Wall clock time and date at job start Mon Mar 30 2020 00:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46910 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47081 * 119.99681 * 9 7 5 12 12 H 1.48493 * 109.47178 * 239.99915 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46901 * 109.46818 * 65.00620 * 13 2 1 15 15 C 1.46902 * 111.00023 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47288 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47230 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47348 * 180.02562 * 17 16 15 19 19 C 1.39670 * 127.04839 * 124.99782 * 18 17 16 20 20 N 1.31380 * 105.89770 * 179.97438 * 19 18 17 21 21 N 1.28594 * 108.71922 * 0.02562 * 20 19 18 22 22 C 1.46497 * 124.61959 * 179.97438 * 21 20 19 23 23 N 1.28598 * 110.76298 * 359.74343 * 21 20 19 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 28 28 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 29 29 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 31 31 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 32 32 H 1.00892 * 111.00581 * 56.04080 * 14 13 2 33 33 H 1.09000 * 109.47041 * 300.00315 * 15 14 13 34 34 H 1.09004 * 109.46766 * 59.99797 * 15 14 13 35 35 H 1.08993 * 109.47074 * 300.00164 * 16 15 14 36 36 H 1.09004 * 109.46404 * 60.00223 * 16 15 14 37 37 H 1.09003 * 109.46967 * 300.00534 * 17 16 15 38 38 H 1.09003 * 109.46940 * 60.00052 * 17 16 15 39 39 H 1.08000 * 127.05127 * 359.96662 * 19 18 17 40 40 H 1.09003 * 109.46974 * 90.02374 * 22 21 20 41 41 H 1.09000 * 109.47543 * 210.02704 * 22 21 20 42 42 H 1.09003 * 109.47317 * 330.02942 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.7431 1.7750 4.8433 11 1 0.6456 -0.2854 6.1189 12 1 2.7178 0.9682 5.9959 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6265 -3.6671 16 6 1.7026 0.1909 -4.8892 17 6 2.1973 -0.5003 -6.1614 18 6 1.7809 0.3052 -7.3651 19 6 2.6100 0.8004 -8.3741 20 7 1.8199 1.4355 -9.2098 21 7 0.6114 1.3541 -8.7779 22 6 -0.5522 1.9431 -9.4451 23 7 0.5629 0.6812 -7.6831 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 2.9235 -1.8416 4.7319 30 1 3.1264 -0.7995 -1.2055 31 1 1.6055 -1.7198 -1.2951 32 1 1.9882 0.9872 -2.3967 33 1 3.2128 -0.7038 -3.6399 34 1 1.6922 -1.6246 -3.7300 35 1 0.6157 0.2678 -4.9162 36 1 2.1361 1.1891 -4.8264 37 1 3.2843 -0.5768 -6.1341 38 1 1.7642 -1.4986 -6.2243 39 1 3.6811 0.6850 -8.4513 40 1 -0.9737 1.2214 -10.1448 41 1 -1.3027 2.2080 -8.7002 42 1 -0.2462 2.8381 -9.9867 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877551211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:40 Heat of formation + Delta-G solvation = 57.598921 kcal Electronic energy + Delta-G solvation = -19117.682729 eV Core-core repulsion = 16133.488139 eV Total energy + Delta-G solvation = -2984.194590 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.47794 -38.55166 -36.72819 -35.27735 -34.20270 -33.58227 -32.29529 -29.28639 -28.53515 -27.06670 -25.74106 -24.00918 -23.24512 -22.67531 -21.40896 -20.61851 -18.46936 -18.17768 -17.74818 -16.84768 -16.58945 -15.94849 -15.69489 -15.58238 -15.42926 -14.72195 -14.36364 -14.27744 -13.96173 -13.64509 -13.51390 -13.32266 -13.05822 -12.98308 -12.77032 -12.55143 -12.29636 -12.23182 -12.18487 -11.85602 -11.74062 -11.58622 -11.42775 -11.20003 -11.06601 -10.85718 -10.52804 -10.01862 -9.25353 -8.16517 -6.25346 0.84672 1.40567 1.40988 1.47877 1.54148 1.55213 2.42942 3.16802 3.19698 3.29476 3.85118 4.07202 4.19278 4.23471 4.29705 4.31345 4.37780 4.50807 4.55936 4.57332 4.60984 4.72471 4.83792 4.88145 4.93405 4.97800 5.05072 5.11065 5.29466 5.30503 5.35692 5.47114 5.48468 5.52324 5.58625 5.80284 5.83304 5.90741 6.15228 6.33936 6.56510 6.90868 7.37725 7.42764 8.95728 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.048871 B = 0.002359 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.798220 B =11865.719705 C =12181.247430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 H 0.053 0.947 4 C 0.031 3.969 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.078 3.922 14 N -0.691 5.691 15 C 0.060 3.940 16 C -0.097 4.097 17 C -0.023 4.023 18 C -0.003 4.003 19 C -0.029 4.029 20 N -0.314 5.314 21 N -0.167 5.167 22 C 0.096 3.904 23 N -0.311 5.311 24 H 0.034 0.966 25 H 0.037 0.963 26 H 0.065 0.935 27 H -0.010 1.010 28 H -0.013 1.013 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.061 0.939 32 H 0.342 0.658 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.225 0.775 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 5.254 -27.187 27.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 H 0.071 0.929 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.202 4.202 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.052 4.052 14 N -0.322 5.322 15 C -0.069 4.069 16 C -0.135 4.135 17 C -0.063 4.063 18 C -0.166 4.166 19 C -0.211 4.211 20 N -0.155 5.155 21 N -0.069 5.069 22 C -0.042 4.042 23 N -0.154 5.154 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.008 0.992 28 H 0.006 0.994 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.159 0.841 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.104 0.896 39 H 0.241 0.759 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.169 5.443 -27.784 28.617 hybrid contribution 1.564 -0.035 1.511 2.175 sum -2.605 5.407 -26.273 26.950 Atomic orbital electron populations 1.21484 0.94859 1.00323 1.00385 1.21024 0.96606 0.98437 0.93337 0.92853 1.19029 0.94165 0.94704 0.92741 1.21672 1.34210 1.08533 0.92103 0.92170 1.25965 0.95341 0.96160 1.02685 1.70112 1.40390 1.22940 1.24186 0.85444 0.78057 0.78865 0.78969 1.18640 1.20547 1.20503 1.21835 0.96620 0.97297 0.89398 1.60447 1.64411 1.05933 1.01442 1.21986 0.97744 0.98337 0.88833 1.21341 1.01300 0.98631 0.92274 1.19919 1.02727 0.96842 0.86798 1.23540 0.88540 1.03805 1.00684 1.25205 1.02735 1.00537 0.92594 1.73992 0.92549 1.22174 1.26834 1.48376 1.06893 1.36665 1.14936 1.22485 0.82649 1.00379 0.98691 1.73999 1.25650 1.12299 1.03466 0.94650 0.94432 0.91629 0.99163 0.99441 0.92961 0.96183 0.92070 0.84065 0.94392 0.91154 0.92336 0.92312 0.87247 0.89554 0.75868 0.87861 0.86997 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.44 8.89 71.98 0.64 -3.80 16 2 C -0.08 -3.11 2.48 -10.79 -0.03 -3.14 16 3 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.03 1.66 4.45 29.85 0.13 1.79 16 5 C -0.53 -30.16 8.41 25.60 0.22 -29.95 16 6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -57.63 13.29 21.44 0.28 -57.35 16 9 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.08 2.68 5.07 86.30 0.44 3.12 16 14 N -0.69 -19.29 5.96 -513.88 -3.06 -22.35 16 15 C 0.06 1.31 5.68 86.30 0.49 1.81 16 16 C -0.10 -1.86 5.45 30.59 0.17 -1.69 16 17 C -0.02 -0.35 5.81 29.85 0.17 -0.18 16 18 C 0.00 -0.06 6.61 42.97 0.28 0.22 16 19 C -0.03 -0.51 12.15 85.11 1.03 0.53 16 20 N -0.31 -6.39 12.05 -56.87 -0.69 -7.07 16 21 N -0.17 -3.21 4.35 -206.55 -0.90 -4.11 16 22 C 0.10 0.87 11.57 127.77 1.48 2.35 16 23 N -0.31 -6.96 12.04 -47.25 -0.57 -7.53 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 25 H 0.04 1.56 6.95 -2.39 -0.02 1.54 16 26 H 0.06 2.25 7.75 -2.39 -0.02 2.23 16 27 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 29 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.34 8.99 8.73 -89.70 -0.78 8.21 16 33 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.22 2.18 8.06 -2.91 -0.02 2.15 16 40 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -72.15 349.56 2.78 -69.36 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.20 Total: 10.83 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 5.49 Total: -28.74 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -4.93 Total: -98.42 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -72.15 2.78 -69.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877551211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.963 kcal (2) G-P(sol) polarization free energy of solvation -72.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds