Wall clock time and date at job start Mon Mar 30 2020 00:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47232 * 2 1 4 4 N 1.28597 * 124.61755 * 90.02724 * 3 2 1 5 5 C 1.31384 * 108.71793 * 179.97438 * 4 3 2 6 6 C 1.50698 * 127.04846 * 180.02562 * 5 4 3 7 7 C 1.39673 * 105.89841 * 359.97438 * 5 4 3 8 8 C 1.50696 * 127.04881 * 180.02562 * 7 5 4 9 9 N 1.46907 * 109.47019 * 90.00097 * 8 7 5 10 10 C 1.46900 * 110.99706 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46929 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46874 * 299.99726 * 11 10 9 13 13 C 1.53001 * 109.47025 * 59.99614 * 11 10 9 14 14 C 1.50698 * 109.47129 * 179.97438 * 11 10 9 15 15 H 1.08001 * 120.00331 * 359.97438 * 14 11 10 16 16 C 1.37883 * 119.99952 * 179.97438 * 14 11 10 17 17 N 1.31512 * 119.99740 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99900 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47197 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46928 * 119.99903 * 18 16 14 21 21 H 1.48501 * 109.47140 * 239.99892 * 18 16 14 22 22 N 1.28596 * 124.61789 * 269.98345 * 3 2 1 23 23 H 1.08997 * 109.47103 * 59.99883 * 1 2 3 24 24 H 1.08993 * 109.47331 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46874 * 300.00440 * 1 2 3 26 26 H 1.08995 * 109.47724 * 239.99764 * 2 1 3 27 27 H 1.09004 * 109.47026 * 119.99731 * 2 1 3 28 28 H 1.09005 * 109.47103 * 89.97683 * 6 5 4 29 29 H 1.08998 * 109.46868 * 209.97047 * 6 5 4 30 30 H 1.08997 * 109.47630 * 329.97438 * 6 5 4 31 31 H 1.09001 * 109.47122 * 209.99917 * 8 7 5 32 32 H 1.09001 * 109.47475 * 329.99816 * 8 7 5 33 33 H 1.00893 * 111.00381 * 56.04739 * 9 8 7 34 34 H 1.09003 * 109.47321 * 299.99613 * 10 9 8 35 35 H 1.08997 * 109.47703 * 59.99551 * 10 9 8 36 36 H 1.09001 * 109.47266 * 60.00039 * 12 11 10 37 37 H 1.09002 * 109.46965 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.47183 * 300.00040 * 12 11 10 39 39 H 1.08990 * 109.47244 * 60.00662 * 13 11 10 40 40 H 1.09001 * 109.46423 * 180.02562 * 13 11 10 41 41 H 1.08992 * 109.47043 * 299.99938 * 13 11 10 42 42 H 0.96999 * 119.99570 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2624 2.0698 1.0583 5 6 2.6839 3.2610 0.6984 6 6 3.0860 4.3945 1.6064 7 6 2.6842 3.2609 -0.6984 8 6 3.0861 4.3945 -1.6063 9 7 4.5222 4.3002 -1.9011 10 6 4.9508 5.3921 -2.7853 11 6 6.4484 5.2601 -3.0696 12 6 7.2257 5.3344 -1.7538 13 6 6.7222 3.9165 -3.7485 14 6 6.8881 6.3798 -3.9772 15 1 6.1711 7.1122 -4.3177 16 6 8.2059 6.4694 -4.3730 17 7 9.0791 5.5779 -3.9580 18 14 8.7507 7.8570 -5.4987 19 1 7.5859 8.7205 -5.8195 20 1 9.7934 8.6661 -4.8180 21 1 9.3060 7.2880 -6.7529 22 7 2.2622 2.0699 -1.0583 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.1516 4.3245 1.8250 29 1 2.8776 5.3450 1.1151 30 1 2.5197 4.3341 2.5358 31 1 2.5197 4.3339 -2.5357 32 1 2.8776 5.3449 -1.1151 33 1 4.7516 3.4016 -2.2983 34 1 4.3974 5.3389 -3.7229 35 1 4.7554 6.3493 -2.3020 36 1 6.9076 4.5242 -1.0976 37 1 8.2927 5.2408 -1.9563 38 1 7.0307 6.2916 -1.2701 39 1 6.1686 3.8636 -4.6858 40 1 7.7892 3.8224 -3.9505 41 1 6.4041 3.1065 -3.0923 42 1 10.0062 5.6412 -4.2362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839163522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:40 Heat of formation + Delta-G solvation = 95.314411 kcal Electronic energy + Delta-G solvation = -20459.749217 eV Core-core repulsion = 17477.190094 eV Total energy + Delta-G solvation = -2982.559123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.42032 -37.02689 -35.38971 -33.90242 -32.65290 -31.60841 -30.39956 -27.92663 -26.39162 -25.51701 -25.15841 -23.57268 -22.77022 -21.04834 -20.61625 -18.42802 -17.28852 -16.42728 -15.92125 -15.26438 -14.76064 -14.52716 -14.08176 -13.97862 -13.68376 -13.33301 -12.95958 -12.71625 -12.44512 -12.41636 -12.30603 -12.12306 -11.76253 -11.56420 -11.17728 -10.98342 -10.91459 -10.64726 -10.58567 -10.52074 -10.13585 -10.05918 -9.95085 -9.34366 -9.10900 -8.82888 -8.57164 -8.26165 -7.67836 -5.88153 -3.98436 1.91336 2.32562 2.53314 3.32570 3.40930 3.44425 4.08090 4.46860 4.57355 4.62912 4.83500 4.90117 5.04683 5.15890 5.30098 5.36116 5.37414 5.48161 5.67823 5.72576 5.85264 5.95915 6.02329 6.29536 6.38119 6.43909 6.46644 6.75972 6.82862 6.93398 7.12035 7.21377 7.42830 7.50849 7.74940 7.79716 7.86444 7.98258 8.24721 8.38489 8.48806 8.59258 9.03400 9.66494 11.12394 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.037261 B = 0.003709 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.277548 B = 7548.333010 C = 7769.235778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.163 5.163 4 N -0.298 5.298 5 C 0.019 3.981 6 C -0.060 4.060 7 C 0.017 3.983 8 C 0.146 3.854 9 N -0.679 5.679 10 C 0.076 3.924 11 C 0.069 3.931 12 C -0.118 4.118 13 C -0.132 4.132 14 C -0.505 4.505 15 H 0.053 0.947 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.888 3.112 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.286 1.286 22 N -0.288 5.288 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.340 0.660 34 H 0.015 0.985 35 H 0.059 0.941 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.083 0.917 41 H 0.010 0.990 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.557 -8.374 8.700 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.020 3.980 3 N -0.063 5.063 4 N -0.141 5.141 5 C -0.144 4.144 6 C -0.119 4.119 7 C -0.147 4.147 8 C 0.015 3.985 9 N -0.312 5.312 10 C -0.053 4.053 11 C 0.068 3.932 12 C -0.176 4.176 13 C -0.190 4.190 14 C -0.544 4.544 15 H 0.071 0.929 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.212 1.212 22 N -0.130 5.130 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.159 0.841 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.092 0.908 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.101 0.899 41 H 0.029 0.971 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.654 -9.430 9.249 19.729 hybrid contribution 0.224 1.154 -1.549 1.945 sum -14.431 -8.275 7.700 18.330 Atomic orbital electron populations 1.22170 0.93503 1.03558 1.03535 1.21865 0.95687 0.74945 1.05506 1.47861 1.45952 1.13085 0.99396 1.73926 1.18874 1.05332 1.15923 1.23034 1.03341 0.94116 0.93925 1.20030 1.02163 0.92954 0.96716 1.23055 1.03641 0.94002 0.93953 1.20093 0.90569 0.92739 0.95117 1.60632 1.12047 1.07624 1.50945 1.22183 0.98941 0.92272 0.91862 1.18094 0.87817 0.93743 0.93511 1.21633 1.02928 0.97058 0.96008 1.21829 1.03922 0.96274 0.96965 1.21156 0.94012 1.10638 1.28603 0.92878 1.24891 0.96731 0.95873 0.96133 1.69851 1.02871 1.34700 1.44926 0.86606 0.78600 0.82502 0.80652 1.19928 1.21143 1.21227 1.73967 1.17854 1.05309 1.15862 0.91503 0.89843 0.91580 0.87624 0.87702 0.90004 0.90190 0.91366 0.94326 0.89386 0.84075 0.96694 0.92245 0.96138 0.90814 0.96223 0.96206 0.89875 0.97148 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 37.16 0.38 -0.83 16 2 C 0.14 1.24 7.26 -4.04 -0.03 1.21 16 3 N -0.16 -2.26 3.95 -10.62 -0.04 -2.30 16 4 N -0.30 -4.45 12.05 33.71 0.41 -4.05 16 5 C 0.02 0.28 7.35 -82.25 -0.60 -0.32 16 6 C -0.06 -0.71 10.34 36.00 0.37 -0.33 16 7 C 0.02 0.27 6.86 -82.25 -0.56 -0.30 16 8 C 0.15 2.29 6.14 -4.97 -0.03 2.26 16 9 N -0.68 -12.50 5.70 -115.05 -0.66 -13.16 16 10 C 0.08 1.57 4.59 -3.82 -0.02 1.55 16 11 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 12 C -0.12 -2.90 8.09 37.16 0.30 -2.60 16 13 C -0.13 -3.18 7.92 37.16 0.29 -2.89 16 14 C -0.51 -13.61 8.01 -34.44 -0.28 -13.88 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 17 N -0.88 -24.64 9.35 55.43 0.52 -24.12 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 N -0.29 -4.56 12.05 33.71 0.41 -4.15 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.85 7.50 -51.93 -0.39 0.46 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.24 7.50 -51.93 -0.39 0.85 16 33 H 0.34 6.56 6.76 -39.30 -0.27 6.30 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 37 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 41 H 0.01 0.22 6.57 -51.93 -0.34 -0.13 16 42 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -30.30 338.32 -6.67 -36.97 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.03 Total: 2.48 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -0.36 Total: -12.89 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.63 Total: -47.78 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.30 -6.67 -36.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839163522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.280 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds