Wall clock time and date at job start Mon Mar 30 2020 00:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99717 * 2 1 4 4 H 1.48504 * 109.46740 * 240.00146 * 3 2 1 5 5 H 1.48499 * 109.47449 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47051 * 120.00481 * 3 2 1 7 7 C 1.37874 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99781 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00336 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47074 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99783 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46902 * 194.51587 * 11 10 9 13 13 H 1.08994 * 113.03086 * 53.94261 * 12 11 10 14 14 C 1.53936 * 113.75473 * 185.66079 * 12 11 10 15 15 C 1.53945 * 86.45375 * 138.09121 * 14 12 11 16 16 N 1.47958 * 86.17761 * 336.22544 * 15 14 12 17 17 C 1.46900 * 111.00055 * 137.58366 * 16 15 14 18 18 C 1.54246 * 108.89494 * 301.17373 * 17 16 15 19 19 C 1.50551 * 108.48208 * 159.17944 * 18 17 16 20 20 C 1.54058 * 112.41885 * 94.26713 * 19 18 17 21 21 C 1.54073 * 112.81751 * 318.27606 * 20 19 18 22 22 C 1.50481 * 112.49068 * 318.28711 * 21 20 19 23 23 C 1.45544 * 108.90060 * 178.37910 * 17 16 15 24 24 H 0.96997 * 120.00377 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.47310 * 59.99698 * 9 7 2 26 26 H 1.08996 * 109.47182 * 299.99745 * 9 7 2 27 27 H 1.00897 * 111.00139 * 303.95203 * 10 9 7 28 28 H 1.08999 * 109.46972 * 74.51265 * 11 10 9 29 29 H 1.09002 * 109.46927 * 314.51724 * 11 10 9 30 30 H 1.09000 * 113.73781 * 23.68397 * 14 12 11 31 31 H 1.09000 * 113.73601 * 252.49672 * 14 12 11 32 32 H 1.09001 * 113.75719 * 90.53881 * 15 14 12 33 33 H 1.08993 * 113.75975 * 221.91033 * 15 14 12 34 34 H 1.09002 * 108.87479 * 59.77413 * 17 16 15 35 35 H 1.08997 * 109.62532 * 278.97328 * 18 17 16 36 36 H 1.08993 * 109.62785 * 39.54849 * 18 17 16 37 37 H 1.08999 * 108.92463 * 333.50197 * 19 18 17 38 38 H 1.09005 * 108.83327 * 214.96176 * 19 18 17 39 39 H 1.09002 * 108.81676 * 197.41746 * 20 19 18 40 40 H 1.08997 * 108.73087 * 79.07481 * 20 19 18 41 41 H 1.08995 * 108.87863 * 197.50929 * 21 20 19 42 42 H 1.08993 * 108.79729 * 79.00551 * 21 20 19 43 43 H 1.08994 * 109.62844 * 334.44041 * 22 21 20 44 44 H 1.09000 * 109.62202 * 213.86092 * 22 21 20 45 45 H 1.08995 * 108.89300 * 303.44743 * 23 17 16 46 46 H 1.09004 * 108.89367 * 62.02813 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5053 -4.9071 0.0011 12 6 2.4899 -6.0210 0.3627 13 1 3.0188 -5.8358 1.2976 14 6 1.8916 -7.4355 0.2582 15 6 3.2271 -7.8491 -0.3863 16 7 3.3765 -6.4242 -0.7556 17 6 4.7528 -5.9631 -0.5290 18 6 5.1072 -6.1609 0.9591 19 6 6.6065 -6.1866 1.0933 20 6 7.1895 -4.8023 1.4357 21 6 6.5250 -3.6612 0.6420 22 6 6.2921 -4.0226 -0.8001 23 6 4.8578 -4.5715 -0.9421 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8405 -3.5487 -0.7808 28 1 1.0906 -5.0959 -0.9890 29 1 0.6990 -4.8827 0.7342 30 1 1.0391 -7.5024 -0.4177 31 1 1.7063 -7.9059 1.2238 32 1 3.9712 -8.1974 0.3301 33 1 3.1143 -8.5149 -1.2418 34 1 5.4303 -6.5636 -1.1360 35 1 4.6996 -5.3373 1.5451 36 1 4.6926 -7.1052 1.3118 37 1 7.0397 -6.5292 0.1536 38 1 6.8772 -6.8883 1.8823 39 1 8.2574 -4.8068 1.2174 40 1 7.0498 -4.6174 2.5007 41 1 7.1664 -2.7810 0.6858 42 1 5.5675 -3.4226 1.1048 43 1 7.0080 -4.7852 -1.1067 44 1 6.4082 -3.1357 -1.4231 45 1 4.5496 -4.4885 -1.9843 46 1 4.1884 -3.9694 -0.3276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872236631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:52 Heat of formation + Delta-G solvation = 31.683994 kcal Electronic energy + Delta-G solvation = -21930.201231 eV Core-core repulsion = 19048.423229 eV Total energy + Delta-G solvation = -2881.778002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83717 -37.50016 -35.01690 -32.43785 -32.39656 -31.73999 -28.45829 -27.22826 -25.53177 -24.73296 -23.34308 -22.44946 -21.57334 -20.39159 -19.39016 -18.20516 -16.67039 -16.43535 -15.36016 -15.10488 -14.81485 -14.49620 -14.28606 -14.04071 -13.93972 -13.26596 -12.99323 -12.80316 -12.48208 -12.20001 -12.05021 -11.90443 -11.56232 -11.37706 -11.18624 -10.96989 -10.75218 -10.63300 -10.58087 -10.50676 -10.37907 -10.19291 -10.11523 -10.04244 -9.86275 -9.65106 -9.12546 -8.45552 -8.39868 -7.22515 -5.99537 -4.01199 3.35249 3.39021 3.41996 4.05951 4.45241 4.66554 4.71898 4.86761 4.89324 5.02665 5.22367 5.28494 5.30739 5.36303 5.41436 5.48835 5.52333 5.64576 5.65869 5.69178 5.77497 5.79628 5.88665 5.92761 6.00808 6.14328 6.16309 6.24261 6.27403 6.29600 6.38915 6.39485 6.43318 6.51496 6.62188 6.65501 6.70278 6.99899 7.30417 7.38763 7.50343 7.82296 8.18238 8.45948 8.67461 9.08002 9.63441 11.11583 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.006121 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.365988 B = 4573.144577 C = 5815.455421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.061 0.939 9 C 0.193 3.807 10 N -0.694 5.694 11 C 0.075 3.925 12 C 0.034 3.966 13 H 0.094 0.906 14 C -0.145 4.145 15 C -0.006 4.006 16 N -0.476 5.476 17 C 0.067 3.933 18 C -0.152 4.152 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.123 4.123 22 C -0.108 4.108 23 C -0.142 4.142 24 H 0.261 0.739 25 H -0.015 1.015 26 H 0.026 0.974 27 H 0.336 0.664 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.840 -14.893 1.080 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.079 0.921 9 C 0.066 3.934 10 N -0.328 5.328 11 C -0.055 4.055 12 C -0.076 4.076 13 H 0.112 0.888 14 C -0.183 4.183 15 C -0.135 4.135 16 N -0.198 5.198 17 C -0.041 4.041 18 C -0.190 4.190 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.161 4.161 22 C -0.146 4.146 23 C -0.179 4.179 24 H 0.071 0.929 25 H 0.003 0.997 26 H 0.044 0.956 27 H 0.157 0.843 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.622 -14.516 1.067 18.019 hybrid contribution 0.405 0.671 -0.127 0.794 sum 11.027 -13.845 0.940 17.725 Atomic orbital electron populations 1.69954 1.06054 1.26793 1.50980 1.24976 0.94844 0.99261 0.95442 0.86585 0.79465 0.82867 0.78626 1.20282 1.21375 1.20190 1.21139 0.93380 0.90297 1.50214 0.92123 1.19552 0.90702 0.87514 0.95624 1.60915 1.21153 1.01337 1.49405 1.21702 0.94809 0.89884 0.99138 1.23808 0.94726 0.94269 0.94756 0.88804 1.23385 0.97671 0.96467 1.00797 1.23883 0.97057 0.92890 0.99645 1.68904 1.07118 1.03978 1.39768 1.20913 0.91215 0.97762 0.94236 1.22113 0.96315 1.02159 0.98402 1.21245 0.95723 0.96933 1.01023 1.21891 0.99066 0.94423 0.99772 1.21383 1.01731 0.97173 0.95801 1.21201 0.96616 1.00362 0.96445 1.20929 0.97777 0.96215 1.03027 0.92924 0.99748 0.95576 0.84293 0.95559 0.91454 0.89498 0.91513 0.91106 0.90096 0.91607 0.90103 0.91887 0.92470 0.92936 0.92910 0.92585 0.92723 0.90859 0.92653 0.91952 0.92071 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.55 9.32 -34.44 -0.32 -14.87 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.19 5.11 5.38 -4.98 -0.03 5.08 16 10 N -0.69 -14.89 5.26 -115.05 -0.61 -15.49 16 11 C 0.08 1.37 5.80 -3.82 -0.02 1.35 16 12 C 0.03 0.49 2.96 -66.46 -0.20 0.30 16 13 H 0.09 1.42 5.26 -51.93 -0.27 1.14 16 14 C -0.14 -1.73 7.84 -25.79 -0.20 -1.94 16 15 C -0.01 -0.07 7.68 -2.76 -0.02 -0.09 16 16 N -0.48 -6.67 5.94 -225.91 -1.34 -8.02 16 17 C 0.07 0.89 1.82 -70.58 -0.13 0.76 16 18 C -0.15 -1.82 3.33 -27.30 -0.09 -1.92 16 19 C -0.11 -1.19 5.32 -27.40 -0.15 -1.34 16 20 C -0.11 -1.27 5.85 -25.62 -0.15 -1.42 16 21 C -0.12 -1.62 5.32 -27.43 -0.15 -1.76 16 22 C -0.11 -1.42 5.61 -27.35 -0.15 -1.57 16 23 C -0.14 -2.09 3.77 -29.60 -0.11 -2.21 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 25 H -0.02 -0.44 8.14 -51.92 -0.42 -0.86 16 26 H 0.03 0.74 8.09 -51.93 -0.42 0.32 16 27 H 0.34 7.09 5.65 -39.29 -0.22 6.87 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.24 7.98 -51.93 -0.41 0.83 16 30 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.73 5.80 -51.93 -0.30 0.43 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.85 7.46 -51.93 -0.39 0.46 16 35 H 0.08 1.14 5.86 -51.93 -0.30 0.83 16 36 H 0.06 0.71 5.40 -51.93 -0.28 0.43 16 37 H 0.06 0.60 6.63 -51.93 -0.34 0.25 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.12 6.62 -51.93 -0.34 0.78 16 43 H 0.05 0.66 6.98 -51.93 -0.36 0.29 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.11 1.92 3.59 -51.93 -0.19 1.74 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -29.11 331.76 -11.08 -40.19 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -8.03 Total: 5.93 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -1.81 Total: -18.11 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -1.21 Total: -49.86 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.11 -11.08 -40.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872236631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.873 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds