Wall clock time and date at job start Mon Mar 30 2020 00:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47032 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47236 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47424 * 180.02562 * 17 16 15 19 19 C 1.39669 * 127.05205 * 124.99508 * 18 17 16 20 20 N 1.31384 * 105.90333 * 179.97438 * 19 18 17 21 21 N 1.28604 * 108.71572 * 359.97438 * 20 19 18 22 22 C 1.46495 * 124.62066 * 179.97438 * 21 20 19 23 23 N 1.28608 * 110.75834 * 359.75128 * 21 20 19 24 24 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 25 25 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 27 27 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 28 28 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 29 29 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 30 30 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 31 31 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 32 32 H 1.00901 * 111.00285 * 56.04255 * 14 13 2 33 33 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 34 34 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 35 35 H 1.08999 * 109.47278 * 300.00268 * 16 15 14 36 36 H 1.09002 * 109.46933 * 60.00308 * 16 15 14 37 37 H 1.09007 * 109.46912 * 299.99998 * 17 16 15 38 38 H 1.08994 * 109.47116 * 59.99929 * 17 16 15 39 39 H 1.08005 * 127.05184 * 359.96564 * 19 18 17 40 40 H 1.08998 * 109.46968 * 90.02552 * 22 21 20 41 41 H 1.09001 * 109.47178 * 210.03086 * 22 21 20 42 42 H 1.09000 * 109.47174 * 330.02827 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 0.1739 0.0910 -5.7270 11 1 1.4183 2.0075 -4.9150 12 1 2.5110 0.3575 -6.3164 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7035 0.1914 4.8891 17 6 2.1981 -0.4999 6.1613 18 6 1.7817 0.3055 7.3650 19 6 1.0508 -0.1445 8.4669 20 7 0.9246 0.8929 9.2632 21 7 1.5148 1.9007 8.7247 22 6 1.5865 3.2380 9.3184 23 7 2.0374 1.5733 7.5961 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6053 -1.7198 -1.2952 28 1 3.1262 -0.7995 -1.2056 29 1 2.9362 -2.0177 -3.0611 30 1 1.6053 -1.7199 1.2950 31 1 3.1263 -0.7996 1.2055 32 1 0.6529 0.1793 2.4753 33 1 1.6921 -1.6248 3.7300 34 1 3.2127 -0.7039 3.6399 35 1 2.1375 1.1892 4.8260 36 1 0.6166 0.2689 4.9165 37 1 1.7644 -1.4979 6.2246 38 1 3.2850 -0.5771 6.1337 39 1 0.6678 -1.1409 8.6308 40 1 2.4785 3.3120 9.9405 41 1 1.6330 3.9853 8.5262 42 1 0.7014 3.4119 9.9303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877551209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:38 Heat of formation + Delta-G solvation = 53.093561 kcal Electronic energy + Delta-G solvation = -19154.763541 eV Core-core repulsion = 16170.373584 eV Total energy + Delta-G solvation = -2984.389957 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.49676 -38.75137 -36.86749 -35.44962 -34.26991 -33.58663 -32.27436 -29.15963 -28.36070 -27.19485 -25.78078 -24.15320 -23.26944 -22.70210 -21.45338 -20.77526 -18.87394 -18.20593 -17.76989 -17.16235 -16.19860 -15.87470 -15.70575 -15.58409 -15.44432 -15.11681 -14.59722 -14.11268 -13.99332 -13.75963 -13.59267 -13.44523 -13.16895 -13.01431 -12.90755 -12.54749 -12.28377 -12.23027 -11.94190 -11.84557 -11.74021 -11.64529 -11.51250 -11.28023 -11.21258 -10.55524 -10.51417 -10.04207 -9.35086 -8.64712 -6.33478 0.82554 1.45685 1.52642 1.53178 1.62222 1.79682 2.58249 3.15509 3.19338 3.23523 3.80980 4.02435 4.11059 4.18032 4.21661 4.27619 4.29068 4.35355 4.48081 4.53820 4.56583 4.66239 4.69899 4.78095 4.78933 4.86903 4.93462 5.03282 5.07534 5.24215 5.26387 5.30843 5.33309 5.42593 5.49726 5.65112 5.78178 6.02720 6.14697 6.23526 6.49795 6.63524 7.35620 7.47205 8.76048 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.047513 B = 0.002365 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.170742 B =11838.023835 C =12114.475781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.071 4.071 3 H 0.052 0.948 4 C 0.016 3.984 5 C -0.604 4.604 6 H 0.051 0.949 7 C -0.044 4.044 8 N -0.942 5.942 9 Si 1.119 2.881 10 H -0.272 1.272 11 H -0.270 1.270 12 H -0.284 1.284 13 C 0.078 3.922 14 N -0.697 5.697 15 C 0.059 3.941 16 C -0.098 4.098 17 C -0.023 4.023 18 C -0.004 4.004 19 C -0.028 4.028 20 N -0.313 5.313 21 N -0.167 5.167 22 C 0.096 3.904 23 N -0.312 5.312 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.068 0.932 27 H -0.012 1.012 28 H -0.017 1.017 29 H 0.254 0.746 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.344 0.656 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.226 0.774 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.996 4.852 27.676 28.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 H 0.071 0.929 4 C -0.022 4.022 5 C -0.642 4.642 6 H 0.069 0.931 7 C -0.241 4.241 8 N -0.580 5.580 9 Si 0.940 3.060 10 H -0.198 1.198 11 H -0.195 1.195 12 H -0.210 1.210 13 C -0.052 4.052 14 N -0.329 5.329 15 C -0.070 4.070 16 C -0.136 4.136 17 C -0.062 4.062 18 C -0.166 4.166 19 C -0.210 4.210 20 N -0.155 5.155 21 N -0.069 5.069 22 C -0.042 4.042 23 N -0.155 5.155 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.006 0.994 28 H 0.001 0.999 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.163 0.837 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.242 0.758 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.298 6.607 26.627 27.631 hybrid contribution -0.436 -1.736 1.226 2.170 sum -3.734 4.870 27.852 28.520 Atomic orbital electron populations 1.21638 0.94803 1.00737 1.01140 1.20918 0.96375 0.98765 0.92972 0.92899 1.19190 0.93860 0.94853 0.94265 1.22458 1.38024 1.10323 0.93421 0.93052 1.27417 0.94088 0.97355 1.05242 1.70887 1.37890 1.16371 1.32849 0.82912 0.76641 0.74637 0.71781 1.19751 1.19493 1.20966 1.21824 0.99541 0.94298 0.89499 1.60455 1.20124 1.50729 1.01605 1.22000 1.00651 0.95671 0.88642 1.21351 1.00785 0.99231 0.92265 1.19913 1.02079 0.97426 0.86824 1.23531 1.02259 0.90741 1.00097 1.25211 1.03294 1.00428 0.92060 1.73999 1.18161 0.96511 1.26823 1.48382 1.35446 1.11485 1.11554 1.22486 1.06496 0.74808 1.00421 1.74005 1.20118 1.17252 1.04115 0.93758 0.93921 0.91348 0.99384 0.99878 0.93634 0.95540 0.92511 0.83722 0.94062 0.91247 0.92476 0.92161 0.87097 0.89607 0.75798 0.87860 0.87033 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.77 71.98 0.63 -4.04 16 2 C -0.07 -2.99 2.55 -10.79 -0.03 -3.01 16 3 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.02 0.84 3.76 29.85 0.11 0.95 16 5 C -0.60 -35.04 8.41 25.60 0.22 -34.82 16 6 H 0.05 2.91 7.06 -2.91 -0.02 2.89 16 7 C -0.04 -2.63 5.46 84.65 0.46 -2.17 16 8 N -0.94 -59.69 13.65 21.45 0.29 -59.40 16 9 Si 1.12 51.44 29.90 68.60 2.05 53.49 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 C 0.08 2.69 5.14 86.30 0.44 3.13 16 14 N -0.70 -19.81 6.50 -513.90 -3.34 -23.15 16 15 C 0.06 1.31 5.69 86.30 0.49 1.80 16 16 C -0.10 -1.89 5.45 30.60 0.17 -1.72 16 17 C -0.02 -0.35 5.81 29.85 0.17 -0.17 16 18 C 0.00 -0.07 6.61 42.97 0.28 0.21 16 19 C -0.03 -0.49 12.15 85.11 1.03 0.55 16 20 N -0.31 -6.33 12.05 -56.86 -0.69 -7.02 16 21 N -0.17 -3.21 4.35 -206.56 -0.90 -4.11 16 22 C 0.10 0.88 11.57 127.77 1.48 2.35 16 23 N -0.31 -7.01 12.05 -47.25 -0.57 -7.57 16 24 H 0.04 1.80 6.95 -2.39 -0.02 1.79 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 2.05 6.68 -2.39 -0.02 2.04 16 27 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 28 H -0.02 -0.97 8.00 -2.39 -0.02 -0.99 16 29 H 0.25 16.32 7.22 -92.71 -0.67 15.65 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.34 9.02 6.98 -89.69 -0.63 8.40 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 39 H 0.23 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -74.45 345.99 2.77 -71.67 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.46 Total: 13.04 kcal Atomic # 6 Polarization: -42.42 SS G_CDS: 5.46 Total: -36.95 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -5.20 Total: -101.25 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 2.05 Total: 53.49 kcal Total: -74.45 2.77 -71.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877551209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.767 kcal (2) G-P(sol) polarization free energy of solvation -74.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds