Wall clock time and date at job start Mon Mar 30 2020 00:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47032 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47236 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47424 * 180.02562 * 17 16 15 19 19 C 1.39669 * 127.05205 * 124.99508 * 18 17 16 20 20 N 1.31384 * 105.90333 * 179.97438 * 19 18 17 21 21 N 1.28604 * 108.71572 * 359.97438 * 20 19 18 22 22 C 1.46495 * 124.62066 * 179.97438 * 21 20 19 23 23 N 1.28608 * 110.75834 * 359.75128 * 21 20 19 24 24 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 25 25 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 27 27 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 28 28 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 29 29 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 30 30 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 31 31 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 32 32 H 1.00901 * 111.00285 * 56.04255 * 14 13 2 33 33 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 34 34 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 35 35 H 1.08999 * 109.47278 * 300.00268 * 16 15 14 36 36 H 1.09002 * 109.46933 * 60.00308 * 16 15 14 37 37 H 1.09007 * 109.46912 * 299.99998 * 17 16 15 38 38 H 1.08994 * 109.47116 * 59.99929 * 17 16 15 39 39 H 1.08005 * 127.05184 * 359.96564 * 19 18 17 40 40 H 1.08998 * 109.46968 * 90.02552 * 22 21 20 41 41 H 1.09001 * 109.47178 * 210.03086 * 22 21 20 42 42 H 1.09000 * 109.47174 * 330.02827 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 0.1739 0.0910 -5.7270 11 1 1.4183 2.0075 -4.9150 12 1 2.5110 0.3575 -6.3164 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7035 0.1914 4.8891 17 6 2.1981 -0.4999 6.1613 18 6 1.7817 0.3055 7.3650 19 6 1.0508 -0.1445 8.4669 20 7 0.9246 0.8929 9.2632 21 7 1.5148 1.9007 8.7247 22 6 1.5865 3.2380 9.3184 23 7 2.0374 1.5733 7.5961 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6053 -1.7198 -1.2952 28 1 3.1262 -0.7995 -1.2056 29 1 2.9362 -2.0177 -3.0611 30 1 1.6053 -1.7199 1.2950 31 1 3.1263 -0.7996 1.2055 32 1 0.6529 0.1793 2.4753 33 1 1.6921 -1.6248 3.7300 34 1 3.2127 -0.7039 3.6399 35 1 2.1375 1.1892 4.8260 36 1 0.6166 0.2689 4.9165 37 1 1.7644 -1.4979 6.2246 38 1 3.2850 -0.5771 6.1337 39 1 0.6678 -1.1409 8.6308 40 1 2.4785 3.3120 9.9405 41 1 1.6330 3.9853 8.5262 42 1 0.7014 3.4119 9.9303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877551209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:38 Heat of formation + Delta-G solvation = 76.546538 kcal Electronic energy + Delta-G solvation = -19153.746543 eV Core-core repulsion = 16170.373584 eV Total energy + Delta-G solvation = -2983.372960 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.79560 -37.39831 -35.67441 -34.17523 -33.11803 -32.35309 -31.14515 -28.27042 -26.53501 -26.08454 -24.35212 -22.62407 -22.37212 -21.69329 -20.64594 -19.11984 -17.56028 -17.09372 -16.71776 -15.96809 -15.23846 -14.98111 -14.57733 -13.98037 -13.92043 -13.65796 -13.54303 -13.28018 -13.19865 -12.71506 -12.44286 -12.06155 -11.67115 -11.63536 -11.44543 -11.15158 -11.01538 -10.98119 -10.78226 -10.64751 -10.46036 -10.16966 -10.05031 -9.80405 -9.44072 -9.34505 -8.43704 -8.26301 -8.14471 -6.29163 -3.96947 1.54623 2.05146 2.16761 3.46897 3.51021 3.66554 3.79827 4.24497 4.56601 4.60226 4.60939 4.70666 4.85873 4.87357 4.97377 5.22861 5.32384 5.43934 5.47274 5.52507 5.68813 5.72734 5.75875 5.82308 5.95591 5.99164 6.13067 6.18571 6.26240 6.40952 6.42441 6.50633 6.86355 7.05366 7.07378 7.34125 7.46972 7.60974 7.68862 8.06918 8.30879 8.54436 8.96357 9.74451 11.11360 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.047513 B = 0.002365 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.170742 B =11838.023835 C =12114.475781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 H 0.066 0.934 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.917 5.917 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.691 5.691 15 C 0.058 3.942 16 C -0.110 4.110 17 C -0.029 4.029 18 C 0.009 3.991 19 C -0.026 4.026 20 N -0.294 5.294 21 N -0.163 5.163 22 C 0.109 3.891 23 N -0.283 5.283 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.005 0.995 28 H 0.006 0.994 29 H 0.268 0.732 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.337 0.663 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.196 0.804 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 4.435 26.560 27.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 H 0.085 0.915 4 C -0.023 4.023 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.554 5.554 9 Si 0.899 3.101 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.323 5.323 15 C -0.072 4.072 16 C -0.149 4.149 17 C -0.069 4.069 18 C -0.154 4.154 19 C -0.208 4.208 20 N -0.135 5.135 21 N -0.063 5.063 22 C -0.031 4.031 23 N -0.125 5.125 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.213 0.787 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.216 6.181 25.469 26.301 hybrid contribution -0.789 -1.630 1.489 2.344 sum -3.004 4.551 26.958 27.504 Atomic orbital electron populations 1.21728 0.96513 1.00383 1.00432 1.21084 0.94992 1.00032 0.93570 0.91520 1.19246 0.95368 0.95405 0.92318 1.22064 1.38588 1.10208 0.92252 0.93179 1.25829 0.94745 0.97210 1.01401 1.70748 1.36004 1.15102 1.33513 0.83528 0.76274 0.74976 0.75333 1.21581 1.21509 1.21089 1.22136 1.00241 0.94377 0.89714 1.60528 1.19582 1.50656 1.01528 1.21947 1.00674 0.94946 0.89611 1.21512 1.00970 1.00400 0.92019 1.19900 1.01781 0.96707 0.88473 1.23242 1.02000 0.90846 0.99340 1.24679 1.03944 0.99457 0.92731 1.74020 1.17487 0.95850 1.26129 1.47921 1.36011 1.10469 1.11915 1.22104 1.04911 0.76354 0.99767 1.74045 1.19144 1.16269 1.03090 0.91757 0.94134 0.94804 0.97699 0.97583 0.92163 0.95945 0.91590 0.84395 0.95569 0.91089 0.90429 0.92214 0.89664 0.89869 0.78670 0.89372 0.87864 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.77 37.16 0.33 -2.23 16 2 C -0.08 -1.64 2.55 -90.62 -0.23 -1.87 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 4 C 0.01 0.37 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -17.01 8.41 -34.44 -0.29 -17.30 16 6 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 8 N -0.92 -28.55 13.65 55.43 0.76 -27.80 16 9 Si 1.07 25.81 29.90 -169.99 -5.08 20.72 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.06 1.13 5.14 -3.83 -0.02 1.11 16 14 N -0.69 -10.41 6.50 -113.78 -0.74 -11.15 16 15 C 0.06 0.70 5.69 -3.82 -0.02 0.67 16 16 C -0.11 -1.16 5.45 -26.73 -0.15 -1.31 16 17 C -0.03 -0.25 5.81 -27.88 -0.16 -0.41 16 18 C 0.01 0.09 6.61 -82.26 -0.54 -0.45 16 19 C -0.03 -0.25 12.15 -17.21 -0.21 -0.45 16 20 N -0.29 -3.16 12.05 30.67 0.37 -2.79 16 21 N -0.16 -1.64 4.35 -16.64 -0.07 -1.71 16 22 C 0.11 0.55 11.57 59.84 0.69 1.24 16 23 N -0.28 -3.30 12.05 33.71 0.41 -2.89 16 24 H 0.06 1.34 6.95 -51.93 -0.36 0.98 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 27 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 28 H 0.01 0.16 8.00 -51.93 -0.42 -0.25 16 29 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.34 4.84 6.98 -39.29 -0.27 4.56 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.20 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -34.30 345.99 -7.15 -41.44 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.19 Total: -0.54 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -0.81 Total: -20.50 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.72 Total: -46.34 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.30 -7.15 -41.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877551209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.990 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds