Wall clock time and date at job start Mon Mar 30 2020 00:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46631 * 2 1 4 4 C 1.53000 * 109.47281 * 120.00459 * 2 1 3 5 5 N 1.46497 * 109.47224 * 295.00160 * 4 2 1 6 6 C 1.35313 * 125.86667 * 125.29209 * 5 4 2 7 7 C 1.35349 * 106.17218 * 180.18574 * 6 5 4 8 8 C 1.50697 * 126.75364 * 179.85517 * 7 6 5 9 9 N 1.46499 * 109.47276 * 94.71254 * 8 7 6 10 10 C 1.36935 * 119.99938 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00518 * 359.72965 * 10 9 8 12 12 C 1.38817 * 119.99990 * 179.97438 * 10 9 8 13 13 N 1.31617 * 119.99869 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99909 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47361 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46860 * 120.00310 * 14 12 10 17 17 H 1.48500 * 109.47264 * 240.00123 * 14 12 10 18 18 N 1.33776 * 106.49865 * 359.59278 * 7 6 5 19 19 N 1.28634 * 108.88055 * 0.26390 * 18 7 6 20 20 C 1.53002 * 109.46925 * 240.00870 * 2 1 3 21 21 C 1.53004 * 109.46871 * 299.99630 * 20 2 1 22 22 C 1.53000 * 109.47476 * 59.99709 * 20 2 1 23 23 C 1.53004 * 109.46925 * 180.02562 * 20 2 1 24 24 H 1.09002 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47081 * 299.98958 * 1 2 3 26 26 H 1.08998 * 109.47202 * 59.99418 * 1 2 3 27 27 H 1.08997 * 109.46709 * 174.99881 * 4 2 1 28 28 H 1.09004 * 109.46796 * 55.00397 * 4 2 1 29 29 H 1.08001 * 126.91913 * 0.04070 * 6 5 4 30 30 H 1.09004 * 109.47205 * 334.71228 * 8 7 6 31 31 H 1.09005 * 109.47240 * 214.71438 * 8 7 6 32 32 H 0.96999 * 119.99984 * 0.02562 * 9 8 7 33 33 H 0.96996 * 119.99743 * 179.97438 * 13 12 10 34 34 H 1.08995 * 109.47234 * 60.00404 * 21 20 2 35 35 H 1.09001 * 109.46992 * 180.02562 * 21 20 2 36 36 H 1.08998 * 109.47274 * 300.00300 * 21 20 2 37 37 H 1.09002 * 109.46919 * 59.99895 * 22 20 2 38 38 H 1.08999 * 109.47263 * 180.02562 * 22 20 2 39 39 H 1.08998 * 109.46705 * 300.00161 * 22 20 2 40 40 H 1.08998 * 109.47202 * 59.99712 * 23 20 2 41 41 H 1.08999 * 109.46902 * 179.97438 * 23 20 2 42 42 H 1.09000 * 109.46498 * 299.99664 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 0.0351 2.4424 6 6 0.9613 -0.4508 3.4993 7 6 0.8208 0.5807 4.3643 8 6 0.1188 0.5504 5.6974 9 7 1.0964 0.2964 6.7585 10 6 0.6873 0.2246 8.0634 11 1 -0.3552 0.3595 8.3108 12 6 1.6136 -0.0166 9.0688 13 7 2.8850 -0.1758 8.7679 14 14 1.0557 -0.1138 10.8489 15 1 -0.4123 0.0986 10.9200 16 1 1.3890 -1.4521 11.3997 17 1 1.7469 0.9340 11.6423 18 7 1.4329 1.6310 3.8057 19 7 1.9152 1.2748 2.6676 20 6 2.0400 -0.7211 -1.2494 21 6 1.5300 -2.1636 -1.2495 22 6 1.5300 0.0003 -2.4985 23 6 3.5700 -0.7216 -1.2491 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5136 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.1264 -0.7995 1.2054 28 1 1.6055 -1.7199 1.2949 29 1 0.5934 -1.4583 3.6261 30 1 -0.6299 -0.2419 5.6959 31 1 -0.3678 1.5097 5.8737 32 1 2.0334 0.1791 6.5368 33 1 3.5322 -0.3439 9.4705 34 1 0.4401 -2.1637 -1.2495 35 1 1.8937 -2.6775 -2.1393 36 1 1.8933 -2.6775 -0.3596 37 1 1.8933 1.0279 -2.4984 38 1 1.8929 -0.5137 -3.3886 39 1 0.4400 0.0002 -2.4984 40 1 3.9330 -1.2358 -0.3592 41 1 3.9333 -1.2357 -2.1389 42 1 3.9336 0.3059 -1.2487 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881326951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:16 Heat of formation + Delta-G solvation = 92.386739 kcal Electronic energy + Delta-G solvation = -20303.984186 eV Core-core repulsion = 17321.298109 eV Total energy + Delta-G solvation = -2982.686077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.88704 -39.21926 -35.11581 -34.07987 -31.79169 -31.08589 -29.81457 -28.61694 -27.73097 -26.38122 -25.68416 -23.44182 -22.74047 -21.42799 -20.40870 -18.47915 -17.42705 -16.95815 -16.38293 -15.31036 -14.88023 -14.65896 -14.47336 -14.36095 -14.06519 -13.76992 -13.46382 -13.12103 -12.60849 -12.49512 -12.34859 -12.31837 -12.22998 -11.95012 -11.65748 -11.56975 -11.20859 -10.91493 -10.87626 -10.80843 -10.79083 -10.71660 -10.32462 -10.02241 -9.77594 -9.58992 -8.84879 -8.74211 -6.87357 -5.70424 -2.99723 1.95648 2.56613 3.00924 3.47813 3.53229 3.55762 4.15823 4.28644 4.33485 4.53635 4.66174 4.73302 4.84509 4.91565 5.05462 5.13874 5.24199 5.28011 5.33582 5.38751 5.44398 5.52626 5.55109 5.56437 5.57270 5.67690 5.69866 5.76207 5.76461 5.92102 5.97020 6.03251 6.13677 6.22951 6.49337 6.73228 6.83219 6.91686 7.75036 8.46975 8.95612 9.58721 10.15267 10.51313 11.52517 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.045046 B = 0.003307 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.440832 B = 8465.333038 C = 8593.654880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 H 0.090 0.910 4 C 0.117 3.883 5 N -0.294 5.294 6 C -0.046 4.046 7 C -0.007 4.007 8 C 0.233 3.767 9 N -0.726 5.726 10 C -0.238 4.238 11 H 0.074 0.926 12 C -0.014 4.014 13 N -0.932 5.932 14 Si 0.909 3.091 15 H -0.279 1.279 16 H -0.292 1.292 17 H -0.292 1.292 18 N -0.257 5.257 19 N -0.096 5.096 20 C -0.060 4.060 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.149 4.149 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.186 0.814 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.385 0.615 33 H 0.254 0.746 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.150 -5.069 -24.644 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 H 0.108 0.892 4 C -0.004 4.004 5 N -0.088 5.088 6 C -0.197 4.197 7 C -0.145 4.145 8 C 0.104 3.896 9 N -0.371 5.371 10 C -0.369 4.369 11 H 0.091 0.909 12 C -0.210 4.210 13 N -0.581 5.581 14 Si 0.740 3.260 15 H -0.205 1.205 16 H -0.219 1.219 17 H -0.219 1.219 18 N -0.125 5.125 19 N -0.075 5.075 20 C -0.061 4.061 21 C -0.208 4.208 22 C -0.199 4.199 23 C -0.207 4.207 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.203 0.797 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.219 0.781 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.585 -3.798 -25.059 25.476 hybrid contribution -0.267 -1.243 1.268 1.795 sum -2.852 -5.040 -23.791 24.486 Atomic orbital electron populations 1.21952 0.94391 1.02189 1.02422 1.21478 0.96787 1.00806 0.92134 0.89168 1.22306 1.02200 0.94633 0.81280 1.47257 1.36789 1.09235 1.15484 1.23384 1.04206 1.02200 0.89878 1.22440 1.03072 0.89546 0.99488 1.18929 0.91029 0.98853 0.80784 1.42324 1.06408 1.86552 1.01804 1.19287 0.93549 1.40916 0.83142 0.90851 1.24762 0.95384 1.02849 0.98039 1.69695 1.00715 1.55924 1.31739 0.86088 0.77646 0.77131 0.85150 1.20469 1.21945 1.21874 1.75094 1.10755 1.25753 1.00853 1.78194 1.20789 0.94951 1.13539 1.20506 0.95708 0.95511 0.94379 1.22042 1.01546 0.95152 1.02015 1.21909 1.01324 1.00312 0.96401 1.22001 0.94274 1.02389 1.01990 0.92127 0.92654 0.91747 0.88396 0.87907 0.79713 0.94582 0.94429 0.78113 0.93600 0.91998 0.92386 0.92439 0.92437 0.92508 0.92188 0.92333 0.92333 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.38 37.16 0.31 -1.00 16 2 C -0.09 -0.79 1.79 -90.62 -0.16 -0.95 16 3 H 0.09 0.94 8.00 -51.93 -0.42 0.52 16 4 C 0.12 1.13 5.12 -4.04 -0.02 1.11 16 5 N -0.29 -4.25 2.89 -61.26 -0.18 -4.43 16 6 C -0.05 -0.72 11.50 -17.05 -0.20 -0.92 16 7 C -0.01 -0.14 6.61 -82.78 -0.55 -0.69 16 8 C 0.23 5.06 6.82 -5.20 -0.04 5.02 16 9 N -0.73 -19.47 5.59 -61.08 -0.34 -19.82 16 10 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 11 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 12 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 13 N -0.93 -29.15 13.06 55.49 0.72 -28.43 16 14 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 17 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 18 N -0.26 -5.42 12.41 33.29 0.41 -5.00 16 19 N -0.10 -1.73 12.82 60.35 0.77 -0.96 16 20 C -0.06 -0.39 0.57 -154.50 -0.09 -0.48 16 21 C -0.15 -0.85 7.77 37.16 0.29 -0.56 16 22 C -0.14 -0.87 8.12 37.16 0.30 -0.57 16 23 C -0.15 -0.97 8.13 37.16 0.30 -0.66 16 24 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 25 H 0.05 0.62 7.75 -51.93 -0.40 0.22 16 26 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 27 H 0.10 0.89 6.17 -51.93 -0.32 0.57 16 28 H 0.10 0.76 6.63 -51.93 -0.34 0.41 16 29 H 0.19 2.28 8.06 -52.49 -0.42 1.86 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.39 11.15 7.66 -40.82 -0.31 10.83 16 33 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.31 6.54 -51.93 -0.34 -0.03 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 40 H 0.06 0.38 6.32 -51.93 -0.33 0.05 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -33.88 333.95 -5.42 -39.30 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.73 Total: 3.74 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -0.09 Total: -7.22 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 1.39 Total: -58.63 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.88 -5.42 -39.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881326951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.684 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds