Wall clock time and date at job start Mon Mar 30 2020 00:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.35311 * 125.86902 * 274.71990 * 4 2 1 6 6 C 1.35351 * 106.17601 * 179.90232 * 5 4 2 7 7 C 1.50696 * 126.75268 * 180.12576 * 6 5 4 8 8 H 1.09002 * 109.46809 * 325.24079 * 7 6 5 9 9 C 1.52989 * 109.47241 * 85.24376 * 7 6 5 10 10 N 1.46905 * 109.46932 * 205.24700 * 7 6 5 11 11 C 1.46901 * 110.99676 * 154.99951 * 10 7 6 12 12 C 1.53009 * 109.46864 * 179.97438 * 11 10 7 13 13 C 1.52992 * 109.46955 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46852 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00068 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99689 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00355 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99700 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47250 * 59.99990 * 18 16 14 20 20 H 1.48499 * 109.47110 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47161 * 300.00135 * 18 16 14 22 22 N 1.33773 * 106.49488 * 0.34681 * 6 5 4 23 23 N 1.28636 * 108.88619 * 359.78007 * 22 6 5 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.07996 * 126.91285 * 0.02562 * 5 4 2 32 32 H 1.09002 * 109.47462 * 60.00102 * 9 7 6 33 33 H 1.09005 * 109.47302 * 179.97438 * 9 7 6 34 34 H 1.08999 * 109.47381 * 299.99817 * 9 7 6 35 35 H 1.00896 * 111.00299 * 31.04100 * 10 7 6 36 36 H 1.08994 * 109.47414 * 299.99215 * 11 10 7 37 37 H 1.08997 * 109.47366 * 59.99932 * 11 10 7 38 38 H 1.09004 * 109.46693 * 299.99873 * 12 11 10 39 39 H 1.08997 * 109.46970 * 59.99953 * 12 11 10 40 40 H 1.08994 * 109.47484 * 299.99577 * 13 12 11 41 41 H 1.08997 * 109.47204 * 60.00238 * 13 12 11 42 42 H 0.96998 * 119.99982 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1977 -0.1330 2.4159 6 6 2.6558 -1.1217 3.2188 7 6 3.0065 -1.0071 4.6799 8 1 3.4320 -0.0227 4.8752 9 6 1.7440 -1.1936 5.5236 10 7 3.9874 -2.0429 5.0307 11 6 4.7838 -1.6401 6.1976 12 6 5.7914 -2.7419 6.5322 13 6 6.6212 -2.3222 7.7471 14 6 7.6132 -3.4076 8.0771 15 1 7.6485 -4.3067 7.4797 16 6 8.4764 -3.2524 9.1410 17 7 8.4337 -2.1574 9.8681 18 14 9.7065 -4.5975 9.5496 19 1 10.6050 -4.8163 8.3876 20 1 10.5119 -4.1902 10.7288 21 1 8.9802 -5.8557 9.8574 22 7 2.7407 -2.2194 2.4590 23 7 2.3559 -1.9308 1.2659 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 2.0107 0.8937 2.6936 32 1 1.3185 -2.1779 5.3282 33 1 1.9978 -1.1111 6.5805 34 1 1.0162 -0.4250 5.2633 35 1 4.5817 -2.2593 4.2445 36 1 5.3166 -0.7163 5.9725 37 1 4.1239 -1.4806 7.0503 38 1 5.2582 -3.6656 6.7574 39 1 6.4513 -2.9018 5.6796 40 1 7.1543 -1.3987 7.5215 41 1 5.9615 -2.1619 8.5999 42 1 9.0407 -2.0484 10.6167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924943813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:08 Heat of formation + Delta-G solvation = 53.510095 kcal Electronic energy + Delta-G solvation = -19647.504297 eV Core-core repulsion = 16663.132402 eV Total energy + Delta-G solvation = -2984.371895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.27681 -38.50025 -37.25857 -35.80489 -34.02294 -32.24956 -31.90529 -30.19507 -28.27755 -27.82003 -25.28151 -24.68573 -23.68888 -22.08207 -21.75340 -20.97234 -18.49492 -18.20812 -17.34319 -16.84004 -16.54655 -16.03704 -15.91784 -15.50137 -15.27266 -14.86604 -14.37456 -14.11572 -13.76219 -13.55202 -13.41852 -13.30840 -13.17811 -12.98818 -12.76336 -12.68229 -12.47998 -12.44423 -12.22467 -12.15456 -12.04569 -11.76685 -11.48460 -11.35682 -11.10155 -10.98142 -10.53453 -10.16210 -9.31454 -8.18947 -6.29566 0.65239 1.40057 1.43608 1.46088 1.51437 1.51861 2.42048 3.13465 3.13847 3.24620 3.59356 3.80032 3.87805 4.00282 4.19746 4.29669 4.30803 4.32429 4.49768 4.54527 4.61995 4.72606 4.75161 4.76118 4.80951 4.90119 4.94143 5.01690 5.12797 5.15358 5.18527 5.23024 5.25312 5.39914 5.53882 5.73826 5.77689 5.87609 6.14600 6.30643 6.44848 6.86540 7.39094 7.56004 8.92753 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.042750 B = 0.002756 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.818214 B =10156.517448 C =10286.688428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.126 3.874 3 C -0.161 4.161 4 N -0.277 5.277 5 C -0.027 4.027 6 C -0.040 4.040 7 C 0.170 3.830 8 H 0.074 0.926 9 C -0.129 4.129 10 N -0.686 5.686 11 C 0.074 3.926 12 C -0.093 4.093 13 C 0.028 3.972 14 C -0.546 4.546 15 H 0.056 0.944 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.268 1.268 22 N -0.292 5.292 23 N -0.124 5.124 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.112 0.888 31 H 0.227 0.773 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.341 0.659 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.043 0.957 40 H -0.007 1.007 41 H -0.005 1.005 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.462 12.181 -21.288 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 C -0.218 4.218 4 N -0.072 5.072 5 C -0.179 4.179 6 C -0.180 4.180 7 C 0.059 3.941 8 H 0.092 0.908 9 C -0.187 4.187 10 N -0.317 5.317 11 C -0.055 4.055 12 C -0.131 4.131 13 C -0.010 4.010 14 C -0.584 4.584 15 H 0.074 0.926 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.789 3.211 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.193 1.193 22 N -0.157 5.157 23 N -0.102 5.102 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.244 0.756 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.159 0.841 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.011 0.989 41 H 0.013 0.987 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.714 10.559 -21.618 30.480 hybrid contribution 1.282 0.810 0.601 1.631 sum -17.432 11.369 -21.017 29.578 Atomic orbital electron populations 1.22217 0.91137 1.03044 1.05324 1.22151 0.96843 0.94720 0.83653 1.22240 1.01951 0.91630 1.06025 1.48006 1.40737 1.07476 1.10992 1.23701 1.06863 1.02730 0.84651 1.22220 1.07056 0.90541 0.98156 1.19852 0.94067 0.94289 0.85929 0.90826 1.21745 0.95710 1.01916 0.99348 1.60463 1.19926 1.42692 1.08659 1.21910 0.94295 0.95985 0.93304 1.21373 0.96129 0.97967 0.97653 1.18945 0.93822 0.95227 0.92976 1.21679 1.18670 1.04273 1.13738 0.92616 1.25970 0.99570 0.98233 0.96012 1.70080 1.39345 1.28232 1.19587 0.85512 0.78636 0.79141 0.77822 1.19289 1.20511 1.19298 1.75067 1.17391 1.26000 0.97274 1.78250 1.17853 0.98166 1.15963 0.91063 0.93227 0.86942 0.86785 0.89973 0.92238 0.86928 0.75613 0.93753 0.92119 0.90093 0.84109 0.95454 0.91148 0.93243 0.93820 0.98860 0.98677 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.52 71.98 0.69 -0.30 16 2 C 0.13 1.15 3.85 44.99 0.17 1.32 16 3 C -0.16 -0.59 8.83 71.98 0.64 0.04 16 4 N -0.28 -5.15 3.26 -327.18 -1.07 -6.21 16 5 C -0.03 -0.47 10.62 83.49 0.89 0.41 16 6 C -0.04 -1.02 5.93 41.60 0.25 -0.77 16 7 C 0.17 4.38 3.10 44.16 0.14 4.52 16 8 H 0.07 1.66 7.80 -2.39 -0.02 1.64 16 9 C -0.13 -3.02 9.40 71.98 0.68 -2.34 16 10 N -0.69 -22.59 6.23 -495.45 -3.08 -25.67 16 11 C 0.07 2.69 5.48 86.31 0.47 3.16 16 12 C -0.09 -4.17 5.41 30.59 0.17 -4.01 16 13 C 0.03 1.54 4.97 29.85 0.15 1.69 16 14 C -0.55 -32.60 9.11 25.60 0.23 -32.37 16 15 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 16 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 17 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 18 Si 0.96 45.80 29.54 68.60 2.03 47.83 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 22 N -0.29 -9.32 11.96 -48.60 -0.58 -9.90 16 23 N -0.12 -3.47 13.17 37.02 0.49 -2.99 16 24 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 27 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 0.15 7.17 -2.39 -0.02 0.13 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.11 -0.11 8.14 -2.39 -0.02 -0.12 16 31 H 0.23 1.81 7.30 -2.91 -0.02 1.79 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.46 7.45 -2.38 -0.02 1.44 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.34 11.78 8.09 -89.70 -0.73 11.06 16 36 H 0.03 0.97 8.05 -2.39 -0.02 0.95 16 37 H 0.07 2.53 7.43 -2.39 -0.02 2.51 16 38 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 40 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -75.85 347.49 3.25 -72.60 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.26 Total: 10.27 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 4.92 Total: -28.19 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -3.96 Total: -102.51 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -75.85 3.25 -72.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924943813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.112 kcal (2) G-P(sol) polarization free energy of solvation -75.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds