Wall clock time and date at job start Mon Mar 30 2020 00:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.52331 * 2 1 4 4 C 1.47478 * 111.00096 * 78.27041 * 3 2 1 5 5 C 1.53514 * 87.93434 * 138.70424 * 4 3 2 6 6 C 1.47480 * 110.99989 * 174.24106 * 3 2 1 7 7 C 1.53120 * 109.51951 * 239.87528 * 2 1 3 8 8 C 1.53168 * 109.20678 * 297.68692 * 7 2 1 9 9 N 1.46849 * 109.55909 * 300.86296 * 8 7 2 10 10 C 1.46892 * 111.00139 * 185.84206 * 9 8 7 11 11 C 1.52999 * 109.47271 * 45.78989 * 10 9 8 12 12 C 1.53010 * 109.47311 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47209 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99757 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99974 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99737 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00050 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46771 * 60.00084 * 17 15 13 19 19 H 1.48503 * 109.47079 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47347 * 300.00269 * 17 15 13 21 21 C 1.46852 * 111.19566 * 61.74201 * 9 8 7 22 22 C 1.53032 * 109.52306 * 298.25958 * 21 9 8 23 23 H 1.09004 * 109.47294 * 59.99919 * 1 2 3 24 24 H 1.08992 * 109.47448 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47087 * 300.00389 * 1 2 3 26 26 H 1.08998 * 113.47596 * 253.47344 * 4 3 2 27 27 H 1.08999 * 113.47480 * 23.93406 * 4 3 2 28 28 H 1.08998 * 114.16737 * 220.33068 * 5 4 3 29 29 H 1.08994 * 114.17059 * 87.61958 * 5 4 3 30 30 H 1.08998 * 113.47418 * 336.06347 * 6 3 2 31 31 H 1.08997 * 113.47479 * 106.47098 * 6 3 2 32 32 H 1.08993 * 109.50848 * 57.69386 * 7 2 1 33 33 H 1.09007 * 109.49967 * 177.81002 * 7 2 1 34 34 H 1.08998 * 109.44497 * 180.83675 * 8 7 2 35 35 H 1.08995 * 109.44054 * 60.88529 * 8 7 2 36 36 H 1.08999 * 109.47279 * 165.78788 * 10 9 8 37 37 H 1.09000 * 109.47419 * 285.78776 * 10 9 8 38 38 H 1.09001 * 109.47482 * 299.99784 * 11 10 9 39 39 H 1.08998 * 109.47306 * 60.00070 * 11 10 9 40 40 H 1.09001 * 109.46409 * 300.00120 * 12 11 10 41 41 H 1.08998 * 109.47140 * 59.99648 * 12 11 10 42 42 H 0.97007 * 120.00257 * 179.97438 * 16 15 13 43 43 H 1.08994 * 109.45690 * 178.24620 * 21 9 8 44 44 H 1.08994 * 109.44934 * 58.27131 * 21 9 8 45 45 H 1.09007 * 109.50645 * 299.23874 * 22 21 9 46 46 H 1.08996 * 109.50201 * 179.12567 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0209 1.3845 0.0000 4 6 1.9337 1.9762 1.3481 5 6 3.3101 2.6089 1.0989 6 6 3.4887 1.4249 0.1382 7 6 2.0416 -0.7243 -1.2483 8 6 1.5765 -2.1832 -1.2105 9 7 2.0924 -2.8324 0.0015 10 6 1.7823 -4.2682 0.0023 11 6 2.1078 -4.8610 -1.3701 12 6 1.7842 -6.3565 -1.3695 13 6 2.1044 -6.9403 -2.7215 14 1 2.4995 -6.3080 -3.5028 15 6 1.8938 -8.2817 -2.9605 16 7 1.4131 -9.0517 -2.0088 17 14 2.2899 -9.0052 -4.6365 18 1 3.7322 -8.8103 -4.9314 19 1 1.9770 -10.4569 -4.6355 20 1 1.4759 -8.3237 -5.6748 21 6 1.5765 -2.1819 1.2128 22 6 2.0416 -0.7243 1.2482 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.1318 2.7074 1.4503 27 1 1.9345 1.2359 2.1481 28 1 3.9744 2.5868 1.9627 29 1 3.2721 3.5808 0.6071 30 1 3.9044 0.5374 0.6153 31 1 4.0046 1.6878 -0.7853 32 1 1.6457 -0.2375 -2.1395 33 1 3.1310 -0.6903 -1.2679 34 1 1.9512 -2.7064 -2.0902 35 1 0.4871 -2.2166 -1.2047 36 1 2.3791 -4.7684 0.7650 37 1 0.7234 -4.4112 0.2179 38 1 1.5110 -4.3609 -2.1328 39 1 3.1667 -4.7182 -1.5857 40 1 2.3808 -6.8569 -0.6067 41 1 0.7253 -6.4990 -1.1541 42 1 1.2645 -9.9954 -2.1771 43 1 1.9513 -2.7041 2.0931 44 1 0.4871 -2.2154 1.2069 45 1 3.1310 -0.6903 1.2678 46 1 1.6457 -0.2376 2.1394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880472323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:16 Heat of formation + Delta-G solvation = 19.928724 kcal Electronic energy + Delta-G solvation = -21180.355552 eV Core-core repulsion = 18298.067803 eV Total energy + Delta-G solvation = -2882.287749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.12123 -39.43424 -36.39595 -34.95011 -32.97276 -31.91020 -29.64137 -28.44202 -27.57409 -26.67396 -24.78609 -24.36571 -22.95483 -21.61769 -20.79891 -18.87153 -18.53671 -17.83221 -16.68353 -16.49516 -16.28515 -16.09314 -15.88509 -15.49296 -15.11908 -15.01315 -14.41758 -14.26883 -13.73630 -13.57802 -13.33118 -13.03903 -12.99775 -12.75903 -12.66417 -12.60775 -12.44801 -12.35293 -12.04334 -11.96944 -11.72618 -11.60773 -11.48990 -11.44052 -11.30202 -11.14612 -10.90046 -10.55394 -9.59825 -9.21626 -8.21174 -6.32481 1.39105 1.42398 1.50330 2.40065 2.90637 3.08804 3.11853 3.58194 3.70586 3.75804 3.90199 4.04315 4.11544 4.19564 4.26462 4.28839 4.36881 4.43375 4.47582 4.62996 4.67046 4.69551 4.70382 4.74597 4.87302 4.90673 4.94966 4.95997 5.00512 5.02240 5.05950 5.11140 5.12239 5.16635 5.26243 5.27543 5.42337 5.49135 5.55131 5.72073 5.83516 6.08114 6.18575 6.21542 6.26952 6.84040 7.36788 8.90635 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.042191 B = 0.003361 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.491081 B = 8329.387123 C = 8538.579892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.077 3.923 3 N -0.477 5.477 4 C -0.016 4.016 5 C -0.136 4.136 6 C -0.013 4.013 7 C -0.092 4.092 8 C 0.050 3.950 9 N -0.541 5.541 10 C 0.068 3.932 11 C -0.095 4.095 12 C 0.027 3.973 13 C -0.545 4.545 14 H 0.059 0.941 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.965 3.035 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.056 3.944 22 C -0.137 4.137 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.023 0.977 38 H 0.053 0.947 39 H 0.052 0.948 40 H -0.008 1.008 41 H -0.011 1.011 42 H 0.264 0.736 43 H 0.076 0.924 44 H 0.034 0.966 45 H 0.076 0.924 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 23.510 7.946 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.013 4.013 3 N -0.199 5.199 4 C -0.144 4.144 5 C -0.174 4.174 6 C -0.142 4.142 7 C -0.131 4.131 8 C -0.078 4.078 9 N -0.265 5.265 10 C -0.060 4.060 11 C -0.133 4.133 12 C -0.010 4.010 13 C -0.583 4.583 14 H 0.077 0.923 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.789 3.211 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.072 4.072 22 C -0.176 4.176 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.010 0.990 41 H 0.008 0.992 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.094 0.906 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.443 23.696 7.395 24.865 hybrid contribution -0.555 -1.609 -0.153 1.708 sum 0.888 22.087 7.242 23.261 Atomic orbital electron populations 1.21790 0.93591 1.01341 1.02326 1.21466 0.95878 0.89227 0.94701 1.69200 1.09145 1.14896 1.26653 1.24058 0.99019 0.99320 0.92028 1.23056 0.96663 0.98074 0.99614 1.23910 0.90755 0.98998 1.00509 1.21514 1.00971 0.93041 0.97528 1.22232 0.97159 0.94962 0.93490 1.62030 1.59797 1.02020 1.02702 1.22009 0.98042 0.87702 0.98215 1.21540 1.00429 0.95749 0.95586 1.18956 0.94596 0.91960 0.95533 1.21662 1.42973 0.94561 0.99067 0.92288 1.25990 0.94898 0.97755 1.01192 1.70091 1.46166 1.06183 1.34953 0.85500 0.79145 0.77132 0.79287 1.19132 1.20722 1.19144 1.22122 0.97357 0.95072 0.92693 1.22329 1.02022 0.94318 0.98906 0.92389 0.92840 0.91935 0.89873 0.89454 0.89401 0.88958 0.90492 0.90484 0.91054 0.91718 0.90907 0.95082 0.91302 0.95865 0.92803 0.92908 0.98983 0.99244 0.92727 0.90512 0.94768 0.90561 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 8.05 71.98 0.58 -2.11 16 2 C 0.08 1.58 0.47 3.60 0.00 1.58 16 3 N -0.48 -8.99 6.14 -877.67 -5.39 -14.38 16 4 C -0.02 -0.23 7.03 83.57 0.59 0.36 16 5 C -0.14 -1.72 8.47 30.94 0.26 -1.45 16 6 C -0.01 -0.22 6.41 83.57 0.54 0.32 16 7 C -0.09 -2.21 4.92 30.69 0.15 -2.06 16 8 C 0.05 1.42 4.60 86.37 0.40 1.82 16 9 N -0.54 -16.07 4.81 -896.14 -4.31 -20.38 16 10 C 0.07 2.42 5.27 86.30 0.46 2.88 16 11 C -0.10 -4.06 4.40 30.60 0.13 -3.93 16 12 C 0.03 1.47 4.97 29.85 0.15 1.62 16 13 C -0.54 -31.74 9.11 25.60 0.23 -31.51 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 16 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 17 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 C 0.06 1.34 5.18 86.32 0.45 1.79 16 22 C -0.14 -2.65 3.84 30.64 0.12 -2.53 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.05 1.18 4.92 -2.39 -0.01 1.17 16 25 H 0.06 1.11 7.83 -2.39 -0.02 1.09 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 1.15 4.92 -2.39 -0.01 1.13 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.33 5.45 -2.39 -0.01 1.32 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.61 7.31 -2.38 -0.02 1.59 16 34 H 0.07 2.31 5.81 -2.39 -0.01 2.29 16 35 H 0.03 0.90 6.51 -2.39 -0.02 0.88 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.02 0.84 8.08 -2.39 -0.02 0.82 16 38 H 0.05 2.24 6.21 -2.39 -0.01 2.23 16 39 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 40 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 42 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 43 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 44 H 0.03 0.83 6.51 -2.39 -0.02 0.82 16 45 H 0.08 1.52 5.74 -2.38 -0.01 1.51 16 46 H 0.09 1.43 5.84 -2.39 -0.01 1.41 16 Total: -1.00 -63.98 334.00 -1.93 -65.91 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.93 Total: 12.19 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 4.51 Total: -32.82 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -9.41 Total: -92.19 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.98 -1.93 -65.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880472323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.841 kcal (2) G-P(sol) polarization free energy of solvation -63.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds