Wall clock time and date at job start Mon Mar 30 2020 00:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46910 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47081 * 119.99681 * 9 7 5 12 12 H 1.48493 * 109.47178 * 239.99915 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46901 * 109.46818 * 65.00620 * 13 2 1 15 15 C 1.46902 * 111.00023 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47288 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47230 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47348 * 180.02562 * 17 16 15 19 19 C 1.39670 * 127.04839 * 124.99782 * 18 17 16 20 20 N 1.31380 * 105.89770 * 179.97438 * 19 18 17 21 21 N 1.28594 * 108.71922 * 0.02562 * 20 19 18 22 22 C 1.46497 * 124.61959 * 179.97438 * 21 20 19 23 23 N 1.28598 * 110.76298 * 359.74343 * 21 20 19 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 28 28 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 29 29 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 31 31 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 32 32 H 1.00892 * 111.00581 * 56.04080 * 14 13 2 33 33 H 1.09000 * 109.47041 * 300.00315 * 15 14 13 34 34 H 1.09004 * 109.46766 * 59.99797 * 15 14 13 35 35 H 1.08993 * 109.47074 * 300.00164 * 16 15 14 36 36 H 1.09004 * 109.46404 * 60.00223 * 16 15 14 37 37 H 1.09003 * 109.46967 * 300.00534 * 17 16 15 38 38 H 1.09003 * 109.46940 * 60.00052 * 17 16 15 39 39 H 1.08000 * 127.05127 * 359.96662 * 19 18 17 40 40 H 1.09003 * 109.46974 * 90.02374 * 22 21 20 41 41 H 1.09000 * 109.47543 * 210.02704 * 22 21 20 42 42 H 1.09003 * 109.47317 * 330.02942 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.7431 1.7750 4.8433 11 1 0.6456 -0.2854 6.1189 12 1 2.7178 0.9682 5.9959 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6265 -3.6671 16 6 1.7026 0.1909 -4.8892 17 6 2.1973 -0.5003 -6.1614 18 6 1.7809 0.3052 -7.3651 19 6 2.6100 0.8004 -8.3741 20 7 1.8199 1.4355 -9.2098 21 7 0.6114 1.3541 -8.7779 22 6 -0.5522 1.9431 -9.4451 23 7 0.5629 0.6812 -7.6831 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 2.9235 -1.8416 4.7319 30 1 3.1264 -0.7995 -1.2055 31 1 1.6055 -1.7198 -1.2951 32 1 1.9882 0.9872 -2.3967 33 1 3.2128 -0.7038 -3.6399 34 1 1.6922 -1.6246 -3.7300 35 1 0.6157 0.2678 -4.9162 36 1 2.1361 1.1891 -4.8264 37 1 3.2843 -0.5768 -6.1341 38 1 1.7642 -1.4986 -6.2243 39 1 3.6811 0.6850 -8.4513 40 1 -0.9737 1.2214 -10.1448 41 1 -1.3027 2.2080 -8.7002 42 1 -0.2462 2.8381 -9.9867 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877551211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:41 Heat of formation + Delta-G solvation = 80.137169 kcal Electronic energy + Delta-G solvation = -19116.705397 eV Core-core repulsion = 16133.488139 eV Total energy + Delta-G solvation = -2983.217258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.77512 -37.24497 -35.55868 -34.06249 -33.03706 -32.24983 -31.17690 -28.28323 -26.81122 -25.94858 -24.30964 -22.60299 -22.32629 -21.66883 -20.60919 -18.96092 -17.53317 -17.07290 -16.28516 -15.76774 -15.20241 -14.89015 -14.53656 -14.26010 -14.12671 -13.63840 -13.49110 -13.14545 -13.07175 -12.43542 -12.34067 -12.04068 -11.56577 -11.43309 -11.35461 -11.22364 -10.97978 -10.84581 -10.78150 -10.61756 -10.43952 -10.25334 -10.16024 -9.65334 -9.36278 -9.09486 -8.89933 -8.30312 -8.04759 -5.94941 -3.95714 1.56895 2.07232 2.19272 3.33992 3.41450 3.45820 3.82193 4.29167 4.50302 4.61692 4.61738 4.74240 4.88078 4.90121 5.01442 5.26847 5.36717 5.40923 5.49585 5.56814 5.74055 5.80109 5.82239 5.95018 5.98614 6.17211 6.21640 6.28937 6.43607 6.47652 6.61051 6.74446 7.06942 7.23399 7.25008 7.43953 7.70712 7.74899 7.89715 8.05846 8.09261 8.50182 9.10977 9.67530 11.16660 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.048871 B = 0.002359 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.798220 B =11865.719705 C =12181.247430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.026 3.974 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.689 5.689 15 C 0.058 3.942 16 C -0.110 4.110 17 C -0.029 4.029 18 C 0.009 3.991 19 C -0.026 4.026 20 N -0.294 5.294 21 N -0.163 5.163 22 C 0.109 3.891 23 N -0.283 5.283 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.016 0.984 28 H 0.012 0.988 29 H 0.258 0.742 30 H 0.023 0.977 31 H 0.066 0.934 32 H 0.336 0.664 33 H 0.026 0.974 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.196 0.804 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.314 4.279 -26.312 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.320 5.320 15 C -0.072 4.072 16 C -0.149 4.149 17 C -0.069 4.069 18 C -0.154 4.154 19 C -0.208 4.208 20 N -0.135 5.135 21 N -0.063 5.063 22 C -0.031 4.031 23 N -0.126 5.126 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.035 0.965 28 H 0.031 0.969 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.213 0.787 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.002 4.455 -26.883 27.542 hybrid contribution 1.525 0.273 1.301 2.023 sum -2.477 4.728 -25.582 26.133 Atomic orbital electron populations 1.21586 0.95755 1.00546 1.00111 1.21200 0.95997 0.98887 0.94089 0.92895 1.19133 0.95904 0.95600 0.90489 1.21284 1.34353 1.08262 0.90990 0.92524 1.25031 0.95402 0.95130 0.99119 1.69982 1.39250 1.21274 1.23212 0.86571 0.78217 0.80137 0.83295 1.19764 1.21095 1.21147 1.22144 0.97098 0.97716 0.89491 1.60514 1.64106 1.05728 1.01607 1.21940 0.97075 0.98378 0.89758 1.21508 1.02552 0.98731 0.92071 1.19908 1.01274 0.97287 0.88421 1.23254 0.88614 1.03515 0.99998 1.24680 1.01462 1.01392 0.93282 1.74014 0.91956 1.21436 1.26119 1.47911 1.06180 1.37020 1.15222 1.22101 0.83479 0.99393 0.98154 1.74041 1.24679 1.11366 1.02484 0.94187 0.92834 0.93939 0.96547 0.96934 0.93192 0.95828 0.91593 0.84677 0.95571 0.91158 0.90483 0.92216 0.89662 0.89899 0.78672 0.89393 0.87872 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 2 C -0.08 -1.72 2.48 -90.62 -0.22 -1.95 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 5 C -0.51 -14.48 8.41 -34.44 -0.29 -14.77 16 6 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.06 1.13 5.07 -3.82 -0.02 1.11 16 14 N -0.69 -10.15 5.96 -113.78 -0.68 -10.83 16 15 C 0.06 0.69 5.68 -3.82 -0.02 0.67 16 16 C -0.11 -1.15 5.45 -26.73 -0.15 -1.29 16 17 C -0.03 -0.25 5.81 -27.88 -0.16 -0.41 16 18 C 0.01 0.10 6.61 -82.25 -0.54 -0.45 16 19 C -0.03 -0.25 12.15 -17.21 -0.21 -0.46 16 20 N -0.29 -3.17 12.05 30.67 0.37 -2.80 16 21 N -0.16 -1.64 4.35 -16.64 -0.07 -1.72 16 22 C 0.11 0.55 11.57 59.85 0.69 1.24 16 23 N -0.28 -3.29 12.04 33.71 0.41 -2.89 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 26 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.34 4.73 8.73 -39.30 -0.34 4.38 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.20 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -33.56 349.56 -7.18 -40.74 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -7.38 Total: -1.76 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -0.81 Total: -16.41 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.76 Total: -44.73 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.56 -7.18 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877551211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.878 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds