Wall clock time and date at job start Mon Mar 30 2020 00:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46903 * 2 1 4 4 N 1.28598 * 124.62305 * 90.02356 * 3 2 1 5 5 C 1.31377 * 108.71819 * 179.97438 * 4 3 2 6 6 C 1.50706 * 127.04465 * 180.02562 * 5 4 3 7 7 C 1.39669 * 105.90179 * 0.26283 * 5 4 3 8 8 C 1.50700 * 127.04934 * 179.73732 * 7 5 4 9 9 N 1.46903 * 109.47320 * 90.00126 * 8 7 5 10 10 C 1.46897 * 111.00197 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47181 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.46976 * 305.00015 * 11 10 9 13 13 C 1.53005 * 109.46865 * 64.99982 * 11 10 9 14 14 C 1.53004 * 109.47005 * 184.99689 * 11 10 9 15 15 C 1.50701 * 109.46635 * 175.00106 * 14 11 10 16 16 H 1.07996 * 120.00281 * 359.97438 * 15 14 11 17 17 C 1.37885 * 119.99823 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99717 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00251 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47156 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47044 * 119.99742 * 19 17 15 22 22 H 1.48493 * 109.47555 * 239.99983 * 19 17 15 23 23 N 1.28600 * 124.61491 * 270.02336 * 3 2 1 24 24 H 1.08990 * 109.47355 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46918 * 300.00445 * 1 2 3 26 26 H 1.09000 * 109.47453 * 59.99777 * 1 2 3 27 27 H 1.08996 * 109.46794 * 240.00409 * 2 1 3 28 28 H 1.08998 * 109.47126 * 119.99529 * 2 1 3 29 29 H 1.08999 * 109.46995 * 90.02666 * 6 5 4 30 30 H 1.08994 * 109.46790 * 210.02353 * 6 5 4 31 31 H 1.08997 * 109.47305 * 330.02793 * 6 5 4 32 32 H 1.09000 * 109.47553 * 210.00271 * 8 7 5 33 33 H 1.09002 * 109.47445 * 329.99878 * 8 7 5 34 34 H 1.00896 * 110.99953 * 303.95460 * 9 8 7 35 35 H 1.09000 * 109.46931 * 299.99987 * 10 9 8 36 36 H 1.08998 * 109.47256 * 59.99523 * 10 9 8 37 37 H 1.09001 * 109.47090 * 299.99673 * 13 11 10 38 38 H 1.08998 * 109.47297 * 60.00229 * 13 11 10 39 39 H 1.09006 * 109.46994 * 179.97438 * 13 11 10 40 40 H 1.09001 * 109.47091 * 294.99377 * 14 11 10 41 41 H 1.08994 * 109.46803 * 55.00201 * 14 11 10 42 42 H 0.96999 * 119.99688 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2623 2.0700 1.0582 5 6 2.6838 3.2611 0.6982 6 6 3.0857 4.3948 1.6062 7 6 2.6777 3.2632 -0.6985 8 6 3.0713 4.3997 -1.6065 9 7 4.5064 4.3113 -1.9079 10 6 4.9270 5.4061 -2.7924 11 6 6.4237 5.2801 -3.0836 12 1 6.9749 5.2443 -2.1439 13 6 6.6828 3.9972 -3.8761 14 6 6.8875 6.4872 -3.9013 15 6 8.3822 6.4261 -4.0834 16 1 8.9451 5.6084 -3.6581 17 6 9.0314 7.4147 -4.7922 18 7 8.3460 8.4108 -5.3098 19 14 10.8842 7.3395 -5.0174 20 1 11.4158 6.1274 -4.3439 21 1 11.2048 7.2809 -6.4662 22 1 11.5049 8.5498 -4.4216 23 7 2.2614 2.0702 -1.0584 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 4.1514 4.3253 1.8242 30 1 2.8764 5.3451 1.1153 31 1 2.5201 4.3337 2.5359 32 1 2.5010 4.3386 -2.5333 33 1 2.8615 5.3486 -1.1128 34 1 5.0538 4.3008 -1.0605 35 1 4.3695 5.3523 -3.7275 36 1 4.7301 6.3617 -2.3065 37 1 6.3523 3.1373 -3.2935 38 1 6.1316 4.0330 -4.8157 39 1 7.7491 3.9076 -4.0839 40 1 6.4018 6.4733 -4.8771 41 1 6.6226 7.4050 -3.3765 42 1 8.8026 9.1061 -5.8087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877598787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:42 Heat of formation + Delta-G solvation = 82.367141 kcal Electronic energy + Delta-G solvation = -19780.890787 eV Core-core repulsion = 16797.770228 eV Total energy + Delta-G solvation = -2983.120559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.59253 -37.06105 -35.45465 -33.98120 -32.85360 -32.15002 -31.05278 -28.22833 -27.19444 -26.39957 -24.50455 -23.27075 -22.17434 -21.16628 -20.95481 -19.04095 -17.36274 -16.63607 -16.27779 -15.45949 -14.95283 -14.63720 -14.36614 -14.13703 -13.95092 -13.53182 -13.47510 -13.07344 -12.82019 -12.55804 -12.47228 -12.26061 -12.07882 -11.77410 -11.46344 -11.33482 -10.98128 -10.83051 -10.77551 -10.70701 -10.25325 -10.23380 -10.11856 -9.65960 -9.21022 -9.01244 -8.88612 -8.30191 -8.08994 -5.94977 -3.95628 1.76697 2.18085 2.32227 3.34101 3.41691 3.46002 3.92008 4.44474 4.48085 4.50955 4.60841 4.74265 4.77997 4.97715 5.16514 5.17280 5.25836 5.41022 5.44625 5.58421 5.59899 5.69225 5.72015 5.82177 5.93640 6.16677 6.20234 6.22578 6.46025 6.59014 6.67250 6.74136 7.05392 7.23076 7.23840 7.37680 7.65969 7.73685 7.89437 8.05851 8.33241 8.50126 9.11067 9.67620 11.16643 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.038083 B = 0.003011 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.054876 B = 9298.392386 C = 9500.541256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.139 3.861 3 N -0.160 5.160 4 N -0.294 5.294 5 C 0.003 3.997 6 C -0.065 4.065 7 C 0.014 3.986 8 C 0.146 3.854 9 N -0.681 5.681 10 C 0.065 3.935 11 C -0.082 4.082 12 H 0.053 0.947 13 C -0.123 4.123 14 C 0.027 3.973 15 C -0.511 4.511 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 N -0.270 5.270 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.338 0.662 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.053 0.947 40 H 0.017 0.983 41 H 0.013 0.987 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.644 -13.290 12.686 24.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.019 3.981 3 N -0.061 5.061 4 N -0.137 5.137 5 C -0.160 4.160 6 C -0.124 4.124 7 C -0.150 4.150 8 C 0.015 3.985 9 N -0.312 5.312 10 C -0.064 4.064 11 C -0.101 4.101 12 H 0.072 0.928 13 C -0.180 4.180 14 C -0.011 4.011 15 C -0.549 4.549 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 N -0.112 5.112 24 H 0.103 0.897 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.156 0.844 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.031 0.969 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.189 -14.931 12.058 25.108 hybrid contribution 1.279 1.547 0.385 2.044 sum -14.909 -13.383 12.443 23.585 Atomic orbital electron populations 1.22176 0.93368 1.03692 1.03578 1.21909 0.95793 0.74757 1.05632 1.47965 1.45543 1.13202 0.99387 1.73921 1.18414 1.05225 1.16098 1.23083 1.04587 0.94390 0.93941 1.20071 1.02029 0.92920 0.97351 1.22967 1.04590 0.94253 0.93188 1.20063 0.90969 0.90747 0.96679 1.60505 1.01781 1.48573 1.20374 1.22178 0.98188 0.90058 0.95947 1.21195 0.91555 0.98003 0.99306 0.92825 1.21588 1.01108 0.96478 0.98844 1.19131 0.95927 0.91329 0.94688 1.21283 0.92721 1.07915 1.32978 0.92534 1.25024 0.98077 0.95589 0.95926 1.69978 1.35330 1.12048 1.36362 0.86581 0.86049 0.77878 0.77772 1.19768 1.21113 1.21135 1.74025 1.16885 1.04858 1.15403 0.89730 0.91586 0.91409 0.87442 0.87650 0.90283 0.90273 0.90815 0.89556 0.93221 0.84429 0.91324 0.95453 0.94001 0.94138 0.92844 0.96506 0.96853 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.24 37.16 0.38 -0.66 16 2 C 0.14 1.07 7.26 -4.04 -0.03 1.04 16 3 N -0.16 -1.99 3.95 -10.61 -0.04 -2.03 16 4 N -0.29 -3.88 12.05 33.71 0.41 -3.48 16 5 C 0.00 0.04 7.35 -82.25 -0.60 -0.56 16 6 C -0.06 -0.60 10.34 36.01 0.37 -0.23 16 7 C 0.01 0.19 6.87 -82.25 -0.56 -0.38 16 8 C 0.15 1.92 6.14 -4.97 -0.03 1.89 16 9 N -0.68 -10.22 5.94 -115.06 -0.68 -10.90 16 10 C 0.06 1.11 5.07 -3.83 -0.02 1.09 16 11 C -0.08 -1.68 2.48 -90.62 -0.22 -1.90 16 12 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 13 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 14 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 15 C -0.51 -14.37 8.41 -34.44 -0.29 -14.66 16 16 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 19 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 N -0.27 -3.88 12.05 33.71 0.41 -3.47 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.64 7.50 -51.93 -0.39 0.25 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.57 7.50 -51.93 -0.39 0.18 16 34 H 0.34 4.87 8.72 -39.29 -0.34 4.53 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.14 6.95 -51.93 -0.36 0.77 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -32.93 348.85 -7.15 -40.09 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -7.31 Total: -1.44 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -0.90 Total: -14.48 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.82 Total: -46.24 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.93 -7.15 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877598787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.453 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds