Wall clock time and date at job start Mon Mar 30 2020 00:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46614 * 2 1 4 4 N 1.46496 * 109.47073 * 119.99772 * 2 1 3 5 5 C 1.35313 * 125.86774 * 275.00282 * 4 2 1 6 6 C 1.35355 * 106.17637 * 180.02562 * 5 4 2 7 7 C 1.50694 * 126.75481 * 179.73261 * 6 5 4 8 8 H 1.09008 * 109.46540 * 35.00841 * 7 6 5 9 9 C 1.52995 * 109.47623 * 275.00870 * 7 6 5 10 10 N 1.46900 * 109.47444 * 155.00306 * 7 6 5 11 11 C 1.46900 * 111.00274 * 205.00356 * 10 7 6 12 12 C 1.53003 * 109.46974 * 179.97438 * 11 10 7 13 13 C 1.53001 * 109.47072 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47039 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00134 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99980 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00031 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99623 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46923 * 90.00053 * 18 16 14 20 20 H 1.48500 * 109.46809 * 209.99875 * 18 16 14 21 21 H 1.48494 * 109.47247 * 329.99872 * 18 16 14 22 22 N 1.33770 * 106.49598 * 0.02562 * 6 5 4 23 23 N 1.28636 * 108.88653 * 359.97438 * 22 6 5 24 24 H 1.09001 * 109.47277 * 300.00330 * 1 2 3 25 25 H 1.08998 * 109.47316 * 60.00437 * 1 2 3 26 26 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47082 * 240.00188 * 2 1 3 28 28 H 1.08992 * 109.47072 * 60.00151 * 3 2 1 29 29 H 1.09005 * 109.46600 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47221 * 299.99345 * 3 2 1 31 31 H 1.07998 * 126.91441 * 0.05908 * 5 4 2 32 32 H 1.09002 * 109.46717 * 299.99464 * 9 7 6 33 33 H 1.08999 * 109.47263 * 59.99416 * 9 7 6 34 34 H 1.09002 * 109.47683 * 180.02562 * 9 7 6 35 35 H 1.00905 * 110.99462 * 328.95461 * 10 7 6 36 36 H 1.08996 * 109.47045 * 300.00183 * 11 10 7 37 37 H 1.09001 * 109.46864 * 60.00236 * 11 10 7 38 38 H 1.08998 * 109.47082 * 300.00060 * 12 11 10 39 39 H 1.09005 * 109.46988 * 60.00025 * 12 11 10 40 40 H 1.09003 * 109.46469 * 300.00261 * 13 12 11 41 41 H 1.08997 * 109.47287 * 59.99662 * 13 12 11 42 42 H 0.96996 * 120.00007 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1925 -0.1342 2.4173 6 6 2.6553 -1.1216 3.2190 7 6 3.0109 -1.0057 4.6788 8 1 2.3322 -0.3037 5.1634 9 6 4.4489 -0.5012 4.8150 10 7 2.8915 -2.3229 5.3181 11 6 2.6409 -2.1879 6.7593 12 6 2.5221 -3.5774 7.3886 13 6 2.2605 -3.4369 8.8895 14 6 2.1441 -4.8055 9.5094 15 1 2.2461 -5.6873 8.8944 16 6 1.9074 -4.9318 10.8619 17 7 1.8053 -6.1262 11.4028 18 14 1.7317 -3.4064 11.9258 19 1 0.3059 -2.9934 11.9671 20 1 2.2003 -3.7066 13.3025 21 1 2.5493 -2.3069 11.3534 22 7 2.7411 -2.2191 2.4591 23 7 2.3564 -1.9306 1.2660 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 2.0003 0.8913 2.6962 32 1 5.1276 -1.2031 4.3304 33 1 4.5375 0.4762 4.3407 34 1 4.7063 -0.4177 5.8709 35 1 2.1720 -2.8753 4.8762 36 1 3.4667 -1.6481 7.2226 37 1 1.7133 -1.6376 6.9167 38 1 1.6961 -4.1168 6.9251 39 1 3.4495 -4.1281 7.2310 40 1 3.0863 -2.8973 9.3532 41 1 1.3330 -2.8863 9.0466 42 1 1.6392 -6.2151 12.3543 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924943814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:10 Heat of formation + Delta-G solvation = 55.708267 kcal Electronic energy + Delta-G solvation = -19705.574209 eV Core-core repulsion = 16721.297634 eV Total energy + Delta-G solvation = -2984.276575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.27289 -38.50224 -37.26551 -35.79181 -34.10397 -32.27550 -32.08211 -30.29281 -28.28789 -28.03380 -25.17059 -24.66087 -23.46263 -22.06027 -21.73047 -20.96352 -18.90636 -18.20304 -17.33445 -16.85315 -16.44066 -16.03710 -15.87922 -15.49037 -15.27372 -14.93213 -14.59026 -14.17515 -13.88102 -13.60053 -13.52150 -13.30524 -13.16561 -13.02049 -12.73840 -12.65229 -12.50067 -12.45418 -12.16871 -12.01138 -11.82107 -11.74648 -11.46586 -11.42170 -11.24400 -10.98941 -10.74606 -10.15755 -9.29053 -8.27483 -6.32270 0.65656 1.37413 1.40667 1.46508 1.52552 1.53260 2.38943 3.07503 3.13628 3.25567 3.59680 3.79595 3.88060 4.00010 4.20371 4.26171 4.30399 4.32711 4.49139 4.54000 4.61433 4.70102 4.74083 4.76014 4.80258 4.88643 4.92813 4.97453 5.06777 5.12361 5.14824 5.16574 5.22829 5.41175 5.55202 5.63790 5.68702 5.74028 6.19592 6.32480 6.44469 6.76297 7.32060 7.56621 8.89944 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.037432 B = 0.002933 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.853161 B = 9545.404212 C = 9661.630620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 C -0.159 4.159 4 N -0.278 5.278 5 C -0.027 4.027 6 C -0.041 4.041 7 C 0.171 3.829 8 H 0.078 0.922 9 C -0.129 4.129 10 N -0.690 5.690 11 C 0.071 3.929 12 C -0.092 4.092 13 C -0.007 4.007 14 C -0.536 4.536 15 H 0.024 0.976 16 C -0.002 4.002 17 N -0.956 5.956 18 Si 0.959 3.041 19 H -0.265 1.265 20 H -0.284 1.284 21 H -0.241 1.241 22 N -0.294 5.294 23 N -0.126 5.126 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.047 0.953 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.229 0.771 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.340 0.660 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.039 0.961 39 H 0.044 0.956 40 H 0.024 0.976 41 H 0.021 0.979 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 25.129 -24.861 35.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 C -0.217 4.217 4 N -0.072 5.072 5 C -0.179 4.179 6 C -0.180 4.180 7 C 0.060 3.940 8 H 0.096 0.904 9 C -0.188 4.188 10 N -0.322 5.322 11 C -0.057 4.057 12 C -0.130 4.130 13 C -0.045 4.045 14 C -0.574 4.574 15 H 0.043 0.957 16 C -0.198 4.198 17 N -0.596 5.596 18 Si 0.781 3.219 19 H -0.190 1.190 20 H -0.210 1.210 21 H -0.164 1.164 22 N -0.159 5.159 23 N -0.104 5.104 24 H 0.088 0.912 25 H 0.131 0.869 26 H 0.066 0.934 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.245 0.755 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.158 0.842 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.040 0.960 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.855 23.624 -25.488 34.763 hybrid contribution -1.107 0.604 1.144 1.703 sum -1.962 24.228 -24.343 34.401 Atomic orbital electron populations 1.22226 0.91434 1.02937 1.05278 1.22147 0.96622 0.94895 0.83691 1.22233 1.02097 0.91389 1.05991 1.48013 1.40718 1.07484 1.11022 1.23721 1.06613 1.02889 0.84717 1.22278 1.06384 0.90704 0.98676 1.19869 0.98371 0.90891 0.84906 0.90389 1.21755 0.94052 1.00624 1.02335 1.60440 1.53457 1.15385 1.02928 1.21970 0.99880 0.96526 0.87356 1.21268 1.00128 0.96371 0.95244 1.19473 0.96583 0.94767 0.93715 1.21548 1.48680 0.93243 0.93941 0.95741 1.26149 0.94162 0.99809 0.99701 1.70093 1.51535 1.25215 1.12796 0.85531 0.79587 0.79572 0.77175 1.18997 1.21009 1.16436 1.75077 1.17185 1.26341 0.97288 1.78264 1.17967 0.98144 1.16053 0.91184 0.86929 0.93429 0.86782 0.89980 0.91908 0.87013 0.75498 0.94030 0.90125 0.91761 0.84195 0.90351 0.94521 0.94242 0.93681 0.95743 0.96038 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.52 71.98 0.69 -0.37 16 2 C 0.13 1.08 3.85 45.00 0.17 1.26 16 3 C -0.16 -0.39 8.83 71.98 0.64 0.24 16 4 N -0.28 -4.98 3.25 -327.16 -1.06 -6.04 16 5 C -0.03 -0.44 10.62 83.49 0.89 0.45 16 6 C -0.04 -0.99 5.93 41.60 0.25 -0.74 16 7 C 0.17 4.03 3.10 44.17 0.14 4.17 16 8 H 0.08 1.51 7.80 -2.38 -0.02 1.49 16 9 C -0.13 -2.75 9.40 71.98 0.68 -2.08 16 10 N -0.69 -21.36 6.23 -495.45 -3.09 -24.44 16 11 C 0.07 2.31 5.48 86.30 0.47 2.79 16 12 C -0.09 -3.89 5.41 30.60 0.17 -3.72 16 13 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 14 C -0.54 -32.64 9.66 25.60 0.25 -32.40 16 15 H 0.02 1.65 7.99 -2.91 -0.02 1.63 16 16 C 0.00 -0.13 5.47 84.66 0.46 0.33 16 17 N -0.96 -62.28 13.96 21.45 0.30 -61.98 16 18 Si 0.96 45.17 27.47 68.60 1.88 47.06 16 19 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 22 N -0.29 -9.21 11.97 -48.60 -0.58 -9.80 16 23 N -0.13 -3.49 13.17 37.02 0.49 -3.00 16 24 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 0.05 7.17 -2.39 -0.02 0.03 16 29 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.23 1.49 7.30 -2.91 -0.02 1.47 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.36 7.45 -2.39 -0.02 1.34 16 35 H 0.34 11.32 8.10 -89.69 -0.73 10.59 16 36 H 0.08 2.40 7.43 -2.39 -0.02 2.38 16 37 H 0.04 1.09 8.06 -2.39 -0.02 1.07 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.02 1.14 7.20 -2.39 -0.02 1.13 16 41 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 42 H 0.27 16.07 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -79.47 343.92 3.05 -76.42 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.20 Total: 12.10 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 4.91 Total: -30.32 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -3.94 Total: -105.25 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.06 kcal Total: -79.47 3.05 -76.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924943814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.124 kcal (2) G-P(sol) polarization free energy of solvation -79.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds