Wall clock time and date at job start Mon Mar 30 2020 00:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46614 * 2 1 4 4 N 1.46496 * 109.47073 * 119.99772 * 2 1 3 5 5 C 1.35313 * 125.86774 * 275.00282 * 4 2 1 6 6 C 1.35355 * 106.17637 * 180.02562 * 5 4 2 7 7 C 1.50694 * 126.75481 * 179.73261 * 6 5 4 8 8 H 1.09008 * 109.46540 * 35.00841 * 7 6 5 9 9 C 1.52995 * 109.47623 * 275.00870 * 7 6 5 10 10 N 1.46900 * 109.47444 * 155.00306 * 7 6 5 11 11 C 1.46900 * 111.00274 * 205.00356 * 10 7 6 12 12 C 1.53003 * 109.46974 * 179.97438 * 11 10 7 13 13 C 1.53001 * 109.47072 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47039 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00134 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99980 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00031 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99623 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46923 * 90.00053 * 18 16 14 20 20 H 1.48500 * 109.46809 * 209.99875 * 18 16 14 21 21 H 1.48494 * 109.47247 * 329.99872 * 18 16 14 22 22 N 1.33770 * 106.49598 * 0.02562 * 6 5 4 23 23 N 1.28636 * 108.88653 * 359.97438 * 22 6 5 24 24 H 1.09001 * 109.47277 * 300.00330 * 1 2 3 25 25 H 1.08998 * 109.47316 * 60.00437 * 1 2 3 26 26 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47082 * 240.00188 * 2 1 3 28 28 H 1.08992 * 109.47072 * 60.00151 * 3 2 1 29 29 H 1.09005 * 109.46600 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47221 * 299.99345 * 3 2 1 31 31 H 1.07998 * 126.91441 * 0.05908 * 5 4 2 32 32 H 1.09002 * 109.46717 * 299.99464 * 9 7 6 33 33 H 1.08999 * 109.47263 * 59.99416 * 9 7 6 34 34 H 1.09002 * 109.47683 * 180.02562 * 9 7 6 35 35 H 1.00905 * 110.99462 * 328.95461 * 10 7 6 36 36 H 1.08996 * 109.47045 * 300.00183 * 11 10 7 37 37 H 1.09001 * 109.46864 * 60.00236 * 11 10 7 38 38 H 1.08998 * 109.47082 * 300.00060 * 12 11 10 39 39 H 1.09005 * 109.46988 * 60.00025 * 12 11 10 40 40 H 1.09003 * 109.46469 * 300.00261 * 13 12 11 41 41 H 1.08997 * 109.47287 * 59.99662 * 13 12 11 42 42 H 0.96996 * 120.00007 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1925 -0.1342 2.4173 6 6 2.6553 -1.1216 3.2190 7 6 3.0109 -1.0057 4.6788 8 1 2.3322 -0.3037 5.1634 9 6 4.4489 -0.5012 4.8150 10 7 2.8915 -2.3229 5.3181 11 6 2.6409 -2.1879 6.7593 12 6 2.5221 -3.5774 7.3886 13 6 2.2605 -3.4369 8.8895 14 6 2.1441 -4.8055 9.5094 15 1 2.2461 -5.6873 8.8944 16 6 1.9074 -4.9318 10.8619 17 7 1.8053 -6.1262 11.4028 18 14 1.7317 -3.4064 11.9258 19 1 0.3059 -2.9934 11.9671 20 1 2.2003 -3.7066 13.3025 21 1 2.5493 -2.3069 11.3534 22 7 2.7411 -2.2191 2.4591 23 7 2.3564 -1.9306 1.2660 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 2.0003 0.8913 2.6962 32 1 5.1276 -1.2031 4.3304 33 1 4.5375 0.4762 4.3407 34 1 4.7063 -0.4177 5.8709 35 1 2.1720 -2.8753 4.8762 36 1 3.4667 -1.6481 7.2226 37 1 1.7133 -1.6376 6.9167 38 1 1.6961 -4.1168 6.9251 39 1 3.4495 -4.1281 7.2310 40 1 3.0863 -2.8973 9.3532 41 1 1.3330 -2.8863 9.0466 42 1 1.6392 -6.2151 12.3543 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924943814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:11 Heat of formation + Delta-G solvation = 80.713821 kcal Electronic energy + Delta-G solvation = -19704.489887 eV Core-core repulsion = 16721.297634 eV Total energy + Delta-G solvation = -2983.192253 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.44454 -37.48431 -36.52243 -34.06391 -32.29611 -31.53860 -30.72458 -29.16679 -28.00387 -26.35092 -24.25420 -23.68203 -21.94758 -21.20621 -20.31445 -19.88239 -17.55226 -16.64212 -16.56301 -15.72395 -15.28551 -15.08705 -14.72676 -14.29549 -13.99052 -13.91637 -13.38122 -13.23535 -12.96771 -12.58672 -12.49327 -12.26421 -12.13908 -11.94646 -11.85965 -11.71080 -11.55739 -11.11110 -10.88939 -10.84806 -10.64062 -10.20784 -9.87553 -9.64571 -9.52328 -9.27483 -9.08469 -8.46528 -8.11765 -5.96615 -3.93796 1.42338 2.05424 2.45473 3.35298 3.42318 3.46665 3.81134 4.11398 4.17014 4.29684 4.37412 4.51662 4.59832 4.79888 4.91231 4.97889 5.05893 5.09145 5.20281 5.29165 5.36260 5.37253 5.46578 5.62750 5.69921 5.76355 5.85454 5.92591 6.05126 6.24909 6.35868 6.40884 6.66464 6.69614 7.01569 7.32703 7.46699 7.53723 7.71493 7.88570 8.44317 8.63841 9.10018 9.66071 11.17133 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.037432 B = 0.002933 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.853161 B = 9545.404212 C = 9661.630620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.137 3.863 3 C -0.165 4.165 4 N -0.288 5.288 5 C -0.049 4.049 6 C -0.017 4.017 7 C 0.170 3.830 8 H 0.056 0.944 9 C -0.134 4.134 10 N -0.676 5.676 11 C 0.056 3.944 12 C -0.099 4.099 13 C -0.012 4.012 14 C -0.517 4.517 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.265 1.265 22 N -0.245 5.245 23 N -0.090 5.090 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.185 0.815 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.347 0.653 36 H 0.068 0.932 37 H 0.022 0.978 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.016 0.984 41 H 0.008 0.992 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 20.509 -24.378 31.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.036 3.964 3 C -0.223 4.223 4 N -0.083 5.083 5 C -0.200 4.200 6 C -0.156 4.156 7 C 0.058 3.942 8 H 0.074 0.926 9 C -0.193 4.193 10 N -0.309 5.309 11 C -0.072 4.072 12 C -0.137 4.137 13 C -0.050 4.050 14 C -0.555 4.555 15 H 0.090 0.910 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.190 1.190 22 N -0.111 5.111 23 N -0.069 5.069 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.131 0.869 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.203 0.797 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.166 0.834 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.034 0.966 41 H 0.026 0.974 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.256 19.006 -24.948 31.364 hybrid contribution -1.276 2.103 1.118 2.702 sum -1.531 21.109 -23.830 31.872 Atomic orbital electron populations 1.22231 0.92395 1.03973 1.03773 1.21686 0.95905 0.93681 0.85160 1.22214 1.02603 0.93305 1.04211 1.47589 1.42540 1.08413 1.09748 1.23174 1.09257 1.01940 0.85655 1.22115 1.04815 0.90234 0.98423 1.19765 0.97306 0.92279 0.84827 0.92599 1.21779 0.95291 0.99818 1.02381 1.60491 1.53605 1.13196 1.03574 1.22228 0.98775 0.99563 0.86651 1.21434 1.01611 0.93711 0.96971 1.19543 0.95834 0.97774 0.91888 1.21180 1.48503 0.92141 0.93667 0.90985 1.25053 0.94846 0.95753 0.98036 1.69922 1.50289 1.22198 1.12093 0.86760 0.78624 0.84133 0.79650 1.20449 1.21474 1.18992 1.75149 1.15494 1.24265 0.96215 1.78354 1.16143 0.96026 1.16339 0.91442 0.89714 0.91145 0.86856 0.91104 0.91159 0.89426 0.79747 0.91656 0.93022 0.91708 0.83379 0.91361 0.95939 0.93065 0.91782 0.96620 0.97369 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 9.52 37.16 0.35 -0.38 16 2 C 0.14 0.74 3.85 -67.93 -0.26 0.48 16 3 C -0.17 -0.50 8.83 37.16 0.33 -0.17 16 4 N -0.29 -2.80 3.25 -54.76 -0.18 -2.97 16 5 C -0.05 -0.47 10.62 -17.05 -0.18 -0.65 16 6 C -0.02 -0.22 5.93 -82.78 -0.49 -0.71 16 7 C 0.17 2.18 3.10 -68.87 -0.21 1.96 16 8 H 0.06 0.65 7.80 -51.92 -0.40 0.24 16 9 C -0.13 -1.57 9.40 37.15 0.35 -1.22 16 10 N -0.68 -10.65 6.23 -107.95 -0.67 -11.32 16 11 C 0.06 0.96 5.48 -3.82 -0.02 0.94 16 12 C -0.10 -2.08 5.41 -26.73 -0.14 -2.23 16 13 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 14 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 15 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -28.75 13.96 55.43 0.77 -27.98 16 18 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 22 N -0.24 -3.78 11.97 33.29 0.40 -3.38 16 23 N -0.09 -1.23 13.17 60.35 0.79 -0.44 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.19 7.17 -51.93 -0.37 -0.19 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.19 1.07 7.30 -52.49 -0.38 0.68 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.76 7.45 -51.93 -0.39 0.37 16 35 H 0.35 5.70 8.10 -39.29 -0.32 5.38 16 36 H 0.07 1.13 7.43 -51.93 -0.39 0.74 16 37 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 41 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 42 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 LS Contribution 343.92 15.07 5.18 5.18 Total: -1.00 -34.71 343.92 -6.45 -41.16 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.25 Total: -1.61 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.82 Total: -16.22 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 1.12 Total: -46.09 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.71 -6.45 -41.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924943814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.870 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds