Wall clock time and date at job start Mon Mar 30 2020 00:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99660 * 2 1 4 4 C 1.50706 * 109.46736 * 66.04933 * 3 2 1 5 5 C 1.35353 * 126.75076 * 94.99777 * 4 3 2 6 6 N 1.35309 * 106.17498 * 179.97438 * 5 4 3 7 7 C 1.46499 * 125.87027 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47215 * 124.97307 * 7 6 5 9 9 C 1.50701 * 109.47206 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00015 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00029 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99708 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99941 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47163 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.46872 * 119.99922 * 13 11 9 16 16 H 1.48498 * 109.46760 * 240.00177 * 13 11 9 17 17 N 1.28714 * 108.26535 * 359.97438 * 6 5 4 18 18 N 1.28637 * 110.18046 * 0.02562 * 17 6 5 19 19 C 1.46900 * 110.99809 * 236.05122 * 2 1 3 20 20 C 1.52999 * 109.46940 * 183.95107 * 19 2 1 21 21 C 1.52999 * 109.47441 * 303.94870 * 19 2 1 22 22 C 1.53002 * 109.47133 * 63.95330 * 19 2 1 23 23 H 1.09000 * 109.47181 * 59.99817 * 1 2 3 24 24 H 1.09010 * 109.46749 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47422 * 299.99518 * 1 2 3 26 26 H 1.08998 * 109.47600 * 306.05083 * 3 2 1 27 27 H 1.08994 * 109.46947 * 186.04608 * 3 2 1 28 28 H 1.08002 * 126.91189 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.47592 * 244.97299 * 7 6 5 30 30 H 1.09007 * 109.46901 * 4.97623 * 7 6 5 31 31 H 1.09001 * 109.47531 * 300.00255 * 8 7 6 32 32 H 1.09007 * 109.46928 * 60.00332 * 8 7 6 33 33 H 0.96999 * 119.99613 * 179.97438 * 12 11 9 34 34 H 1.09001 * 109.47059 * 59.99899 * 20 19 2 35 35 H 1.09001 * 109.47118 * 180.02562 * 20 19 2 36 36 H 1.09006 * 109.47399 * 300.00042 * 20 19 2 37 37 H 1.09003 * 109.46915 * 60.00271 * 21 19 2 38 38 H 1.08991 * 109.47071 * 180.02562 * 21 19 2 39 39 H 1.08994 * 109.47295 * 300.00783 * 21 19 2 40 40 H 1.08996 * 109.47394 * 59.99568 * 22 19 2 41 41 H 1.09002 * 109.47018 * 180.02562 * 22 19 2 42 42 H 1.09003 * 109.47066 * 299.99632 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2986 5 6 2.4098 2.1349 2.4062 6 7 1.6852 2.8240 3.3178 7 6 2.1156 3.1655 4.6758 8 6 2.0029 4.6775 4.8815 9 6 2.4462 5.0289 6.2783 10 1 2.7759 4.2517 6.9518 11 6 2.4310 6.3427 6.6964 12 7 2.0291 7.2891 5.8763 13 14 2.9812 6.7783 8.4275 14 1 3.3824 5.5418 9.1454 15 1 4.1363 7.7091 8.3602 16 1 1.8617 7.4303 9.1533 17 7 0.5528 3.1278 2.7868 18 7 0.4924 2.6787 1.5829 19 6 1.9954 -0.7659 -1.1377 20 6 3.5217 -0.8262 -1.0493 21 6 1.4261 -2.1856 -1.1039 22 6 1.5868 -0.0835 -2.4447 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.5610 1.9275 -0.8308 27 1 3.0796 1.3445 -0.1082 28 1 3.4048 1.7354 2.5362 29 1 1.4808 2.6523 5.3981 30 1 3.1511 2.8558 4.8175 31 1 2.6377 5.1908 4.1593 32 1 0.9674 4.9872 4.7399 33 1 2.0180 8.2133 6.1706 34 1 3.8128 -1.3124 -0.1182 35 1 3.9123 -1.3941 -1.8937 36 1 3.9273 0.1852 -1.0734 37 1 0.3388 -2.1426 -1.1669 38 1 1.8171 -2.7540 -1.9478 39 1 1.7172 -2.6717 -0.1728 40 1 1.9924 0.9280 -2.4688 41 1 1.9770 -0.6520 -3.2889 42 1 0.4995 -0.0405 -2.5076 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905057604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:50 Heat of formation + Delta-G solvation = 92.701592 kcal Electronic energy + Delta-G solvation = -20262.639469 eV Core-core repulsion = 17279.967045 eV Total energy + Delta-G solvation = -2982.672424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.71188 -39.21323 -35.11467 -33.37363 -32.63732 -30.80243 -29.87412 -28.53058 -27.52593 -26.01096 -25.52436 -24.26191 -22.39036 -21.24295 -20.01869 -18.76140 -17.05285 -16.47399 -15.89434 -15.70818 -14.99848 -14.92804 -14.52231 -14.34402 -13.96746 -13.73185 -13.54731 -12.80960 -12.54452 -12.46920 -12.18505 -12.11815 -12.05305 -11.70912 -11.49283 -11.35594 -11.20216 -11.14539 -10.90886 -10.82838 -10.70580 -10.49494 -10.27015 -9.99270 -9.41143 -9.24648 -8.77608 -8.52501 -8.26950 -6.16447 -4.23013 2.18742 2.87775 3.05369 3.22881 3.31030 3.33868 3.97686 4.33279 4.62032 4.65895 4.83161 4.92170 4.99832 5.19872 5.21998 5.29532 5.38330 5.39466 5.47291 5.50887 5.60055 5.67517 5.68685 5.70875 5.74851 5.87689 5.88307 5.92106 6.02168 6.16447 6.18395 6.24277 6.43613 6.56640 7.01814 7.10425 7.12013 7.42127 7.51694 7.79421 8.11208 8.82590 9.08285 9.42540 10.94660 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.048797 B = 0.003198 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.668236 B = 8753.120631 C = 8889.660145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.525 5.525 3 C 0.142 3.858 4 C -0.031 4.031 5 C -0.041 4.041 6 N -0.271 5.271 7 C 0.112 3.888 8 C 0.015 3.985 9 C -0.531 4.531 10 H 0.061 0.939 11 C 0.062 3.938 12 N -0.886 5.886 13 Si 0.899 3.101 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.282 1.282 17 N -0.075 5.075 18 N -0.284 5.284 19 C 0.101 3.899 20 C -0.142 4.142 21 C -0.140 4.140 22 C -0.183 4.183 23 H 0.028 0.972 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.182 0.818 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.023 0.977 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 -16.918 -13.843 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.250 5.250 3 C 0.013 3.987 4 C -0.170 4.170 5 C -0.194 4.194 6 N -0.064 5.064 7 C -0.007 4.007 8 C -0.023 4.023 9 C -0.570 4.570 10 H 0.079 0.921 11 C -0.141 4.141 12 N -0.524 5.524 13 Si 0.727 3.273 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.208 1.208 17 N -0.054 5.054 18 N -0.150 5.150 19 C 0.011 3.989 20 C -0.199 4.199 21 C -0.197 4.197 22 C -0.241 4.241 23 H 0.047 0.953 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.199 0.801 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.416 -16.244 -13.159 20.953 hybrid contribution 1.134 0.334 0.209 1.200 sum 2.550 -15.910 -12.950 20.672 Atomic orbital electron populations 1.22478 0.87106 1.01443 1.01756 1.62231 1.08407 1.12863 1.41467 1.20247 1.00065 0.87260 0.91153 1.21573 0.93044 1.04948 0.97448 1.23289 1.01472 1.03974 0.90666 1.47885 1.10846 1.33398 1.14254 1.22716 1.00282 1.02888 0.74780 1.19404 0.99480 0.85497 0.97908 1.20986 1.45491 0.93104 0.97418 0.92056 1.25009 0.94924 0.96370 0.97807 1.69988 1.46193 1.00674 1.35544 0.86424 0.78392 0.78568 0.83965 1.19571 1.20857 1.20788 1.78302 1.04444 1.19187 1.03513 1.74998 1.20978 1.12488 1.06585 1.21085 0.95397 0.93965 0.88449 1.21927 0.93682 1.02100 1.02213 1.21911 1.00909 0.94832 1.02093 1.22515 1.01968 1.01314 0.98352 0.95342 0.91601 0.90529 0.93128 0.89121 0.80109 0.89274 0.88819 0.95855 0.94441 0.92651 0.91639 0.92343 0.92303 0.92393 0.92382 0.91789 0.92233 0.92187 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.57 60.07 0.51 0.76 16 2 N -0.53 -6.09 4.57 -228.59 -1.04 -7.13 16 3 C 0.14 1.78 4.63 -4.97 -0.02 1.75 16 4 C -0.03 -0.50 5.96 -82.77 -0.49 -0.99 16 5 C -0.04 -0.66 11.50 -17.05 -0.20 -0.86 16 6 N -0.27 -5.20 3.44 -61.26 -0.21 -5.41 16 7 C 0.11 2.18 6.39 -4.04 -0.03 2.15 16 8 C 0.01 0.37 5.10 -27.88 -0.14 0.23 16 9 C -0.53 -14.17 9.11 -34.44 -0.31 -14.48 16 10 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 13 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 17 N -0.07 -1.60 12.91 60.35 0.78 -0.82 16 18 N -0.28 -5.58 11.44 33.29 0.38 -5.20 16 19 C 0.10 0.91 0.71 -131.60 -0.09 0.82 16 20 C -0.14 -1.13 8.27 37.16 0.31 -0.83 16 21 C -0.14 -1.13 8.12 37.16 0.30 -0.83 16 22 C -0.18 -1.55 7.79 37.16 0.29 -1.26 16 23 H 0.03 0.33 6.61 -51.93 -0.34 -0.01 16 24 H 0.07 0.70 6.01 -51.92 -0.31 0.39 16 25 H 0.08 1.14 6.55 -51.93 -0.34 0.80 16 26 H 0.05 0.65 6.86 -51.93 -0.36 0.29 16 27 H 0.09 0.96 5.83 -51.93 -0.30 0.66 16 28 H 0.18 2.20 8.06 -52.49 -0.42 1.78 16 29 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 31 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.04 1.04 8.12 -51.93 -0.42 0.62 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.47 6.20 -51.93 -0.32 0.14 16 37 H 0.06 0.47 6.26 -51.93 -0.33 0.15 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.53 6.63 -51.93 -0.34 0.18 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.53 6.58 -51.93 -0.34 0.19 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -30.79 332.93 -6.08 -36.88 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.75 Total: -1.81 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 0.03 Total: -11.93 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.64 Total: -43.94 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.79 -6.08 -36.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905057604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.580 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds