 7.89 71.98 0.57 -4.01 16 13 C 0.00 -0.15 3.11 29.85 0.09 -0.05 16 14 C -0.50 -28.36 8.20 25.60 0.21 -28.15 16 15 H 0.04 2.61 5.92 -2.91 -0.02 2.59 16 16 C 0.00 -0.10 5.47 84.66 0.46 0.37 16 17 N -0.96 -60.65 13.96 21.45 0.30 -60.35 16 18 Si 0.94 44.60 27.47 68.60 1.88 46.49 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 22 N -0.31 -7.53 12.05 -47.25 -0.57 -8.10 16 23 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.22 3.37 8.06 -2.91 -0.02 3.34 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.34 9.20 6.77 -89.69 -0.61 8.59 16 32 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.06 2.12 7.60 -2.39 -0.02 2.10 16 35 H 0.02 1.12 6.62 -2.39 -0.02 1.10 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.03 1.53 6.62 -2.39 -0.02 1.52 16 39 H 0.06 1.88 6.57 -2.39 -0.02 1.86 16 40 H 0.01 0.65 7.20 -2.39 -0.02 0.64 16 41 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 42 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -70.38 337.50 3.08 -67.30 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.33 Total: 15.54 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 5.51 Total: -28.36 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -4.65 Total: -100.97 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.49 kcal Total: -70.38 3.08 -67.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839107248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.227 kcal (2) G-P(sol) polarization free energy of solvation -70.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds