Wall clock time and date at job start Mon Mar 30 2020 00:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47405 * 2 1 4 4 C 1.52998 * 109.46955 * 239.99745 * 2 1 3 5 5 N 1.46501 * 109.46957 * 65.00333 * 4 2 1 6 6 C 1.35320 * 125.86925 * 124.99649 * 5 4 2 7 7 C 1.35339 * 106.17716 * 180.02562 * 6 5 4 8 8 C 1.50697 * 126.75399 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.47276 * 94.99868 * 8 7 6 10 10 C 1.36935 * 119.99938 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00518 * 359.72965 * 10 9 8 12 12 C 1.38817 * 119.99990 * 179.97438 * 10 9 8 13 13 N 1.31614 * 119.99892 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99858 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47174 * 89.99644 * 14 12 10 16 16 H 1.48494 * 109.46800 * 209.99692 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99394 * 14 12 10 18 18 N 1.33775 * 106.49993 * 0.26185 * 7 6 5 19 19 N 1.28641 * 108.88249 * 359.56393 * 18 7 6 20 20 C 1.52996 * 109.46844 * 120.00231 * 2 1 3 21 21 C 1.52997 * 109.47196 * 180.02562 * 20 2 1 22 22 C 1.53005 * 109.47172 * 299.99666 * 20 2 1 23 23 C 1.53004 * 109.47627 * 59.99884 * 20 2 1 24 24 H 1.08996 * 109.47405 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47359 * 300.00156 * 1 2 3 26 26 H 1.09008 * 109.47009 * 59.99885 * 1 2 3 27 27 H 1.09000 * 109.47388 * 305.00381 * 4 2 1 28 28 H 1.09001 * 109.46951 * 184.99561 * 4 2 1 29 29 H 1.08003 * 126.90990 * 359.97438 * 6 5 4 30 30 H 1.09004 * 109.47205 * 334.99843 * 8 7 6 31 31 H 1.09005 * 109.47240 * 215.00052 * 8 7 6 32 32 H 0.96999 * 119.99984 * 0.02562 * 9 8 7 33 33 H 0.97005 * 119.99715 * 180.02562 * 13 12 10 34 34 H 1.08996 * 109.47301 * 59.99617 * 21 20 2 35 35 H 1.09000 * 109.47653 * 180.02562 * 21 20 2 36 36 H 1.09002 * 109.47111 * 299.99677 * 21 20 2 37 37 H 1.09005 * 109.46942 * 60.00466 * 22 20 2 38 38 H 1.09002 * 109.47480 * 179.97438 * 22 20 2 39 39 H 1.08996 * 109.47040 * 300.00209 * 22 20 2 40 40 H 1.08999 * 109.47037 * 59.99623 * 23 20 2 41 41 H 1.08994 * 109.47519 * 180.02562 * 23 20 2 42 42 H 1.09000 * 109.46540 * 300.00272 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.4914 0.4800 -3.4065 7 6 1.7183 1.1240 -4.3115 8 6 2.1826 1.7990 -5.5763 9 7 2.0482 0.8717 -6.7025 10 6 2.4119 1.2670 -7.9621 11 1 2.7938 2.2638 -8.1261 12 6 2.2850 0.3881 -9.0291 13 7 2.6342 0.7682 -10.2398 14 14 1.6174 -1.3335 -8.7467 15 1 0.1405 -1.3233 -8.9014 16 1 2.2126 -2.2641 -9.7391 17 1 1.9684 -1.7818 -7.3751 18 7 0.4613 1.0480 -3.8600 19 7 0.4554 0.3919 -2.7535 20 6 2.0399 -0.7213 1.2492 21 6 3.5699 -0.7208 1.2496 22 6 1.5299 0.0000 2.4985 23 6 1.5299 -2.1638 1.2493 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6053 -1.7198 -1.2951 28 1 3.1263 -0.7994 -1.2056 29 1 3.5627 0.3482 -3.4454 30 1 3.2271 2.0918 -5.4695 31 1 1.5741 2.6845 -5.7601 32 1 1.7015 -0.0223 -6.5559 33 1 2.5451 0.1542 -10.9855 34 1 3.9329 0.3070 1.2498 35 1 3.9332 -1.2350 2.1393 36 1 3.9336 -1.2344 0.3596 37 1 0.4399 0.0000 2.4985 38 1 1.8928 -0.5141 3.3885 39 1 1.8933 1.0276 2.4985 40 1 1.8932 -2.6777 0.3593 41 1 1.8928 -2.6775 2.1394 42 1 0.4399 -2.1637 1.2492 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881326952.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:19 Heat of formation + Delta-G solvation = 100.639692 kcal Electronic energy + Delta-G solvation = -20400.894799 eV Core-core repulsion = 17418.566597 eV Total energy + Delta-G solvation = -2982.328202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.05140 -39.27239 -35.32627 -34.20864 -31.86288 -31.25089 -30.15429 -28.68873 -27.77549 -26.42920 -26.08777 -23.35234 -22.38470 -21.55229 -20.60884 -18.71102 -17.87139 -17.18623 -16.20407 -15.28762 -15.15198 -14.77856 -14.52218 -14.34811 -14.17679 -13.90671 -13.65003 -13.01829 -12.71788 -12.55495 -12.41625 -12.33860 -12.25273 -12.07263 -11.77766 -11.60824 -11.47858 -11.03733 -10.94664 -10.89566 -10.82499 -10.58819 -10.44303 -10.13835 -9.76971 -9.56192 -8.93058 -8.85961 -7.20011 -5.73215 -3.08465 1.79512 2.42218 2.83580 3.42067 3.47298 3.49798 4.09564 4.23571 4.27250 4.45355 4.64016 4.64177 4.71190 4.85071 5.02475 5.11933 5.18693 5.20794 5.26447 5.31209 5.37585 5.43203 5.49623 5.52143 5.60011 5.61040 5.65910 5.76625 5.77396 5.77632 5.83779 5.90800 6.00220 6.23418 6.37790 6.62509 6.71434 6.81974 8.01829 8.45755 8.79435 9.24100 9.96756 10.17215 11.45035 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.036314 B = 0.003695 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.858738 B = 7577.009634 C = 7702.496289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.090 4.090 3 H 0.078 0.922 4 C 0.115 3.885 5 N -0.295 5.295 6 C -0.045 4.045 7 C -0.013 4.013 8 C 0.238 3.762 9 N -0.750 5.750 10 C -0.243 4.243 11 H 0.093 0.907 12 C 0.006 3.994 13 N -0.934 5.934 14 Si 0.884 3.116 15 H -0.283 1.283 16 H -0.291 1.291 17 H -0.280 1.280 18 N -0.260 5.260 19 N -0.091 5.091 20 C -0.061 4.061 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.150 4.150 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.188 0.812 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.362 0.638 33 H 0.259 0.741 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.340 -4.774 28.378 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.006 4.006 5 N -0.089 5.089 6 C -0.196 4.196 7 C -0.151 4.151 8 C 0.110 3.890 9 N -0.396 5.396 10 C -0.372 4.372 11 H 0.111 0.889 12 C -0.189 4.189 13 N -0.582 5.582 14 Si 0.715 3.285 15 H -0.209 1.209 16 H -0.217 1.217 17 H -0.206 1.206 18 N -0.127 5.127 19 N -0.070 5.070 20 C -0.061 4.061 21 C -0.207 4.207 22 C -0.199 4.199 23 C -0.207 4.207 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.205 0.795 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.195 0.805 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.054 -4.666 28.614 28.992 hybrid contribution 0.809 -1.435 -0.114 1.651 sum 0.755 -6.101 28.501 29.156 Atomic orbital electron populations 1.22210 0.93469 1.02797 1.03746 1.21429 0.97923 0.99610 0.91945 0.90387 1.22372 1.01816 0.95278 0.81130 1.47325 1.06036 1.37506 1.18026 1.23458 0.99330 1.04887 0.91950 1.22496 0.89515 1.03336 0.99779 1.18898 0.97798 0.91975 0.80376 1.42660 1.79423 1.13132 1.04377 1.19054 1.35710 0.99932 0.82524 0.88886 1.24627 1.01256 0.97871 0.95180 1.69699 1.53975 1.35752 0.98747 0.86548 0.79222 0.85919 0.76849 1.20949 1.21723 1.20622 1.75116 1.20485 1.13813 1.03259 1.78112 1.03034 1.14437 1.11433 1.20513 0.95479 0.95693 0.94446 1.22012 0.94444 1.02169 1.02064 1.21910 1.01553 1.00122 0.96350 1.22035 1.01798 0.94991 1.01892 0.92343 0.92393 0.89454 0.88441 0.87699 0.79463 0.93709 0.93528 0.80504 0.93051 0.92324 0.92224 0.92413 0.92003 0.92507 0.92588 0.92509 0.92424 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 8.19 37.16 0.30 -1.22 16 2 C -0.09 -0.72 1.95 -90.62 -0.18 -0.89 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.12 1.02 5.21 -4.04 -0.02 1.00 16 5 N -0.30 -3.98 3.44 -61.26 -0.21 -4.19 16 6 C -0.05 -0.66 11.50 -17.05 -0.20 -0.86 16 7 C -0.01 -0.24 6.61 -82.78 -0.55 -0.79 16 8 C 0.24 4.90 6.82 -5.20 -0.04 4.86 16 9 N -0.75 -18.82 5.40 -61.08 -0.33 -19.15 16 10 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 11 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 12 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 13 N -0.93 -29.78 13.97 55.49 0.78 -29.01 16 14 Si 0.88 23.05 27.74 -169.99 -4.71 18.34 16 15 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 16 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 17 H -0.28 -6.98 6.52 56.52 0.37 -6.61 16 18 N -0.26 -5.11 12.41 33.28 0.41 -4.70 16 19 N -0.09 -1.52 10.24 60.35 0.62 -0.91 16 20 C -0.06 -0.36 0.57 -154.51 -0.09 -0.45 16 21 C -0.15 -0.80 8.13 37.16 0.30 -0.50 16 22 C -0.14 -0.83 8.12 37.16 0.30 -0.53 16 23 C -0.15 -0.86 7.77 37.16 0.29 -0.57 16 24 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 25 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 26 H 0.09 1.07 5.49 -51.92 -0.29 0.79 16 27 H 0.10 0.81 6.71 -51.93 -0.35 0.46 16 28 H 0.10 0.69 6.10 -51.93 -0.32 0.37 16 29 H 0.19 2.08 8.06 -52.48 -0.42 1.66 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.36 9.19 5.52 -40.82 -0.23 8.96 16 33 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.29 6.32 -51.93 -0.33 -0.04 16 37 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.32 6.54 -51.93 -0.34 -0.02 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 LS Contribution 326.74 15.07 4.92 4.92 Total: -1.00 -34.10 326.74 -5.22 -39.32 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.58 Total: 2.42 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.12 Total: -7.05 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 1.27 Total: -57.95 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.71 Total: 18.34 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.10 -5.22 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881326952.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.962 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds