Wall clock time and date at job start Mon Mar 30 2020 00:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.35311 * 125.86902 * 274.71990 * 4 2 1 6 6 C 1.35351 * 106.17601 * 179.90232 * 5 4 2 7 7 C 1.50696 * 126.75268 * 180.12576 * 6 5 4 8 8 H 1.09002 * 109.46809 * 325.24079 * 7 6 5 9 9 C 1.52989 * 109.47241 * 85.24376 * 7 6 5 10 10 N 1.46905 * 109.46932 * 205.24700 * 7 6 5 11 11 C 1.46901 * 110.99676 * 154.99951 * 10 7 6 12 12 C 1.53009 * 109.46864 * 179.97438 * 11 10 7 13 13 C 1.52992 * 109.46955 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46852 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00068 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99689 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00355 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99700 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47250 * 59.99990 * 18 16 14 20 20 H 1.48499 * 109.47110 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47161 * 300.00135 * 18 16 14 22 22 N 1.33773 * 106.49488 * 0.34681 * 6 5 4 23 23 N 1.28636 * 108.88619 * 359.78007 * 22 6 5 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.07996 * 126.91285 * 0.02562 * 5 4 2 32 32 H 1.09002 * 109.47462 * 60.00102 * 9 7 6 33 33 H 1.09005 * 109.47302 * 179.97438 * 9 7 6 34 34 H 1.08999 * 109.47381 * 299.99817 * 9 7 6 35 35 H 1.00896 * 111.00299 * 31.04100 * 10 7 6 36 36 H 1.08994 * 109.47414 * 299.99215 * 11 10 7 37 37 H 1.08997 * 109.47366 * 59.99932 * 11 10 7 38 38 H 1.09004 * 109.46693 * 299.99873 * 12 11 10 39 39 H 1.08997 * 109.46970 * 59.99953 * 12 11 10 40 40 H 1.08994 * 109.47484 * 299.99577 * 13 12 11 41 41 H 1.08997 * 109.47204 * 60.00238 * 13 12 11 42 42 H 0.96998 * 119.99982 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1977 -0.1330 2.4159 6 6 2.6558 -1.1217 3.2188 7 6 3.0065 -1.0071 4.6799 8 1 3.4320 -0.0227 4.8752 9 6 1.7440 -1.1936 5.5236 10 7 3.9874 -2.0429 5.0307 11 6 4.7838 -1.6401 6.1976 12 6 5.7914 -2.7419 6.5322 13 6 6.6212 -2.3222 7.7471 14 6 7.6132 -3.4076 8.0771 15 1 7.6485 -4.3067 7.4797 16 6 8.4764 -3.2524 9.1410 17 7 8.4337 -2.1574 9.8681 18 14 9.7065 -4.5975 9.5496 19 1 10.6050 -4.8163 8.3876 20 1 10.5119 -4.1902 10.7288 21 1 8.9802 -5.8557 9.8574 22 7 2.7407 -2.2194 2.4590 23 7 2.3559 -1.9308 1.2659 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 2.0107 0.8937 2.6936 32 1 1.3185 -2.1779 5.3282 33 1 1.9978 -1.1111 6.5805 34 1 1.0162 -0.4250 5.2633 35 1 4.5817 -2.2593 4.2445 36 1 5.3166 -0.7163 5.9725 37 1 4.1239 -1.4806 7.0503 38 1 5.2582 -3.6656 6.7574 39 1 6.4513 -2.9018 5.6796 40 1 7.1543 -1.3987 7.5215 41 1 5.9615 -2.1619 8.5999 42 1 9.0407 -2.0484 10.6167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924943813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:09 Heat of formation + Delta-G solvation = 76.995149 kcal Electronic energy + Delta-G solvation = -19646.485909 eV Core-core repulsion = 16663.132402 eV Total energy + Delta-G solvation = -2983.353506 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.40831 -37.41848 -36.46246 -33.96783 -32.28706 -31.50260 -30.50942 -28.96789 -27.97187 -26.02221 -24.22253 -23.66630 -22.12542 -21.17254 -20.24051 -19.91394 -17.51435 -16.53111 -16.22679 -15.66483 -15.12112 -14.98782 -14.78814 -14.44621 -14.00010 -13.81024 -13.31330 -13.17521 -12.90846 -12.59642 -12.23205 -12.12721 -12.08760 -11.84407 -11.74368 -11.59255 -11.38566 -10.98129 -10.85034 -10.70932 -10.47694 -10.42581 -10.16850 -9.58875 -9.31036 -9.20196 -8.97431 -8.26639 -8.03143 -5.92344 -3.93776 1.45946 2.08629 2.49396 3.39783 3.43083 3.46760 3.84113 4.14759 4.20946 4.33818 4.41817 4.54862 4.64646 4.82339 4.93982 5.00001 5.07989 5.15143 5.25723 5.33574 5.43370 5.43725 5.47067 5.67155 5.76308 5.88204 5.95446 6.03791 6.11123 6.35758 6.44373 6.47049 6.84223 6.90154 7.24944 7.47549 7.76546 7.79185 7.93580 8.08951 8.47836 8.52953 9.13385 9.69738 11.19168 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.042750 B = 0.002756 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.818214 B =10156.517448 C =10286.688428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 C -0.166 4.166 4 N -0.289 5.289 5 C -0.049 4.049 6 C -0.016 4.016 7 C 0.170 3.830 8 H 0.057 0.943 9 C -0.134 4.134 10 N -0.677 5.677 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.023 3.977 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 N -0.246 5.246 23 N -0.091 5.091 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.186 0.814 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.345 0.655 36 H 0.023 0.977 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.013 0.987 41 H 0.016 0.984 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.746 10.842 -20.218 29.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 C -0.224 4.224 4 N -0.083 5.083 5 C -0.200 4.200 6 C -0.155 4.155 7 C 0.058 3.942 8 H 0.074 0.926 9 C -0.192 4.192 10 N -0.310 5.310 11 C -0.070 4.070 12 C -0.145 4.145 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 N -0.112 5.112 23 N -0.070 5.070 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.131 0.869 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.203 0.797 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.164 0.836 36 H 0.041 0.959 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.976 9.231 -20.508 28.791 hybrid contribution 1.125 1.140 0.338 1.637 sum -16.851 10.371 -20.170 28.255 Atomic orbital electron populations 1.22223 0.92442 1.03876 1.03745 1.21678 0.95857 0.93712 0.85183 1.22217 1.02691 0.93280 1.04197 1.47580 1.42575 1.08395 1.09775 1.23181 1.09452 1.01855 0.85539 1.22139 1.05296 0.89949 0.98099 1.19771 0.94652 0.94580 0.85219 0.92553 1.21774 0.95590 1.02019 0.99858 1.60522 1.20042 1.40989 1.09398 1.22204 0.94966 0.97525 0.92276 1.21612 0.95918 0.97057 0.99878 1.19059 0.94115 0.96526 0.91793 1.21250 1.17607 1.03551 1.13147 0.92695 1.25027 0.97547 0.95661 0.96319 1.69957 1.38401 1.26291 1.19131 0.86660 0.81306 0.82339 0.77707 1.20291 1.21374 1.20210 1.75141 1.15743 1.24089 0.96215 1.78343 1.16191 0.96112 1.16324 0.91444 0.91214 0.89745 0.86884 0.91082 0.91117 0.89439 0.79725 0.91748 0.91627 0.93067 0.83562 0.95903 0.91356 0.92423 0.93688 0.96881 0.96575 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.71 9.52 37.16 0.35 -0.36 16 2 C 0.14 0.77 3.85 -67.93 -0.26 0.51 16 3 C -0.17 -0.58 8.83 37.16 0.33 -0.25 16 4 N -0.29 -2.89 3.26 -54.76 -0.18 -3.06 16 5 C -0.05 -0.49 10.62 -17.05 -0.18 -0.67 16 6 C -0.02 -0.21 5.93 -82.78 -0.49 -0.70 16 7 C 0.17 2.28 3.10 -68.87 -0.21 2.07 16 8 H 0.06 0.70 7.80 -51.93 -0.40 0.29 16 9 C -0.13 -1.65 9.40 37.15 0.35 -1.30 16 10 N -0.68 -11.15 6.23 -107.95 -0.67 -11.82 16 11 C 0.06 1.07 5.48 -3.82 -0.02 1.05 16 12 C -0.11 -2.34 5.41 -26.73 -0.14 -2.48 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -15.21 9.11 -34.44 -0.31 -15.53 16 15 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 18 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 N -0.25 -3.87 11.96 33.29 0.40 -3.47 16 23 N -0.09 -1.27 13.17 60.35 0.79 -0.48 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.21 7.17 -51.93 -0.37 -0.16 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.19 1.15 7.30 -52.49 -0.38 0.77 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.82 7.45 -51.93 -0.39 0.44 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.35 5.89 8.09 -39.29 -0.32 5.57 16 36 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 37 H 0.07 1.23 7.43 -51.93 -0.39 0.84 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 347.49 15.07 5.24 5.24 Total: -1.00 -34.13 347.49 -6.82 -40.95 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -7.28 Total: -2.08 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -0.83 Total: -15.67 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 1.08 Total: -45.75 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.13 -6.82 -40.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924943813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.950 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds