Wall clock time and date at job start Mon Mar 30 2020 00:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.52331 * 2 1 4 4 C 1.47478 * 111.00096 * 78.27041 * 3 2 1 5 5 C 1.53514 * 87.93434 * 138.70424 * 4 3 2 6 6 C 1.47480 * 110.99989 * 174.24106 * 3 2 1 7 7 C 1.53120 * 109.51951 * 239.87528 * 2 1 3 8 8 C 1.53168 * 109.20678 * 297.68692 * 7 2 1 9 9 N 1.46849 * 109.55909 * 300.86296 * 8 7 2 10 10 C 1.46892 * 111.00139 * 185.84206 * 9 8 7 11 11 C 1.52999 * 109.47271 * 45.78989 * 10 9 8 12 12 C 1.53010 * 109.47311 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47209 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99757 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99974 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99737 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00050 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46771 * 60.00084 * 17 15 13 19 19 H 1.48503 * 109.47079 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47347 * 300.00269 * 17 15 13 21 21 C 1.46852 * 111.19566 * 61.74201 * 9 8 7 22 22 C 1.53032 * 109.52306 * 298.25958 * 21 9 8 23 23 H 1.09004 * 109.47294 * 59.99919 * 1 2 3 24 24 H 1.08992 * 109.47448 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47087 * 300.00389 * 1 2 3 26 26 H 1.08998 * 113.47596 * 253.47344 * 4 3 2 27 27 H 1.08999 * 113.47480 * 23.93406 * 4 3 2 28 28 H 1.08998 * 114.16737 * 220.33068 * 5 4 3 29 29 H 1.08994 * 114.17059 * 87.61958 * 5 4 3 30 30 H 1.08998 * 113.47418 * 336.06347 * 6 3 2 31 31 H 1.08997 * 113.47479 * 106.47098 * 6 3 2 32 32 H 1.08993 * 109.50848 * 57.69386 * 7 2 1 33 33 H 1.09007 * 109.49967 * 177.81002 * 7 2 1 34 34 H 1.08998 * 109.44497 * 180.83675 * 8 7 2 35 35 H 1.08995 * 109.44054 * 60.88529 * 8 7 2 36 36 H 1.08999 * 109.47279 * 165.78788 * 10 9 8 37 37 H 1.09000 * 109.47419 * 285.78776 * 10 9 8 38 38 H 1.09001 * 109.47482 * 299.99784 * 11 10 9 39 39 H 1.08998 * 109.47306 * 60.00070 * 11 10 9 40 40 H 1.09001 * 109.46409 * 300.00120 * 12 11 10 41 41 H 1.08998 * 109.47140 * 59.99648 * 12 11 10 42 42 H 0.97007 * 120.00257 * 179.97438 * 16 15 13 43 43 H 1.08994 * 109.45690 * 178.24620 * 21 9 8 44 44 H 1.08994 * 109.44934 * 58.27131 * 21 9 8 45 45 H 1.09007 * 109.50645 * 299.23874 * 22 21 9 46 46 H 1.08996 * 109.50201 * 179.12567 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0209 1.3845 0.0000 4 6 1.9337 1.9762 1.3481 5 6 3.3101 2.6089 1.0989 6 6 3.4887 1.4249 0.1382 7 6 2.0416 -0.7243 -1.2483 8 6 1.5765 -2.1832 -1.2105 9 7 2.0924 -2.8324 0.0015 10 6 1.7823 -4.2682 0.0023 11 6 2.1078 -4.8610 -1.3701 12 6 1.7842 -6.3565 -1.3695 13 6 2.1044 -6.9403 -2.7215 14 1 2.4995 -6.3080 -3.5028 15 6 1.8938 -8.2817 -2.9605 16 7 1.4131 -9.0517 -2.0088 17 14 2.2899 -9.0052 -4.6365 18 1 3.7322 -8.8103 -4.9314 19 1 1.9770 -10.4569 -4.6355 20 1 1.4759 -8.3237 -5.6748 21 6 1.5765 -2.1819 1.2128 22 6 2.0416 -0.7243 1.2482 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.1318 2.7074 1.4503 27 1 1.9345 1.2359 2.1481 28 1 3.9744 2.5868 1.9627 29 1 3.2721 3.5808 0.6071 30 1 3.9044 0.5374 0.6153 31 1 4.0046 1.6878 -0.7853 32 1 1.6457 -0.2375 -2.1395 33 1 3.1310 -0.6903 -1.2679 34 1 1.9512 -2.7064 -2.0902 35 1 0.4871 -2.2166 -1.2047 36 1 2.3791 -4.7684 0.7650 37 1 0.7234 -4.4112 0.2179 38 1 1.5110 -4.3609 -2.1328 39 1 3.1667 -4.7182 -1.5857 40 1 2.3808 -6.8569 -0.6067 41 1 0.7253 -6.4990 -1.1541 42 1 1.2645 -9.9954 -2.1771 43 1 1.9513 -2.7041 2.0931 44 1 0.4871 -2.2154 1.2069 45 1 3.1310 -0.6903 1.2678 46 1 1.6457 -0.2376 2.1394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880472323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:17 Heat of formation + Delta-G solvation = 39.812005 kcal Electronic energy + Delta-G solvation = -21179.493348 eV Core-core repulsion = 18298.067803 eV Total energy + Delta-G solvation = -2881.425545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29203 -38.35467 -34.94333 -33.18433 -31.37758 -30.72844 -28.35511 -27.66732 -26.05223 -25.77973 -23.43721 -23.07336 -21.59689 -20.48144 -19.50563 -17.97493 -17.04908 -16.24873 -15.85582 -15.15063 -15.01157 -14.80815 -14.49278 -14.25327 -13.99883 -13.96843 -13.39250 -12.62211 -12.41937 -12.31902 -12.01553 -11.94459 -11.80251 -11.56389 -11.41075 -11.20034 -11.07783 -10.93666 -10.82047 -10.78762 -10.58861 -10.49620 -10.42444 -10.09639 -9.58611 -9.31224 -9.04025 -8.83379 -8.32807 -7.97762 -5.98309 -4.00541 3.34608 3.38673 3.41424 3.80262 4.14082 4.27409 4.47864 4.54968 4.61704 4.74632 4.86223 5.02838 5.08977 5.24311 5.32227 5.37419 5.40564 5.42175 5.50540 5.56072 5.58558 5.62261 5.68125 5.77116 5.80759 5.85044 5.88367 5.89377 5.98572 6.03502 6.08172 6.22408 6.26425 6.31196 6.41966 6.71861 6.79388 6.95325 7.10494 7.41504 7.43168 7.68990 7.84184 8.01814 8.44999 9.06389 9.63369 11.13125 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.042191 B = 0.003361 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.491081 B = 8329.387123 C = 8538.579892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.074 3.926 3 N -0.463 5.463 4 C -0.016 4.016 5 C -0.148 4.148 6 C -0.009 4.009 7 C -0.099 4.099 8 C 0.049 3.951 9 N -0.538 5.538 10 C 0.057 3.943 11 C -0.112 4.112 12 C 0.023 3.977 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.058 3.942 22 C -0.146 4.146 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.016 0.984 41 H 0.013 0.987 42 H 0.261 0.739 43 H 0.071 0.929 44 H 0.033 0.967 45 H 0.077 0.923 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 21.934 7.964 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.016 4.016 3 N -0.184 5.184 4 C -0.144 4.144 5 C -0.186 4.186 6 C -0.137 4.137 7 C -0.138 4.138 8 C -0.080 4.080 9 N -0.263 5.263 10 C -0.070 4.070 11 C -0.150 4.150 12 C -0.015 4.015 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.071 4.071 22 C -0.184 4.184 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.095 0.905 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.002 22.092 7.408 23.323 hybrid contribution -0.407 -1.143 -0.185 1.227 sum 0.595 20.949 7.223 22.168 Atomic orbital electron populations 1.21836 0.93693 1.01926 1.01944 1.21552 0.95871 0.88686 0.95494 1.69193 1.08405 1.15672 1.25163 1.23994 0.98270 0.99188 0.92973 1.23086 0.97103 0.98709 0.99661 1.23871 0.91475 0.98246 1.00145 1.21607 1.01327 0.94381 0.96443 1.22265 0.97384 0.93846 0.94473 1.62041 1.59439 1.03498 1.01339 1.22271 0.98420 0.85828 1.00510 1.21797 1.00751 0.99117 0.93301 1.19062 0.96688 0.88674 0.97058 1.21215 1.42746 0.93831 0.97993 0.92756 1.25024 0.95312 0.97289 0.96855 1.69957 1.45308 1.05758 1.32593 0.86659 0.78887 0.77943 0.84525 1.20211 1.21310 1.20254 1.22017 0.97263 0.93894 0.93876 1.22374 1.02034 0.95845 0.98168 0.91996 0.91836 0.93070 0.90306 0.90069 0.90928 0.89299 0.90234 0.90074 0.91137 0.91267 0.89186 0.94834 0.91127 0.95429 0.93144 0.92569 0.96593 0.96850 0.92980 0.91038 0.94845 0.90500 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.05 37.16 0.30 -1.19 16 2 C 0.07 0.81 0.47 -131.48 -0.06 0.75 16 3 N -0.46 -4.82 6.14 -228.76 -1.40 -6.23 16 4 C -0.02 -0.13 7.03 -7.55 -0.05 -0.19 16 5 C -0.15 -1.13 8.47 -26.20 -0.22 -1.35 16 6 C -0.01 -0.08 6.41 -7.55 -0.05 -0.13 16 7 C -0.10 -1.23 4.92 -26.58 -0.13 -1.36 16 8 C 0.05 0.70 4.60 -3.76 -0.02 0.68 16 9 N -0.54 -8.15 4.81 -234.60 -1.13 -9.27 16 10 C 0.06 1.00 5.27 -3.83 -0.02 0.98 16 11 C -0.11 -2.34 4.40 -26.73 -0.12 -2.46 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 17 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.06 0.74 5.18 -3.83 -0.02 0.72 16 22 C -0.15 -1.56 3.84 -26.66 -0.10 -1.66 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.74 4.92 -51.93 -0.26 0.48 16 25 H 0.05 0.51 7.83 -51.93 -0.41 0.10 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.66 4.92 -51.93 -0.26 0.41 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.76 5.45 -51.93 -0.28 0.48 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.89 7.31 -51.93 -0.38 0.51 16 34 H 0.09 1.41 5.81 -51.93 -0.30 1.11 16 35 H 0.03 0.49 6.51 -51.93 -0.34 0.15 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.05 1.03 6.21 -51.93 -0.32 0.71 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 44 H 0.03 0.43 6.51 -51.93 -0.34 0.09 16 45 H 0.08 0.85 5.74 -51.93 -0.30 0.56 16 46 H 0.07 0.66 5.84 -51.93 -0.30 0.36 16 LS Contribution 334.00 15.07 5.03 5.03 Total: -1.00 -29.90 334.00 -10.92 -40.82 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -8.09 Total: -2.25 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -1.04 Total: -18.44 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -1.80 Total: -42.03 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.90 -10.92 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880472323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.629 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds