Wall clock time and date at job start Mon Mar 30 2020 00:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99717 * 2 1 4 4 H 1.48504 * 109.46740 * 240.00146 * 3 2 1 5 5 H 1.48499 * 109.47449 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47051 * 120.00481 * 3 2 1 7 7 C 1.37874 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99781 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00336 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47074 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99783 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46902 * 194.51587 * 11 10 9 13 13 H 1.08994 * 113.03086 * 53.94261 * 12 11 10 14 14 C 1.53936 * 113.75473 * 185.66079 * 12 11 10 15 15 C 1.53945 * 86.45375 * 138.09121 * 14 12 11 16 16 N 1.47958 * 86.17761 * 336.22544 * 15 14 12 17 17 C 1.46900 * 111.00055 * 137.58366 * 16 15 14 18 18 C 1.54246 * 108.89494 * 301.17373 * 17 16 15 19 19 C 1.50551 * 108.48208 * 159.17944 * 18 17 16 20 20 C 1.54058 * 112.41885 * 94.26713 * 19 18 17 21 21 C 1.54073 * 112.81751 * 318.27606 * 20 19 18 22 22 C 1.50481 * 112.49068 * 318.28711 * 21 20 19 23 23 C 1.45544 * 108.90060 * 178.37910 * 17 16 15 24 24 H 0.96997 * 120.00377 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.47310 * 59.99698 * 9 7 2 26 26 H 1.08996 * 109.47182 * 299.99745 * 9 7 2 27 27 H 1.00897 * 111.00139 * 303.95203 * 10 9 7 28 28 H 1.08999 * 109.46972 * 74.51265 * 11 10 9 29 29 H 1.09002 * 109.46927 * 314.51724 * 11 10 9 30 30 H 1.09000 * 113.73781 * 23.68397 * 14 12 11 31 31 H 1.09000 * 113.73601 * 252.49672 * 14 12 11 32 32 H 1.09001 * 113.75719 * 90.53881 * 15 14 12 33 33 H 1.08993 * 113.75975 * 221.91033 * 15 14 12 34 34 H 1.09002 * 108.87479 * 59.77413 * 17 16 15 35 35 H 1.08997 * 109.62532 * 278.97328 * 18 17 16 36 36 H 1.08993 * 109.62785 * 39.54849 * 18 17 16 37 37 H 1.08999 * 108.92463 * 333.50197 * 19 18 17 38 38 H 1.09005 * 108.83327 * 214.96176 * 19 18 17 39 39 H 1.09002 * 108.81676 * 197.41746 * 20 19 18 40 40 H 1.08997 * 108.73087 * 79.07481 * 20 19 18 41 41 H 1.08995 * 108.87863 * 197.50929 * 21 20 19 42 42 H 1.08993 * 108.79729 * 79.00551 * 21 20 19 43 43 H 1.08994 * 109.62844 * 334.44041 * 22 21 20 44 44 H 1.09000 * 109.62202 * 213.86092 * 22 21 20 45 45 H 1.08995 * 108.89300 * 303.44743 * 23 17 16 46 46 H 1.09004 * 108.89367 * 62.02813 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5053 -4.9071 0.0011 12 6 2.4899 -6.0210 0.3627 13 1 3.0188 -5.8358 1.2976 14 6 1.8916 -7.4355 0.2582 15 6 3.2271 -7.8491 -0.3863 16 7 3.3765 -6.4242 -0.7556 17 6 4.7528 -5.9631 -0.5290 18 6 5.1072 -6.1609 0.9591 19 6 6.6065 -6.1866 1.0933 20 6 7.1895 -4.8023 1.4357 21 6 6.5250 -3.6612 0.6420 22 6 6.2921 -4.0226 -0.8001 23 6 4.8578 -4.5715 -0.9421 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8405 -3.5487 -0.7808 28 1 1.0906 -5.0959 -0.9890 29 1 0.6990 -4.8827 0.7342 30 1 1.0391 -7.5024 -0.4177 31 1 1.7063 -7.9059 1.2238 32 1 3.9712 -8.1974 0.3301 33 1 3.1143 -8.5149 -1.2418 34 1 5.4303 -6.5636 -1.1360 35 1 4.6996 -5.3373 1.5451 36 1 4.6926 -7.1052 1.3118 37 1 7.0397 -6.5292 0.1536 38 1 6.8772 -6.8883 1.8823 39 1 8.2574 -4.8068 1.2174 40 1 7.0498 -4.6174 2.5007 41 1 7.1664 -2.7810 0.6858 42 1 5.5675 -3.4226 1.1048 43 1 7.0080 -4.7852 -1.1067 44 1 6.4082 -3.1357 -1.4231 45 1 4.5496 -4.4885 -1.9843 46 1 4.1884 -3.9694 -0.3276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872236631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:51 Heat of formation + Delta-G solvation = 12.804267 kcal Electronic energy + Delta-G solvation = -21931.019917 eV Core-core repulsion = 19048.423229 eV Total energy + Delta-G solvation = -2882.596688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.91447 -38.53412 -36.86454 -34.49547 -33.44548 -32.80046 -30.18634 -28.30466 -27.28140 -25.75459 -24.37621 -24.04148 -23.29709 -21.52918 -20.44424 -19.30029 -18.56521 -17.68317 -16.89019 -16.47220 -16.25070 -15.91403 -15.59554 -15.14984 -15.01165 -14.87115 -14.41567 -14.17082 -13.83743 -13.63180 -13.25663 -13.10714 -12.95232 -12.79976 -12.66098 -12.51423 -12.45061 -12.19050 -11.90095 -11.62394 -11.54845 -11.44063 -11.26808 -11.19953 -11.08985 -11.03557 -10.92073 -10.65225 -9.48333 -9.07956 -8.22366 -6.33397 1.39137 1.42810 1.50746 2.39072 3.00047 3.10597 3.48106 3.65267 3.82574 3.93309 4.02661 4.12623 4.22486 4.26855 4.37442 4.39612 4.45366 4.48911 4.55265 4.60904 4.69395 4.77050 4.83746 4.88777 4.97502 5.02361 5.03689 5.10370 5.19288 5.24785 5.25812 5.28402 5.31555 5.34869 5.37886 5.43107 5.48227 5.58372 5.61155 5.64804 5.83467 6.03132 6.30445 6.46355 6.73509 6.89346 7.37269 8.89208 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.006121 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.365988 B = 4573.144577 C = 5815.455421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.207 3.793 10 N -0.684 5.684 11 C 0.075 3.925 12 C 0.034 3.966 13 H 0.092 0.908 14 C -0.135 4.135 15 C 0.004 3.996 16 N -0.496 5.496 17 C 0.069 3.931 18 C -0.143 4.143 19 C -0.109 4.109 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.103 4.103 23 C -0.137 4.137 24 H 0.265 0.735 25 H -0.046 1.046 26 H 0.000 1.000 27 H 0.339 0.661 28 H 0.016 0.984 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.062 -16.212 1.346 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.319 5.319 11 C -0.055 4.055 12 C -0.076 4.076 13 H 0.110 0.890 14 C -0.174 4.174 15 C -0.124 4.124 16 N -0.218 5.218 17 C -0.039 4.039 18 C -0.181 4.181 19 C -0.146 4.146 20 C -0.149 4.149 21 C -0.159 4.159 22 C -0.141 4.141 23 C -0.175 4.175 24 H 0.074 0.926 25 H -0.029 1.029 26 H 0.018 0.982 27 H 0.161 0.839 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.858 -15.864 1.331 20.463 hybrid contribution -0.327 1.054 -0.236 1.129 sum 12.530 -14.810 1.095 19.430 Atomic orbital electron populations 1.70088 1.07790 1.27999 1.51557 1.25938 0.95765 1.03296 0.94630 0.85431 0.78189 0.77803 0.79173 1.19189 1.20675 1.19212 1.21465 0.93625 0.91372 1.50518 0.91941 1.19218 0.90757 0.89293 0.92821 1.60895 1.20058 1.01408 1.49504 1.21791 0.95745 0.89551 0.98405 1.23657 0.94741 0.94266 0.94898 0.88991 1.23349 0.97996 0.94048 1.01963 1.23939 0.96758 0.91318 1.00406 1.68868 1.07481 1.05904 1.39592 1.20895 0.91099 0.96609 0.95318 1.22014 0.97471 1.01768 0.96892 1.21232 0.94425 0.96850 1.02134 1.21871 0.99791 0.93930 0.99281 1.21341 1.00406 0.98405 0.95781 1.21167 0.95921 1.00594 0.96449 1.20855 0.98211 0.97180 1.01279 0.92641 1.02874 0.98237 0.83928 0.96529 0.92254 0.89799 0.89437 0.89301 0.88889 0.90384 0.92591 0.90538 0.91566 0.91206 0.91236 0.92696 0.92518 0.93900 0.90648 0.92639 0.93735 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.53 -31.19 9.32 25.60 0.24 -30.95 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.58 5.38 85.55 0.46 12.04 16 10 N -0.68 -30.83 5.26 -517.91 -2.72 -33.55 16 11 C 0.08 2.85 5.80 86.30 0.50 3.35 16 12 C 0.03 0.98 2.96 44.96 0.13 1.11 16 13 H 0.09 2.73 5.26 -2.39 -0.01 2.72 16 14 C -0.14 -2.97 7.84 31.24 0.25 -2.73 16 15 C 0.00 0.08 7.68 86.41 0.66 0.74 16 16 N -0.50 -13.32 5.94 -868.64 -5.16 -18.48 16 17 C 0.07 1.73 1.82 43.06 0.08 1.81 16 18 C -0.14 -3.17 3.33 30.22 0.10 -3.06 16 19 C -0.11 -1.99 5.32 30.16 0.16 -1.83 16 20 C -0.11 -2.25 5.85 31.31 0.18 -2.06 16 21 C -0.12 -3.12 5.32 30.14 0.16 -2.96 16 22 C -0.10 -2.62 5.61 30.20 0.17 -2.46 16 23 C -0.14 -4.07 3.77 28.73 0.11 -3.96 16 24 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 25 H -0.05 -2.82 8.14 -2.38 -0.02 -2.84 16 26 H 0.00 -0.03 8.09 -2.39 -0.02 -0.05 16 27 H 0.34 15.04 5.65 -89.70 -0.51 14.53 16 28 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 2.30 7.98 -2.39 -0.02 2.28 16 30 H 0.08 1.91 8.10 -2.39 -0.02 1.89 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.48 5.80 -2.39 -0.01 1.47 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.79 7.46 -2.39 -0.02 1.77 16 35 H 0.06 1.54 5.86 -2.39 -0.01 1.53 16 36 H 0.08 1.48 5.40 -2.39 -0.01 1.47 16 37 H 0.07 1.13 6.63 -2.39 -0.02 1.11 16 38 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.04 1.35 6.62 -2.39 -0.02 1.33 16 43 H 0.07 1.62 6.98 -2.39 -0.02 1.60 16 44 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 2.94 3.59 -2.39 -0.01 2.93 16 Total: -1.00 -64.45 331.76 -1.47 -65.92 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.44 Total: 26.72 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 3.66 Total: -30.39 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -7.60 Total: -109.49 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -64.45 -1.47 -65.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872236631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.724 kcal (2) G-P(sol) polarization free energy of solvation -64.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds