Wall clock time and date at job start Mon Mar 30 2020 00:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.47128 * 2 1 4 4 C 1.35312 * 125.86927 * 125.00370 * 3 2 1 5 5 C 1.35349 * 106.17652 * 180.20050 * 4 3 2 6 6 C 1.50706 * 126.75155 * 179.77510 * 5 4 3 7 7 N 1.46898 * 109.46831 * 95.00103 * 6 5 4 8 8 C 1.46905 * 110.99764 * 189.99752 * 7 6 5 9 9 C 1.50702 * 109.47119 * 155.65790 * 8 7 6 10 10 H 1.07998 * 119.99607 * 2.96294 * 9 8 7 11 11 C 1.37872 * 120.00144 * 182.96453 * 9 8 7 12 12 N 1.31517 * 119.99972 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00120 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47089 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47111 * 120.00206 * 13 11 9 16 16 H 1.48503 * 109.46845 * 239.99865 * 13 11 9 17 17 C 1.46902 * 111.00101 * 66.04989 * 7 6 5 18 18 C 1.53006 * 109.47117 * 197.42918 * 17 7 6 19 19 C 1.53001 * 109.47176 * 60.95213 * 18 17 7 20 20 C 1.52997 * 109.47186 * 180.95285 * 18 17 7 21 21 N 1.33774 * 106.49791 * 359.64201 * 5 4 3 22 22 N 1.28633 * 108.88132 * 0.36574 * 21 5 4 23 23 H 1.09005 * 109.46614 * 300.00217 * 1 2 3 24 24 H 1.09001 * 109.47285 * 59.99685 * 1 2 3 25 25 H 1.08992 * 109.47412 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46832 * 239.99363 * 2 1 3 27 27 H 1.08999 * 109.46961 * 119.99889 * 2 1 3 28 28 H 1.07996 * 126.91222 * 359.93939 * 4 3 2 29 29 H 1.08998 * 109.47110 * 214.99870 * 6 5 4 30 30 H 1.08995 * 109.47248 * 335.00068 * 6 5 4 31 31 H 1.09001 * 109.47397 * 275.65938 * 8 7 6 32 32 H 1.08997 * 109.47069 * 35.65550 * 8 7 6 33 33 H 0.96996 * 119.99990 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.46861 * 317.42498 * 17 7 6 35 35 H 1.09000 * 109.47485 * 77.42522 * 17 7 6 36 36 H 1.08997 * 109.46930 * 300.95228 * 18 17 7 37 37 H 1.08992 * 109.46855 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.46525 * 300.00019 * 19 18 17 39 39 H 1.08997 * 109.47178 * 60.00168 * 19 18 17 40 40 H 1.09000 * 109.46907 * 59.99671 * 20 18 17 41 41 H 1.08992 * 109.47086 * 179.97438 * 20 18 17 42 42 H 1.08997 * 109.47139 * 299.99814 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8757 1.9190 0.8982 5 6 3.0503 3.2089 0.5272 6 6 3.9143 4.2354 1.2133 7 7 5.2314 4.2794 0.5643 8 6 6.1761 5.0896 1.3448 9 6 7.5857 4.6571 1.0332 10 1 7.7645 3.8932 0.2910 11 6 8.6469 5.2365 1.6956 12 7 8.4292 6.1671 2.5991 13 14 10.3942 4.7009 1.3089 14 1 10.3688 3.6473 0.2627 15 1 11.1725 5.8670 0.8191 16 1 11.0302 4.1623 2.5380 17 6 5.1231 4.7782 -0.8132 18 6 6.3899 4.4119 -1.5893 19 6 6.5412 2.8899 -1.6294 20 6 6.2873 4.9520 -3.0171 21 7 2.3073 3.3925 -0.5700 22 7 1.7061 2.2915 -0.8547 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.3263 1.4206 1.7437 29 1 3.4412 5.2148 1.1419 30 1 4.0351 3.9660 2.2625 31 1 6.0531 6.1413 1.0859 32 1 5.9805 4.9521 2.4082 33 1 9.1758 6.5745 3.0654 34 1 4.2573 4.3256 -1.2965 35 1 5.0062 5.8618 -0.7992 36 1 7.2575 4.8504 -1.0964 37 1 7.4438 2.6291 -2.1819 38 1 6.6143 2.5052 -0.6121 39 1 5.6736 2.4514 -2.1223 40 1 6.1794 6.0363 -2.9885 41 1 7.1898 4.6915 -3.5698 42 1 5.4197 4.5135 -3.5100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884003097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:47 Heat of formation + Delta-G solvation = 74.764988 kcal Electronic energy + Delta-G solvation = -20991.756702 eV Core-core repulsion = 18008.306489 eV Total energy + Delta-G solvation = -2983.450213 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.13927 -39.16567 -36.38385 -35.30098 -34.62183 -32.30301 -31.63140 -29.25726 -27.85279 -27.69417 -25.60669 -25.46145 -23.05976 -22.49406 -21.38093 -20.55508 -18.52107 -18.02131 -17.44440 -16.72608 -16.42634 -15.82926 -15.70789 -15.52735 -15.12886 -14.72048 -14.19049 -14.11175 -13.91382 -13.56127 -13.49364 -13.19455 -13.00715 -12.88440 -12.75614 -12.66220 -12.44206 -12.35575 -12.23989 -11.84354 -11.72584 -11.64751 -11.41623 -11.22463 -10.95981 -10.84538 -10.44812 -10.09483 -8.96024 -8.08452 -6.13143 0.74112 1.44424 1.46154 1.53043 1.58829 1.60602 2.47864 3.22663 3.34528 3.56580 3.73062 4.01253 4.02540 4.17346 4.22643 4.30435 4.33999 4.50763 4.52040 4.67036 4.74148 4.77986 4.81370 4.88211 4.90141 5.01382 5.05110 5.12716 5.15497 5.20254 5.26250 5.29225 5.33654 5.42586 5.64501 5.78535 5.81263 5.89030 6.19406 6.46358 6.68118 7.01354 7.52966 7.60136 9.02423 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.023754 B = 0.004994 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.470712 B = 5605.482296 C = 5949.663925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 N -0.285 5.285 4 C -0.021 4.021 5 C -0.022 4.022 6 C 0.138 3.862 7 N -0.524 5.524 8 C 0.207 3.793 9 C -0.500 4.500 10 H 0.084 0.916 11 C 0.000 4.000 12 N -0.938 5.938 13 Si 0.955 3.045 14 H -0.260 1.260 15 H -0.286 1.286 16 H -0.282 1.282 17 C 0.078 3.922 18 C -0.107 4.107 19 C -0.114 4.114 20 C -0.137 4.137 21 N -0.302 5.302 22 N -0.114 5.114 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.139 0.861 28 H 0.223 0.777 29 H 0.027 0.973 30 H 0.097 0.903 31 H -0.040 1.040 32 H 0.011 0.989 33 H 0.260 0.740 34 H 0.071 0.929 35 H 0.000 1.000 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.037 0.963 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.150 -14.428 -4.275 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.018 4.018 3 N -0.080 5.080 4 C -0.173 4.173 5 C -0.161 4.161 6 C 0.009 3.991 7 N -0.248 5.248 8 C 0.081 3.919 9 C -0.539 4.539 10 H 0.102 0.898 11 C -0.197 4.197 12 N -0.580 5.580 13 Si 0.781 3.219 14 H -0.184 1.184 15 H -0.212 1.212 16 H -0.208 1.208 17 C -0.051 4.051 18 C -0.125 4.125 19 C -0.171 4.171 20 C -0.195 4.195 21 N -0.169 5.169 22 N -0.093 5.093 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.157 0.843 28 H 0.239 0.761 29 H 0.045 0.955 30 H 0.116 0.884 31 H -0.023 1.023 32 H 0.029 0.971 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.018 0.982 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.743 -14.523 -5.458 20.078 hybrid contribution 1.157 0.964 1.114 1.873 sum -11.586 -13.559 -4.344 18.357 Atomic orbital electron populations 1.22053 0.92313 1.04968 1.02572 1.22572 0.97219 0.74490 1.07489 1.47782 1.29712 1.12801 1.17672 1.23788 0.98804 0.94512 1.00196 1.21863 1.01771 0.96007 0.96473 1.20260 0.87634 0.93839 0.97409 1.62093 1.06871 1.53667 1.02170 1.19501 0.91456 0.88884 0.92095 1.21747 0.90585 1.20604 1.20942 0.89844 1.25808 1.03188 0.95440 0.95250 1.70100 1.32373 1.28300 1.27258 0.85533 0.79962 0.78186 0.78211 1.18420 1.21227 1.20769 1.22013 0.98293 0.95142 0.89610 1.21363 0.98832 0.97138 0.95208 1.21470 0.99395 0.94959 1.01261 1.21753 1.01633 1.00261 0.95809 1.74962 1.10067 1.17333 1.14564 1.78081 1.21807 0.93383 1.16015 0.92566 0.92747 0.87059 0.87253 0.84321 0.76056 0.95488 0.88445 1.02268 0.97128 0.93156 0.91078 0.98155 0.90423 0.93399 0.92783 0.94412 0.93526 0.91845 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.04 71.98 0.72 -0.97 16 2 C 0.10 1.18 7.17 86.38 0.62 1.80 16 3 N -0.28 -6.63 3.44 -347.75 -1.20 -7.83 16 4 C -0.02 -0.53 11.50 83.49 0.96 0.43 16 5 C -0.02 -0.75 6.02 41.60 0.25 -0.50 16 6 C 0.14 5.17 5.49 85.56 0.47 5.64 16 7 N -0.52 -22.68 3.70 -905.34 -3.35 -26.03 16 8 C 0.21 10.77 4.79 85.56 0.41 11.18 16 9 C -0.50 -27.15 7.24 25.60 0.19 -26.96 16 10 H 0.08 4.38 4.58 -2.91 -0.01 4.36 16 11 C 0.00 0.01 5.46 84.65 0.46 0.47 16 12 N -0.94 -55.91 13.29 21.45 0.28 -55.63 16 13 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 14 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 15 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 C 0.08 3.29 4.27 86.30 0.37 3.66 16 18 C -0.11 -4.27 2.40 -10.79 -0.03 -4.30 16 19 C -0.11 -4.19 8.40 71.98 0.60 -3.58 16 20 C -0.14 -4.57 9.19 71.98 0.66 -3.91 16 21 N -0.30 -11.03 11.04 -48.60 -0.54 -11.56 16 22 N -0.11 -3.58 12.91 37.02 0.48 -3.10 16 23 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.05 0.80 8.12 -2.39 -0.02 0.79 16 25 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.14 0.69 8.07 -2.39 -0.02 0.67 16 28 H 0.22 3.85 8.06 -2.91 -0.02 3.82 16 29 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 30 H 0.10 3.34 7.80 -2.39 -0.02 3.32 16 31 H -0.04 -2.35 7.67 -2.39 -0.02 -2.37 16 32 H 0.01 0.58 7.65 -2.39 -0.02 0.57 16 33 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.07 2.95 5.85 -2.39 -0.01 2.93 16 35 H 0.00 0.01 7.74 -2.39 -0.02 -0.01 16 36 H 0.08 3.63 5.14 -2.39 -0.01 3.62 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 2.19 6.74 -2.39 -0.02 2.17 16 39 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -69.81 336.18 4.38 -65.43 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.98 Total: 9.93 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 5.69 Total: -17.05 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -4.32 Total: -104.15 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -69.81 4.38 -65.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884003097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.192 kcal (2) G-P(sol) polarization free energy of solvation -69.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds