Wall clock time and date at job start Mon Mar 30 2020 00:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99660 * 2 1 4 4 C 1.50706 * 109.46736 * 66.04933 * 3 2 1 5 5 C 1.35353 * 126.75076 * 94.99777 * 4 3 2 6 6 N 1.35309 * 106.17498 * 179.97438 * 5 4 3 7 7 C 1.46499 * 125.87027 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47215 * 124.97307 * 7 6 5 9 9 C 1.50701 * 109.47206 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00015 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00029 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99708 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99941 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47163 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.46872 * 119.99922 * 13 11 9 16 16 H 1.48498 * 109.46760 * 240.00177 * 13 11 9 17 17 N 1.28714 * 108.26535 * 359.97438 * 6 5 4 18 18 N 1.28637 * 110.18046 * 0.02562 * 17 6 5 19 19 C 1.46900 * 110.99809 * 236.05122 * 2 1 3 20 20 C 1.52999 * 109.46940 * 183.95107 * 19 2 1 21 21 C 1.52999 * 109.47441 * 303.94870 * 19 2 1 22 22 C 1.53002 * 109.47133 * 63.95330 * 19 2 1 23 23 H 1.09000 * 109.47181 * 59.99817 * 1 2 3 24 24 H 1.09010 * 109.46749 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47422 * 299.99518 * 1 2 3 26 26 H 1.08998 * 109.47600 * 306.05083 * 3 2 1 27 27 H 1.08994 * 109.46947 * 186.04608 * 3 2 1 28 28 H 1.08002 * 126.91189 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.47592 * 244.97299 * 7 6 5 30 30 H 1.09007 * 109.46901 * 4.97623 * 7 6 5 31 31 H 1.09001 * 109.47531 * 300.00255 * 8 7 6 32 32 H 1.09007 * 109.46928 * 60.00332 * 8 7 6 33 33 H 0.96999 * 119.99613 * 179.97438 * 12 11 9 34 34 H 1.09001 * 109.47059 * 59.99899 * 20 19 2 35 35 H 1.09001 * 109.47118 * 180.02562 * 20 19 2 36 36 H 1.09006 * 109.47399 * 300.00042 * 20 19 2 37 37 H 1.09003 * 109.46915 * 60.00271 * 21 19 2 38 38 H 1.08991 * 109.47071 * 180.02562 * 21 19 2 39 39 H 1.08994 * 109.47295 * 300.00783 * 21 19 2 40 40 H 1.08996 * 109.47394 * 59.99568 * 22 19 2 41 41 H 1.09002 * 109.47018 * 180.02562 * 22 19 2 42 42 H 1.09003 * 109.47066 * 299.99632 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2986 5 6 2.4098 2.1349 2.4062 6 7 1.6852 2.8240 3.3178 7 6 2.1156 3.1655 4.6758 8 6 2.0029 4.6775 4.8815 9 6 2.4462 5.0289 6.2783 10 1 2.7759 4.2517 6.9518 11 6 2.4310 6.3427 6.6964 12 7 2.0291 7.2891 5.8763 13 14 2.9812 6.7783 8.4275 14 1 3.3824 5.5418 9.1454 15 1 4.1363 7.7091 8.3602 16 1 1.8617 7.4303 9.1533 17 7 0.5528 3.1278 2.7868 18 7 0.4924 2.6787 1.5829 19 6 1.9954 -0.7659 -1.1377 20 6 3.5217 -0.8262 -1.0493 21 6 1.4261 -2.1856 -1.1039 22 6 1.5868 -0.0835 -2.4447 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.5610 1.9275 -0.8308 27 1 3.0796 1.3445 -0.1082 28 1 3.4048 1.7354 2.5362 29 1 1.4808 2.6523 5.3981 30 1 3.1511 2.8558 4.8175 31 1 2.6377 5.1908 4.1593 32 1 0.9674 4.9872 4.7399 33 1 2.0180 8.2133 6.1706 34 1 3.8128 -1.3124 -0.1182 35 1 3.9123 -1.3941 -1.8937 36 1 3.9273 0.1852 -1.0734 37 1 0.3388 -2.1426 -1.1669 38 1 1.8171 -2.7540 -1.9478 39 1 1.7172 -2.6717 -0.1728 40 1 1.9924 0.9280 -2.4688 41 1 1.9770 -0.6520 -3.2889 42 1 0.4995 -0.0405 -2.5076 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905057604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:49 Heat of formation + Delta-G solvation = 72.180090 kcal Electronic energy + Delta-G solvation = -20263.529348 eV Core-core repulsion = 17279.967045 eV Total energy + Delta-G solvation = -2983.562303 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.12515 -40.03620 -36.73795 -34.91488 -34.01390 -31.99240 -31.61149 -29.42984 -28.17766 -27.38886 -26.85729 -25.25508 -24.21581 -22.61373 -21.47632 -19.56779 -18.87149 -17.68628 -17.39335 -16.93441 -16.48413 -15.99995 -15.92705 -15.33033 -15.16750 -14.82672 -14.57565 -14.38079 -13.90644 -13.61188 -13.24291 -13.16068 -12.97036 -12.81666 -12.72547 -12.57897 -12.56820 -12.29595 -12.18496 -12.04920 -11.93768 -11.86958 -11.62887 -11.41840 -11.37273 -10.83094 -10.63828 -10.10735 -9.19214 -8.26561 -6.40795 0.80513 1.41797 1.42817 1.54640 1.55983 1.65040 2.39634 3.05493 3.08949 3.52469 3.78409 3.94699 4.01857 4.09107 4.19609 4.27431 4.28989 4.37606 4.51446 4.57464 4.66114 4.72020 4.76360 4.81674 4.95130 4.99870 5.03656 5.05705 5.09803 5.11460 5.22561 5.30871 5.33956 5.42188 5.47248 5.52239 5.61974 5.80947 6.06033 6.09757 6.28140 6.76016 7.30498 7.65005 8.86319 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.048797 B = 0.003198 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.668236 B = 8753.120631 C = 8889.660145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.530 5.530 3 C 0.146 3.854 4 C -0.033 4.033 5 C -0.030 4.030 6 N -0.280 5.280 7 C 0.126 3.874 8 C 0.024 3.976 9 C -0.542 4.542 10 H 0.081 0.919 11 C 0.000 4.000 12 N -0.934 5.934 13 Si 0.974 3.026 14 H -0.252 1.252 15 H -0.279 1.279 16 H -0.283 1.283 17 N -0.130 5.130 18 N -0.303 5.303 19 C 0.098 3.902 20 C -0.140 4.140 21 C -0.138 4.138 22 C -0.180 4.180 23 H 0.027 0.973 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.116 0.884 28 H 0.226 0.774 29 H 0.098 0.902 30 H 0.130 0.870 31 H -0.008 1.008 32 H -0.005 1.005 33 H 0.265 0.735 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.784 -19.096 -13.783 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.254 5.254 3 C 0.017 3.983 4 C -0.173 4.173 5 C -0.182 4.182 6 N -0.073 5.073 7 C 0.007 3.993 8 C -0.014 4.014 9 C -0.580 4.580 10 H 0.099 0.901 11 C -0.199 4.199 12 N -0.574 5.574 13 Si 0.798 3.202 14 H -0.175 1.175 15 H -0.205 1.205 16 H -0.209 1.209 17 N -0.109 5.109 18 N -0.169 5.169 19 C 0.009 3.991 20 C -0.197 4.197 21 C -0.195 4.195 22 C -0.239 4.239 23 H 0.046 0.954 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.134 0.866 28 H 0.243 0.757 29 H 0.116 0.884 30 H 0.148 0.852 31 H 0.011 0.989 32 H 0.013 0.987 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.542 -18.445 -13.107 22.903 hybrid contribution 0.468 0.945 0.067 1.057 sum 4.010 -17.500 -13.039 22.189 Atomic orbital electron populations 1.22367 0.87883 1.01842 1.00112 1.62232 1.07795 1.12295 1.43123 1.20344 1.01508 0.87526 0.88915 1.22248 0.91900 1.04137 0.99003 1.24042 1.02572 1.02188 0.89429 1.47848 1.10912 1.34039 1.14514 1.22476 1.02615 0.98724 0.75506 1.19142 0.96004 0.89469 0.96796 1.21494 1.44541 0.93688 0.98267 0.90087 1.26061 0.94989 0.96474 1.02370 1.70149 1.48003 1.01147 1.38057 0.85255 0.77687 0.78822 0.78401 1.17513 1.20508 1.20926 1.78298 1.06231 1.21697 1.04692 1.74948 1.22765 1.12965 1.06232 1.21231 0.96275 0.93988 0.87612 1.21924 0.92502 1.02461 1.02833 1.21901 1.00702 0.94306 1.02612 1.22486 1.01448 1.01247 0.98689 0.95440 0.90167 0.93694 0.93648 0.86580 0.75736 0.88399 0.85159 0.98945 0.98687 0.92665 0.91920 0.90690 0.92170 0.92785 0.90616 0.92287 0.92737 0.90531 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 8.57 127.69 1.09 1.72 16 2 N -0.53 -11.42 4.57 -877.12 -4.01 -15.43 16 3 C 0.15 3.42 4.63 85.56 0.40 3.82 16 4 C -0.03 -1.04 5.96 41.60 0.25 -0.79 16 5 C -0.03 -0.89 11.50 83.49 0.96 0.07 16 6 N -0.28 -10.69 3.44 -347.73 -1.20 -11.89 16 7 C 0.13 4.77 6.39 86.38 0.55 5.32 16 8 C 0.02 1.23 5.10 29.85 0.15 1.38 16 9 C -0.54 -28.81 9.11 25.60 0.23 -28.57 16 10 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 11 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 12 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 13 Si 0.97 42.46 29.54 68.60 2.03 44.48 16 14 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 17 N -0.13 -5.79 12.91 37.02 0.48 -5.31 16 18 N -0.30 -12.22 11.44 -48.59 -0.56 -12.78 16 19 C 0.10 1.54 0.71 3.53 0.00 1.54 16 20 C -0.14 -1.79 8.27 71.98 0.60 -1.19 16 21 C -0.14 -1.90 8.12 71.98 0.58 -1.32 16 22 C -0.18 -2.68 7.79 71.98 0.56 -2.12 16 23 H 0.03 0.65 6.61 -2.39 -0.02 0.63 16 24 H 0.08 1.64 6.01 -2.38 -0.01 1.63 16 25 H 0.04 1.37 6.55 -2.39 -0.02 1.35 16 26 H 0.05 1.12 6.86 -2.39 -0.02 1.10 16 27 H 0.12 2.12 5.83 -2.39 -0.01 2.10 16 28 H 0.23 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 30 H 0.13 3.96 8.07 -2.38 -0.02 3.94 16 31 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H -0.01 -0.31 8.12 -2.38 -0.02 -0.33 16 33 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.75 6.20 -2.38 -0.01 0.74 16 37 H 0.05 0.78 6.26 -2.39 -0.01 0.77 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 0.87 6.63 -2.39 -0.02 0.85 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.05 0.83 6.58 -2.39 -0.02 0.82 16 Total: -1.00 -69.71 332.93 3.86 -65.84 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.99 Total: 11.11 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 5.84 Total: -19.71 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -5.00 Total: -101.73 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -69.71 3.86 -65.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905057604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.024 kcal (2) G-P(sol) polarization free energy of solvation -69.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds