Wall clock time and date at job start Mon Mar 30 2020 00:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.47128 * 2 1 4 4 C 1.35312 * 125.86927 * 125.00370 * 3 2 1 5 5 C 1.35349 * 106.17652 * 180.20050 * 4 3 2 6 6 C 1.50706 * 126.75155 * 179.77510 * 5 4 3 7 7 N 1.46898 * 109.46831 * 95.00103 * 6 5 4 8 8 C 1.46905 * 110.99764 * 189.99752 * 7 6 5 9 9 C 1.50702 * 109.47119 * 155.65790 * 8 7 6 10 10 H 1.07998 * 119.99607 * 2.96294 * 9 8 7 11 11 C 1.37872 * 120.00144 * 182.96453 * 9 8 7 12 12 N 1.31517 * 119.99972 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00120 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47089 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47111 * 120.00206 * 13 11 9 16 16 H 1.48503 * 109.46845 * 239.99865 * 13 11 9 17 17 C 1.46902 * 111.00101 * 66.04989 * 7 6 5 18 18 C 1.53006 * 109.47117 * 197.42918 * 17 7 6 19 19 C 1.53001 * 109.47176 * 60.95213 * 18 17 7 20 20 C 1.52997 * 109.47186 * 180.95285 * 18 17 7 21 21 N 1.33774 * 106.49791 * 359.64201 * 5 4 3 22 22 N 1.28633 * 108.88132 * 0.36574 * 21 5 4 23 23 H 1.09005 * 109.46614 * 300.00217 * 1 2 3 24 24 H 1.09001 * 109.47285 * 59.99685 * 1 2 3 25 25 H 1.08992 * 109.47412 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46832 * 239.99363 * 2 1 3 27 27 H 1.08999 * 109.46961 * 119.99889 * 2 1 3 28 28 H 1.07996 * 126.91222 * 359.93939 * 4 3 2 29 29 H 1.08998 * 109.47110 * 214.99870 * 6 5 4 30 30 H 1.08995 * 109.47248 * 335.00068 * 6 5 4 31 31 H 1.09001 * 109.47397 * 275.65938 * 8 7 6 32 32 H 1.08997 * 109.47069 * 35.65550 * 8 7 6 33 33 H 0.96996 * 119.99990 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.46861 * 317.42498 * 17 7 6 35 35 H 1.09000 * 109.47485 * 77.42522 * 17 7 6 36 36 H 1.08997 * 109.46930 * 300.95228 * 18 17 7 37 37 H 1.08992 * 109.46855 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.46525 * 300.00019 * 19 18 17 39 39 H 1.08997 * 109.47178 * 60.00168 * 19 18 17 40 40 H 1.09000 * 109.46907 * 59.99671 * 20 18 17 41 41 H 1.08992 * 109.47086 * 179.97438 * 20 18 17 42 42 H 1.08997 * 109.47139 * 299.99814 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8757 1.9190 0.8982 5 6 3.0503 3.2089 0.5272 6 6 3.9143 4.2354 1.2133 7 7 5.2314 4.2794 0.5643 8 6 6.1761 5.0896 1.3448 9 6 7.5857 4.6571 1.0332 10 1 7.7645 3.8932 0.2910 11 6 8.6469 5.2365 1.6956 12 7 8.4292 6.1671 2.5991 13 14 10.3942 4.7009 1.3089 14 1 10.3688 3.6473 0.2627 15 1 11.1725 5.8670 0.8191 16 1 11.0302 4.1623 2.5380 17 6 5.1231 4.7782 -0.8132 18 6 6.3899 4.4119 -1.5893 19 6 6.5412 2.8899 -1.6294 20 6 6.2873 4.9520 -3.0171 21 7 2.3073 3.3925 -0.5700 22 7 1.7061 2.2915 -0.8547 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.3263 1.4206 1.7437 29 1 3.4412 5.2148 1.1419 30 1 4.0351 3.9660 2.2625 31 1 6.0531 6.1413 1.0859 32 1 5.9805 4.9521 2.4082 33 1 9.1758 6.5745 3.0654 34 1 4.2573 4.3256 -1.2965 35 1 5.0062 5.8618 -0.7992 36 1 7.2575 4.8504 -1.0964 37 1 7.4438 2.6291 -2.1819 38 1 6.6143 2.5052 -0.6121 39 1 5.6736 2.4514 -2.1223 40 1 6.1794 6.0363 -2.9885 41 1 7.1898 4.6915 -3.5698 42 1 5.4197 4.5135 -3.5100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884003097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:48 Heat of formation + Delta-G solvation = 94.831195 kcal Electronic energy + Delta-G solvation = -20990.886566 eV Core-core repulsion = 18008.306489 eV Total energy + Delta-G solvation = -2982.580077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.99116 -37.48509 -35.42818 -33.74495 -32.63089 -30.94409 -30.72642 -27.37496 -26.35323 -26.15573 -24.67107 -23.80028 -21.61593 -21.11153 -20.14844 -18.87079 -17.23976 -16.33770 -16.31585 -15.10335 -14.71689 -14.61798 -14.46965 -14.03954 -13.77913 -13.23736 -13.06286 -12.60936 -12.50001 -12.31236 -12.11502 -11.89036 -11.66950 -11.62001 -11.24700 -11.10752 -10.98845 -10.68044 -10.58276 -10.36086 -10.10879 -10.06726 -9.83964 -9.77472 -9.34386 -8.99243 -8.85326 -8.32881 -7.16406 -5.96811 -3.95061 1.83399 2.45725 2.84612 3.33531 3.41668 3.46295 4.27272 4.47263 4.56314 4.67354 4.81514 5.09286 5.19938 5.23027 5.35722 5.38626 5.43465 5.68271 5.78363 5.81278 5.83289 6.06074 6.15154 6.25493 6.29142 6.40448 6.48809 6.53010 6.58739 6.66091 6.77758 6.82619 6.93607 7.23365 7.28830 7.39445 7.51507 7.93507 8.17925 8.30725 8.61272 8.79176 9.12499 9.66877 11.13727 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.023754 B = 0.004994 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.470712 B = 5605.482296 C = 5949.663925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 N -0.298 5.298 4 C -0.039 4.039 5 C 0.005 3.995 6 C 0.136 3.864 7 N -0.529 5.529 8 C 0.191 3.809 9 C -0.499 4.499 10 H 0.078 0.922 11 C 0.053 3.947 12 N -0.900 5.900 13 Si 0.890 3.110 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.286 1.286 17 C 0.071 3.929 18 C -0.105 4.105 19 C -0.125 4.125 20 C -0.143 4.143 21 N -0.266 5.266 22 N -0.096 5.096 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.188 0.812 29 H 0.040 0.960 30 H 0.086 0.914 31 H -0.006 1.006 32 H 0.028 0.972 33 H 0.259 0.741 34 H 0.065 0.935 35 H 0.020 0.980 36 H 0.110 0.890 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.028 0.972 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 -11.600 -3.664 17.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.007 4.007 3 N -0.093 5.093 4 C -0.190 4.190 5 C -0.133 4.133 6 C 0.006 3.994 7 N -0.253 5.253 8 C 0.067 3.933 9 C -0.538 4.538 10 H 0.096 0.904 11 C -0.148 4.148 12 N -0.540 5.540 13 Si 0.718 3.282 14 H -0.196 1.196 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.057 4.057 18 C -0.124 4.124 19 C -0.182 4.182 20 C -0.201 4.201 21 N -0.133 5.133 22 N -0.075 5.075 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.205 0.795 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.012 0.988 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.127 0.873 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.775 -11.662 -4.819 17.957 hybrid contribution 1.303 0.160 0.916 1.601 sum -11.472 -11.502 -3.903 16.708 Atomic orbital electron populations 1.22068 0.93018 1.03362 1.03953 1.21993 0.96585 0.77091 1.05027 1.47335 1.31105 1.11664 1.19205 1.23361 0.99995 0.95652 0.99997 1.22072 1.00654 0.94892 0.95649 1.20303 0.88930 0.93493 0.96683 1.62126 1.05739 1.55251 1.02216 1.19820 0.90534 0.90294 0.92697 1.21456 0.89906 1.21002 1.21399 0.90408 1.24995 0.99091 0.95357 0.95322 1.69970 1.31205 1.26892 1.25959 0.86556 0.84941 0.78494 0.78174 1.19570 1.21237 1.21208 1.22049 0.97548 0.96399 0.89706 1.21417 1.00804 0.96286 0.93850 1.21608 0.98356 0.96114 1.02163 1.21822 1.00325 1.00353 0.97589 1.75030 1.08929 1.15844 1.13506 1.78173 1.21332 0.93109 1.14913 0.91819 0.90760 0.90182 0.88618 0.87852 0.79513 0.94217 0.89614 0.98823 0.95410 0.93161 0.91693 0.96161 0.87254 0.94822 0.90896 0.95241 0.93413 0.93483 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.04 37.16 0.37 -0.73 16 2 C 0.11 0.87 7.17 -4.04 -0.03 0.84 16 3 N -0.30 -3.83 3.44 -61.27 -0.21 -4.04 16 4 C -0.04 -0.54 11.50 -17.05 -0.20 -0.74 16 5 C 0.01 0.09 6.02 -82.77 -0.50 -0.41 16 6 C 0.14 2.50 5.49 -4.97 -0.03 2.47 16 7 N -0.53 -11.23 3.70 -237.51 -0.88 -12.11 16 8 C 0.19 4.81 4.79 -4.97 -0.02 4.79 16 9 C -0.50 -13.36 7.24 -34.44 -0.25 -13.61 16 10 H 0.08 2.05 4.58 -52.49 -0.24 1.80 16 11 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 12 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 13 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.07 1.48 4.27 -3.82 -0.02 1.46 16 18 C -0.11 -2.12 2.40 -90.62 -0.22 -2.34 16 19 C -0.13 -2.41 8.40 37.16 0.31 -2.10 16 20 C -0.14 -2.48 9.19 37.16 0.34 -2.14 16 21 N -0.27 -4.86 11.04 33.29 0.37 -4.50 16 22 N -0.10 -1.56 12.91 60.35 0.78 -0.78 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.10 0.51 8.07 -51.93 -0.42 0.10 16 28 H 0.19 1.99 8.06 -52.49 -0.42 1.56 16 29 H 0.04 0.75 8.12 -51.93 -0.42 0.32 16 30 H 0.09 1.46 7.80 -51.93 -0.41 1.05 16 31 H -0.01 -0.17 7.67 -51.93 -0.40 -0.56 16 32 H 0.03 0.73 7.65 -51.93 -0.40 0.34 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.06 1.33 5.85 -51.93 -0.30 1.03 16 35 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 36 H 0.11 2.54 5.14 -51.93 -0.27 2.27 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 1.53 6.74 -51.93 -0.35 1.18 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 336.18 15.07 5.07 5.07 Total: -1.00 -31.50 336.18 -6.45 -37.96 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.97 Total: -1.28 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -0.33 Total: -11.12 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.79 Total: -46.96 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.50 -6.45 -37.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884003097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.787 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds