Wall clock time and date at job start Mon Mar 30 2020 00:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47232 * 2 1 4 4 N 1.28597 * 124.61755 * 90.02724 * 3 2 1 5 5 C 1.31384 * 108.71793 * 179.97438 * 4 3 2 6 6 C 1.50698 * 127.04846 * 180.02562 * 5 4 3 7 7 C 1.39673 * 105.89841 * 359.97438 * 5 4 3 8 8 C 1.50696 * 127.04881 * 180.02562 * 7 5 4 9 9 N 1.46907 * 109.47019 * 90.00097 * 8 7 5 10 10 C 1.46900 * 110.99706 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46929 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46874 * 299.99726 * 11 10 9 13 13 C 1.53001 * 109.47025 * 59.99614 * 11 10 9 14 14 C 1.50698 * 109.47129 * 179.97438 * 11 10 9 15 15 H 1.08001 * 120.00331 * 359.97438 * 14 11 10 16 16 C 1.37883 * 119.99952 * 179.97438 * 14 11 10 17 17 N 1.31512 * 119.99740 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99900 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47197 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46928 * 119.99903 * 18 16 14 21 21 H 1.48501 * 109.47140 * 239.99892 * 18 16 14 22 22 N 1.28596 * 124.61789 * 269.98345 * 3 2 1 23 23 H 1.08997 * 109.47103 * 59.99883 * 1 2 3 24 24 H 1.08993 * 109.47331 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46874 * 300.00440 * 1 2 3 26 26 H 1.08995 * 109.47724 * 239.99764 * 2 1 3 27 27 H 1.09004 * 109.47026 * 119.99731 * 2 1 3 28 28 H 1.09005 * 109.47103 * 89.97683 * 6 5 4 29 29 H 1.08998 * 109.46868 * 209.97047 * 6 5 4 30 30 H 1.08997 * 109.47630 * 329.97438 * 6 5 4 31 31 H 1.09001 * 109.47122 * 209.99917 * 8 7 5 32 32 H 1.09001 * 109.47475 * 329.99816 * 8 7 5 33 33 H 1.00893 * 111.00381 * 56.04739 * 9 8 7 34 34 H 1.09003 * 109.47321 * 299.99613 * 10 9 8 35 35 H 1.08997 * 109.47703 * 59.99551 * 10 9 8 36 36 H 1.09001 * 109.47266 * 60.00039 * 12 11 10 37 37 H 1.09002 * 109.46965 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.47183 * 300.00040 * 12 11 10 39 39 H 1.08990 * 109.47244 * 60.00662 * 13 11 10 40 40 H 1.09001 * 109.46423 * 180.02562 * 13 11 10 41 41 H 1.08992 * 109.47043 * 299.99938 * 13 11 10 42 42 H 0.96999 * 119.99570 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2624 2.0698 1.0583 5 6 2.6839 3.2610 0.6984 6 6 3.0860 4.3945 1.6064 7 6 2.6842 3.2609 -0.6984 8 6 3.0861 4.3945 -1.6063 9 7 4.5222 4.3002 -1.9011 10 6 4.9508 5.3921 -2.7853 11 6 6.4484 5.2601 -3.0696 12 6 7.2257 5.3344 -1.7538 13 6 6.7222 3.9165 -3.7485 14 6 6.8881 6.3798 -3.9772 15 1 6.1711 7.1122 -4.3177 16 6 8.2059 6.4694 -4.3730 17 7 9.0791 5.5779 -3.9580 18 14 8.7507 7.8570 -5.4987 19 1 7.5859 8.7205 -5.8195 20 1 9.7934 8.6661 -4.8180 21 1 9.3060 7.2880 -6.7529 22 7 2.2622 2.0699 -1.0583 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.1516 4.3245 1.8250 29 1 2.8776 5.3450 1.1151 30 1 2.5197 4.3341 2.5358 31 1 2.5197 4.3339 -2.5357 32 1 2.8776 5.3449 -1.1151 33 1 4.7516 3.4016 -2.2983 34 1 4.3974 5.3389 -3.7229 35 1 4.7554 6.3493 -2.3020 36 1 6.9076 4.5242 -1.0976 37 1 8.2927 5.2408 -1.9563 38 1 7.0307 6.2916 -1.2701 39 1 6.1686 3.8636 -4.6858 40 1 7.7892 3.8224 -3.9505 41 1 6.4041 3.1065 -3.0923 42 1 10.0062 5.6412 -4.2362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839163522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:39 Heat of formation + Delta-G solvation = 76.097869 kcal Electronic energy + Delta-G solvation = -20460.582509 eV Core-core repulsion = 17477.190094 eV Total energy + Delta-G solvation = -2983.392415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.50718 -38.70444 -36.53603 -35.31229 -33.78812 -33.08039 -31.81664 -28.92280 -27.66710 -27.48798 -27.19425 -24.94926 -23.84731 -22.14681 -21.71967 -20.31544 -18.31283 -17.82801 -17.49328 -16.92732 -16.24612 -15.62372 -15.50799 -15.29093 -14.77165 -14.37859 -14.24509 -14.10396 -14.05241 -13.66694 -13.32334 -13.17342 -13.02950 -13.01048 -12.77959 -12.49521 -12.45904 -12.29679 -12.14957 -12.04234 -11.93506 -11.76985 -11.27676 -11.15172 -10.91778 -10.56377 -10.32139 -9.91788 -9.16669 -7.93729 -6.10478 0.81179 1.37377 1.43725 1.45937 1.47209 1.56589 2.49376 3.08133 3.28730 3.60502 3.77215 3.94157 3.96631 4.13047 4.23196 4.39994 4.56594 4.62167 4.70298 4.70809 4.73776 4.88070 4.90249 4.91886 5.04264 5.07529 5.10423 5.19694 5.25723 5.31948 5.44191 5.47479 5.57459 5.73336 5.79753 5.84102 6.17431 6.24647 6.35386 6.48865 6.59997 6.99559 7.37998 7.57231 9.04746 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.037261 B = 0.003709 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.277548 B = 7548.333010 C = 7769.235778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.124 3.876 3 N -0.158 5.158 4 N -0.309 5.309 5 C 0.008 3.992 6 C -0.058 4.058 7 C -0.003 4.003 8 C 0.152 3.848 9 N -0.679 5.679 10 C 0.090 3.910 11 C 0.060 3.940 12 C -0.104 4.104 13 C -0.120 4.120 14 C -0.523 4.523 15 H 0.049 0.951 16 C 0.020 3.980 17 N -0.905 5.905 18 Si 0.945 3.055 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.285 1.285 22 N -0.304 5.304 23 H 0.052 0.948 24 H 0.115 0.885 25 H 0.056 0.944 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.105 0.895 33 H 0.334 0.666 34 H 0.012 0.988 35 H 0.062 0.938 36 H 0.030 0.970 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.055 0.945 41 H 0.026 0.974 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.730 -8.594 9.193 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.006 3.994 3 N -0.060 5.060 4 N -0.152 5.152 5 C -0.154 4.154 6 C -0.117 4.117 7 C -0.165 4.165 8 C 0.021 3.979 9 N -0.311 5.311 10 C -0.039 4.039 11 C 0.059 3.941 12 C -0.162 4.162 13 C -0.178 4.178 14 C -0.562 4.562 15 H 0.067 0.933 16 C -0.178 4.178 17 N -0.545 5.545 18 Si 0.772 3.228 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.212 1.212 22 N -0.148 5.148 23 H 0.071 0.929 24 H 0.134 0.866 25 H 0.075 0.925 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.123 0.877 33 H 0.153 0.847 34 H 0.030 0.970 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.842 -9.647 9.750 20.955 hybrid contribution 0.542 1.116 -1.670 2.081 sum -15.301 -8.530 8.079 19.291 Atomic orbital electron populations 1.22124 0.92080 1.05281 1.02330 1.22383 0.96878 0.73030 1.07077 1.48423 1.44780 1.14080 0.98693 1.73916 1.19273 1.05603 1.16405 1.23480 1.03124 0.94792 0.94019 1.20121 1.02068 0.92454 0.97070 1.23062 1.04793 0.94184 0.94447 1.20083 0.88618 0.93773 0.95414 1.60565 1.14200 1.06480 1.49849 1.21869 0.96483 0.93243 0.92267 1.18146 0.90128 0.92939 0.92873 1.21452 1.01153 0.97231 0.96357 1.21663 1.01934 0.97026 0.97211 1.21481 0.94188 1.11352 1.29158 0.93287 1.25556 0.96952 0.97872 0.97449 1.69988 1.02932 1.35870 1.45669 0.85706 0.78147 0.80048 0.78876 1.19395 1.20993 1.21150 1.73914 1.18251 1.05702 1.16893 0.92891 0.86643 0.92460 0.86401 0.85835 0.90357 0.89095 0.89795 0.94219 0.87707 0.84748 0.97014 0.91937 0.95093 0.93543 0.96457 0.96471 0.92640 0.95501 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 10.24 71.98 0.74 -1.25 16 2 C 0.12 1.97 7.26 86.38 0.63 2.60 16 3 N -0.16 -4.18 3.95 -187.50 -0.74 -4.92 16 4 N -0.31 -8.81 12.05 -47.25 -0.57 -9.38 16 5 C 0.01 0.24 7.35 42.97 0.32 0.55 16 6 C -0.06 -1.28 10.34 71.24 0.74 -0.55 16 7 C 0.00 -0.08 6.86 42.97 0.30 0.22 16 8 C 0.15 4.53 6.14 85.55 0.52 5.06 16 9 N -0.68 -24.13 5.70 -517.91 -2.95 -27.08 16 10 C 0.09 3.65 4.59 86.30 0.40 4.04 16 11 C 0.06 2.88 0.57 -52.93 -0.03 2.85 16 12 C -0.10 -5.07 8.09 71.98 0.58 -4.49 16 13 C -0.12 -5.80 7.92 71.98 0.57 -5.23 16 14 C -0.52 -28.05 8.01 25.60 0.21 -27.84 16 15 H 0.05 2.61 7.74 -2.91 -0.02 2.58 16 16 C 0.02 1.11 5.15 84.66 0.44 1.55 16 17 N -0.91 -50.85 9.35 21.45 0.20 -50.65 16 18 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 22 N -0.30 -9.32 12.05 -47.25 -0.57 -9.89 16 23 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.09 1.76 7.50 -2.39 -0.02 1.74 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 2.75 7.50 -2.39 -0.02 2.73 16 33 H 0.33 12.55 6.76 -89.70 -0.61 11.94 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 36 H 0.03 1.39 7.60 -2.39 -0.02 1.37 16 37 H 0.05 2.51 6.07 -2.39 -0.01 2.49 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 2.98 6.07 -2.39 -0.01 2.97 16 41 H 0.03 1.16 6.57 -2.39 -0.02 1.14 16 42 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -63.74 338.32 3.18 -60.57 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.39 Total: 18.51 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 5.40 Total: -22.49 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -4.63 Total: -101.90 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -63.74 3.18 -60.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839163522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.663 kcal (2) G-P(sol) polarization free energy of solvation -63.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds