Wall clock time and date at job start Mon Mar 30 2020 00:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46631 * 2 1 4 4 C 1.53000 * 109.47281 * 120.00459 * 2 1 3 5 5 N 1.46497 * 109.47224 * 295.00160 * 4 2 1 6 6 C 1.35313 * 125.86667 * 125.29209 * 5 4 2 7 7 C 1.35349 * 106.17218 * 180.18574 * 6 5 4 8 8 C 1.50697 * 126.75364 * 179.85517 * 7 6 5 9 9 N 1.46499 * 109.47276 * 94.71254 * 8 7 6 10 10 C 1.36935 * 119.99938 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00518 * 359.72965 * 10 9 8 12 12 C 1.38817 * 119.99990 * 179.97438 * 10 9 8 13 13 N 1.31617 * 119.99869 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99909 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47361 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46860 * 120.00310 * 14 12 10 17 17 H 1.48500 * 109.47264 * 240.00123 * 14 12 10 18 18 N 1.33776 * 106.49865 * 359.59278 * 7 6 5 19 19 N 1.28634 * 108.88055 * 0.26390 * 18 7 6 20 20 C 1.53002 * 109.46925 * 240.00870 * 2 1 3 21 21 C 1.53004 * 109.46871 * 299.99630 * 20 2 1 22 22 C 1.53000 * 109.47476 * 59.99709 * 20 2 1 23 23 C 1.53004 * 109.46925 * 180.02562 * 20 2 1 24 24 H 1.09002 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47081 * 299.98958 * 1 2 3 26 26 H 1.08998 * 109.47202 * 59.99418 * 1 2 3 27 27 H 1.08997 * 109.46709 * 174.99881 * 4 2 1 28 28 H 1.09004 * 109.46796 * 55.00397 * 4 2 1 29 29 H 1.08001 * 126.91913 * 0.04070 * 6 5 4 30 30 H 1.09004 * 109.47205 * 334.71228 * 8 7 6 31 31 H 1.09005 * 109.47240 * 214.71438 * 8 7 6 32 32 H 0.96999 * 119.99984 * 0.02562 * 9 8 7 33 33 H 0.96996 * 119.99743 * 179.97438 * 13 12 10 34 34 H 1.08995 * 109.47234 * 60.00404 * 21 20 2 35 35 H 1.09001 * 109.46992 * 180.02562 * 21 20 2 36 36 H 1.08998 * 109.47274 * 300.00300 * 21 20 2 37 37 H 1.09002 * 109.46919 * 59.99895 * 22 20 2 38 38 H 1.08999 * 109.47263 * 180.02562 * 22 20 2 39 39 H 1.08998 * 109.46705 * 300.00161 * 22 20 2 40 40 H 1.08998 * 109.47202 * 59.99712 * 23 20 2 41 41 H 1.08999 * 109.46902 * 179.97438 * 23 20 2 42 42 H 1.09000 * 109.46498 * 299.99664 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 0.0351 2.4424 6 6 0.9613 -0.4508 3.4993 7 6 0.8208 0.5807 4.3643 8 6 0.1188 0.5504 5.6974 9 7 1.0964 0.2964 6.7585 10 6 0.6873 0.2246 8.0634 11 1 -0.3552 0.3595 8.3108 12 6 1.6136 -0.0166 9.0688 13 7 2.8850 -0.1758 8.7679 14 14 1.0557 -0.1138 10.8489 15 1 -0.4123 0.0986 10.9200 16 1 1.3890 -1.4521 11.3997 17 1 1.7469 0.9340 11.6423 18 7 1.4329 1.6310 3.8057 19 7 1.9152 1.2748 2.6676 20 6 2.0400 -0.7211 -1.2494 21 6 1.5300 -2.1636 -1.2495 22 6 1.5300 0.0003 -2.4985 23 6 3.5700 -0.7216 -1.2491 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5136 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.1264 -0.7995 1.2054 28 1 1.6055 -1.7199 1.2949 29 1 0.5934 -1.4583 3.6261 30 1 -0.6299 -0.2419 5.6959 31 1 -0.3678 1.5097 5.8737 32 1 2.0334 0.1791 6.5368 33 1 3.5322 -0.3439 9.4705 34 1 0.4401 -2.1637 -1.2495 35 1 1.8937 -2.6775 -2.1393 36 1 1.8933 -2.6775 -0.3596 37 1 1.8933 1.0279 -2.4984 38 1 1.8929 -0.5137 -3.3886 39 1 0.4400 0.0002 -2.4984 40 1 3.9330 -1.2358 -0.3592 41 1 3.9333 -1.2357 -2.1389 42 1 3.9336 0.3059 -1.2487 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881326951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:16 Heat of formation + Delta-G solvation = 70.026227 kcal Electronic energy + Delta-G solvation = -20304.953811 eV Core-core repulsion = 17321.298109 eV Total energy + Delta-G solvation = -2983.655701 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.20845 -39.86983 -36.85619 -35.39570 -33.63820 -31.94161 -31.53126 -29.34929 -28.18239 -27.59827 -27.02765 -24.79488 -24.21292 -22.70985 -21.69697 -19.38251 -19.05493 -18.26634 -17.49033 -16.64584 -16.04549 -15.88866 -15.67835 -15.46327 -15.02585 -14.89859 -14.69217 -14.39014 -14.15866 -13.60241 -13.18326 -13.08718 -12.94665 -12.80535 -12.79240 -12.73031 -12.55927 -12.29302 -12.12896 -12.02945 -11.86723 -11.79097 -11.54010 -11.39067 -11.33018 -10.96943 -10.79257 -10.16130 -9.01706 -7.92987 -5.23502 0.68830 1.46364 1.50756 1.51890 1.54910 1.62568 2.60008 3.35442 3.39868 3.53168 3.65710 3.74795 3.93725 4.06674 4.10592 4.21932 4.27609 4.29301 4.43232 4.48472 4.56165 4.69198 4.82106 4.82178 4.86318 4.88417 4.98029 5.06851 5.10355 5.10826 5.16202 5.17682 5.21022 5.25162 5.39653 5.51250 5.51502 5.58175 5.76275 6.26846 7.33433 7.57522 8.04772 8.31099 9.31304 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.045046 B = 0.003307 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.440832 B = 8465.333038 C = 8593.654880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.066 0.934 4 C 0.105 3.895 5 N -0.276 5.276 6 C -0.023 4.023 7 C -0.040 4.040 8 C 0.236 3.764 9 N -0.740 5.740 10 C -0.243 4.243 11 H 0.085 0.915 12 C -0.079 4.079 13 N -0.973 5.973 14 Si 0.980 3.020 15 H -0.261 1.261 16 H -0.291 1.291 17 H -0.297 1.297 18 N -0.303 5.303 19 N -0.111 5.111 20 C -0.053 4.053 21 C -0.151 4.151 22 C -0.143 4.143 23 C -0.151 4.151 24 H 0.079 0.921 25 H 0.025 0.975 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.136 0.864 29 H 0.225 0.775 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.370 0.630 33 H 0.250 0.750 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.206 -7.021 -25.775 27.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.084 0.916 4 C -0.014 4.014 5 N -0.070 5.070 6 C -0.175 4.175 7 C -0.179 4.179 8 C 0.109 3.891 9 N -0.382 5.382 10 C -0.374 4.374 11 H 0.103 0.897 12 C -0.271 4.271 13 N -0.624 5.624 14 Si 0.808 3.192 15 H -0.185 1.185 16 H -0.218 1.218 17 H -0.224 1.224 18 N -0.170 5.170 19 N -0.090 5.090 20 C -0.053 4.053 21 C -0.208 4.208 22 C -0.200 4.200 23 C -0.208 4.208 24 H 0.098 0.902 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.125 0.875 28 H 0.154 0.846 29 H 0.242 0.758 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.201 0.799 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.676 -5.736 -26.241 27.111 hybrid contribution 0.051 -0.646 1.448 1.587 sum -3.625 -6.382 -24.793 25.857 Atomic orbital electron populations 1.21932 0.94275 1.03053 1.01316 1.21415 0.96754 0.99706 0.92685 0.91586 1.22851 1.03208 0.95603 0.79773 1.47621 1.34893 1.08329 1.16174 1.23825 1.02332 1.02663 0.88698 1.22279 1.04967 0.90913 0.99720 1.18950 0.90581 0.98867 0.80739 1.42535 1.06550 1.86597 1.02540 1.19749 0.94054 1.39375 0.84223 0.89745 1.25660 0.95481 1.03423 1.02504 1.69867 1.01968 1.57773 1.32828 0.84979 0.78036 0.76637 0.79514 1.18521 1.21769 1.22436 1.75023 1.12305 1.27444 1.02241 1.78095 1.21300 0.96755 1.12840 1.20450 0.95610 0.96083 0.93198 1.22055 1.01813 0.94110 1.02779 1.21918 1.01499 0.99926 0.96650 1.22023 0.94294 1.01903 1.02606 0.90212 0.95589 0.91048 0.87501 0.84583 0.75821 0.91978 0.95526 0.79864 0.94078 0.91594 0.91587 0.91812 0.93334 0.91478 0.91915 0.92178 0.91260 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.38 71.98 0.60 -1.71 16 2 C -0.09 -1.34 1.79 -10.79 -0.02 -1.36 16 3 H 0.07 1.37 8.00 -2.39 -0.02 1.35 16 4 C 0.10 1.77 5.12 86.38 0.44 2.21 16 5 N -0.28 -7.64 2.89 -347.74 -1.01 -8.64 16 6 C -0.02 -0.68 11.50 83.49 0.96 0.28 16 7 C -0.04 -1.57 6.61 41.59 0.28 -1.29 16 8 C 0.24 10.21 6.82 85.63 0.58 10.80 16 9 N -0.74 -39.95 5.59 -347.17 -1.94 -41.89 16 10 C -0.24 -13.90 9.99 84.04 0.84 -13.06 16 11 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 12 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 13 N -0.97 -61.82 13.06 21.65 0.28 -61.54 16 14 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 15 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 17 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 18 N -0.30 -13.05 12.41 -48.60 -0.60 -13.66 16 19 N -0.11 -4.04 12.82 37.02 0.47 -3.57 16 20 C -0.05 -0.57 0.57 -52.18 -0.03 -0.60 16 21 C -0.15 -1.18 7.77 71.98 0.56 -0.63 16 22 C -0.14 -1.49 8.12 71.98 0.58 -0.90 16 23 C -0.15 -1.68 8.13 71.98 0.59 -1.10 16 24 H 0.08 0.93 6.43 -2.39 -0.02 0.91 16 25 H 0.02 0.55 7.75 -2.39 -0.02 0.53 16 26 H 0.07 1.00 6.43 -2.39 -0.02 0.98 16 27 H 0.11 1.70 6.17 -2.39 -0.01 1.69 16 28 H 0.14 1.44 6.63 -2.39 -0.02 1.43 16 29 H 0.23 4.64 8.06 -2.91 -0.02 4.62 16 30 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.37 21.88 7.66 -92.71 -0.71 21.17 16 33 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.07 0.49 6.43 -2.39 -0.02 0.47 16 35 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.06 0.43 6.54 -2.39 -0.02 0.42 16 37 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 0.62 6.43 -2.39 -0.02 0.61 16 40 H 0.06 0.64 6.32 -2.39 -0.02 0.63 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -74.62 333.95 5.38 -69.23 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.30 Total: 22.64 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 5.85 Total: -11.54 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -2.79 Total: -129.30 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -74.62 5.38 -69.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881326951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.259 kcal (2) G-P(sol) polarization free energy of solvation -74.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds