Wall clock time and date at job start Mon Mar 30 2020 00:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46903 * 2 1 4 4 N 1.28598 * 124.62305 * 90.02356 * 3 2 1 5 5 C 1.31377 * 108.71819 * 179.97438 * 4 3 2 6 6 C 1.50706 * 127.04465 * 180.02562 * 5 4 3 7 7 C 1.39669 * 105.90179 * 0.26283 * 5 4 3 8 8 C 1.50700 * 127.04934 * 179.73732 * 7 5 4 9 9 N 1.46903 * 109.47320 * 90.00126 * 8 7 5 10 10 C 1.46897 * 111.00197 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47181 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.46976 * 305.00015 * 11 10 9 13 13 C 1.53005 * 109.46865 * 64.99982 * 11 10 9 14 14 C 1.53004 * 109.47005 * 184.99689 * 11 10 9 15 15 C 1.50701 * 109.46635 * 175.00106 * 14 11 10 16 16 H 1.07996 * 120.00281 * 359.97438 * 15 14 11 17 17 C 1.37885 * 119.99823 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99717 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00251 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47156 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47044 * 119.99742 * 19 17 15 22 22 H 1.48493 * 109.47555 * 239.99983 * 19 17 15 23 23 N 1.28600 * 124.61491 * 270.02336 * 3 2 1 24 24 H 1.08990 * 109.47355 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46918 * 300.00445 * 1 2 3 26 26 H 1.09000 * 109.47453 * 59.99777 * 1 2 3 27 27 H 1.08996 * 109.46794 * 240.00409 * 2 1 3 28 28 H 1.08998 * 109.47126 * 119.99529 * 2 1 3 29 29 H 1.08999 * 109.46995 * 90.02666 * 6 5 4 30 30 H 1.08994 * 109.46790 * 210.02353 * 6 5 4 31 31 H 1.08997 * 109.47305 * 330.02793 * 6 5 4 32 32 H 1.09000 * 109.47553 * 210.00271 * 8 7 5 33 33 H 1.09002 * 109.47445 * 329.99878 * 8 7 5 34 34 H 1.00896 * 110.99953 * 303.95460 * 9 8 7 35 35 H 1.09000 * 109.46931 * 299.99987 * 10 9 8 36 36 H 1.08998 * 109.47256 * 59.99523 * 10 9 8 37 37 H 1.09001 * 109.47090 * 299.99673 * 13 11 10 38 38 H 1.08998 * 109.47297 * 60.00229 * 13 11 10 39 39 H 1.09006 * 109.46994 * 179.97438 * 13 11 10 40 40 H 1.09001 * 109.47091 * 294.99377 * 14 11 10 41 41 H 1.08994 * 109.46803 * 55.00201 * 14 11 10 42 42 H 0.96999 * 119.99688 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2623 2.0700 1.0582 5 6 2.6838 3.2611 0.6982 6 6 3.0857 4.3948 1.6062 7 6 2.6777 3.2632 -0.6985 8 6 3.0713 4.3997 -1.6065 9 7 4.5064 4.3113 -1.9079 10 6 4.9270 5.4061 -2.7924 11 6 6.4237 5.2801 -3.0836 12 1 6.9749 5.2443 -2.1439 13 6 6.6828 3.9972 -3.8761 14 6 6.8875 6.4872 -3.9013 15 6 8.3822 6.4261 -4.0834 16 1 8.9451 5.6084 -3.6581 17 6 9.0314 7.4147 -4.7922 18 7 8.3460 8.4108 -5.3098 19 14 10.8842 7.3395 -5.0174 20 1 11.4158 6.1274 -4.3439 21 1 11.2048 7.2809 -6.4662 22 1 11.5049 8.5498 -4.4216 23 7 2.2614 2.0702 -1.0584 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 4.1514 4.3253 1.8242 30 1 2.8764 5.3451 1.1153 31 1 2.5201 4.3337 2.5359 32 1 2.5010 4.3386 -2.5333 33 1 2.8615 5.3486 -1.1128 34 1 5.0538 4.3008 -1.0605 35 1 4.3695 5.3523 -3.7275 36 1 4.7301 6.3617 -2.3065 37 1 6.3523 3.1373 -3.2935 38 1 6.1316 4.0330 -4.8157 39 1 7.7491 3.9076 -4.0839 40 1 6.4018 6.4733 -4.8771 41 1 6.6226 7.4050 -3.3765 42 1 8.8026 9.1061 -5.8087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877598787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:41 Heat of formation + Delta-G solvation = 60.347361 kcal Electronic energy + Delta-G solvation = -19781.845637 eV Core-core repulsion = 16797.770228 eV Total energy + Delta-G solvation = -2984.075409 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.52723 -38.45186 -36.50621 -35.38960 -34.08670 -33.61750 -32.10326 -29.27655 -28.72583 -27.77178 -26.04070 -24.26580 -23.69885 -22.13120 -21.89167 -20.70984 -18.47021 -18.19134 -17.50822 -16.70308 -16.53386 -15.92007 -15.50545 -15.41524 -14.81239 -14.75476 -14.38672 -14.25182 -14.04638 -13.87146 -13.38622 -13.33959 -13.16293 -13.03365 -12.97823 -12.74985 -12.55062 -12.31670 -12.19730 -11.94004 -11.92196 -11.75480 -11.45528 -11.17986 -11.04063 -10.87997 -10.50930 -9.96156 -9.29155 -8.15071 -6.23360 0.81570 1.33844 1.41105 1.41976 1.44462 1.54648 2.44096 3.06038 3.18564 3.40901 3.78405 3.93595 3.94123 4.06354 4.21175 4.21896 4.30430 4.42293 4.56486 4.60843 4.69880 4.71224 4.80956 4.89014 4.94319 4.97496 4.99227 5.06196 5.10213 5.24858 5.32238 5.38470 5.48846 5.52950 5.59310 5.82196 5.84995 5.92957 6.05874 6.34897 6.48389 6.92940 7.37933 7.44593 8.97138 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.038083 B = 0.003011 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.054876 B = 9298.392386 C = 9500.541256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.124 3.876 3 N -0.158 5.158 4 N -0.309 5.309 5 C -0.002 4.002 6 C -0.064 4.064 7 C -0.003 4.003 8 C 0.152 3.848 9 N -0.683 5.683 10 C 0.079 3.921 11 C -0.073 4.073 12 H 0.055 0.945 13 C -0.113 4.113 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.059 0.941 17 C -0.002 4.002 18 N -0.935 5.935 19 Si 0.959 3.041 20 H -0.263 1.263 21 H -0.281 1.281 22 H -0.279 1.279 23 N -0.294 5.294 24 H 0.114 0.886 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.344 0.656 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.060 0.940 38 H 0.034 0.966 39 H 0.036 0.964 40 H -0.010 1.010 41 H -0.009 1.009 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.501 -14.398 13.808 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.007 3.993 3 N -0.060 5.060 4 N -0.151 5.151 5 C -0.165 4.165 6 C -0.123 4.123 7 C -0.166 4.166 8 C 0.021 3.979 9 N -0.315 5.315 10 C -0.050 4.050 11 C -0.092 4.092 12 H 0.073 0.927 13 C -0.170 4.170 14 C -0.005 4.005 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.200 4.200 18 N -0.576 5.576 19 Si 0.784 3.216 20 H -0.187 1.187 21 H -0.207 1.207 22 H -0.205 1.205 23 N -0.136 5.136 24 H 0.133 0.867 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.162 0.838 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.009 0.991 41 H 0.010 0.990 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.055 -16.055 13.197 26.261 hybrid contribution 1.169 1.828 0.055 2.171 sum -14.886 -14.226 13.252 24.486 Atomic orbital electron populations 1.22129 0.92181 1.05277 1.02313 1.22375 0.96795 0.73078 1.07087 1.48464 1.44705 1.14133 0.98733 1.73912 1.18968 1.05691 1.16553 1.23569 1.04000 0.94958 0.93996 1.20199 1.02525 0.92267 0.97316 1.23045 1.05402 0.94298 0.93806 1.20034 0.89401 0.91712 0.96752 1.60390 1.03135 1.47407 1.20572 1.21863 0.95569 0.91101 0.96441 1.21004 0.93960 0.95855 0.98384 0.92653 1.21481 0.99927 0.96825 0.98813 1.19017 0.94904 0.92726 0.93893 1.21674 0.94089 1.07908 1.32790 0.92274 1.25925 1.03156 0.95226 0.95648 1.70103 1.37425 1.12871 1.37192 0.85485 0.79989 0.78289 0.77821 1.18720 1.20671 1.20462 1.73968 1.17575 1.05532 1.16567 0.86703 0.92496 0.92879 0.86392 0.85816 0.89601 0.89068 0.89823 0.90071 0.91148 0.83827 0.91817 0.95010 0.92147 0.94648 0.94470 0.99119 0.99033 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 10.24 71.98 0.74 -1.01 16 2 C 0.12 1.73 7.26 86.38 0.63 2.36 16 3 N -0.16 -3.76 3.95 -187.50 -0.74 -4.50 16 4 N -0.31 -7.77 12.05 -47.25 -0.57 -8.34 16 5 C 0.00 -0.06 7.35 42.98 0.32 0.26 16 6 C -0.06 -1.07 10.34 71.24 0.74 -0.33 16 7 C 0.00 -0.07 6.87 42.97 0.30 0.22 16 8 C 0.15 3.77 6.14 85.56 0.53 4.29 16 9 N -0.68 -19.52 5.94 -517.94 -3.08 -22.60 16 10 C 0.08 2.65 5.07 86.30 0.44 3.08 16 11 C -0.07 -2.98 2.48 -10.79 -0.03 -3.00 16 12 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 13 C -0.11 -4.46 8.89 71.98 0.64 -3.82 16 14 C 0.03 1.68 4.45 29.85 0.13 1.82 16 15 C -0.53 -29.84 8.41 25.60 0.22 -29.62 16 16 H 0.06 3.25 7.06 -2.91 -0.02 3.23 16 17 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 18 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 19 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 N -0.29 -8.20 12.05 -47.25 -0.57 -8.77 16 24 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.12 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.27 7.50 -2.39 -0.02 1.25 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 1.46 7.50 -2.39 -0.02 1.44 16 34 H 0.34 9.28 8.72 -89.70 -0.78 8.50 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 2.14 7.75 -2.39 -0.02 2.13 16 38 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.04 1.55 6.95 -2.38 -0.02 1.54 16 40 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -70.45 348.85 2.65 -67.79 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.20 Total: 11.98 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 5.10 Total: -25.44 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -4.67 Total: -101.10 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -70.45 2.65 -67.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877598787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.139 kcal (2) G-P(sol) polarization free energy of solvation -70.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds