Wall clock time and date at job start Mon Mar 30 2020 01:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.53981 * 2 1 4 4 C 1.54967 * 110.52814 * 122.62924 * 2 1 3 5 5 C 1.54895 * 102.77722 * 156.56946 * 4 2 1 6 6 C 1.54264 * 104.19288 * 322.08561 * 5 4 2 7 7 H 1.09004 * 110.07224 * 264.30232 * 6 5 4 8 8 C 1.53005 * 110.03251 * 142.89569 * 6 5 4 9 9 C 1.53875 * 106.60305 * 23.60713 * 6 5 4 10 10 N 1.46906 * 110.03192 * 119.28235 * 9 6 5 11 11 C 1.46898 * 110.99919 * 155.69264 * 10 9 6 12 12 C 1.53042 * 109.46178 * 155.00192 * 11 10 9 13 13 C 1.53191 * 109.31396 * 181.37336 * 12 11 10 14 14 N 1.46933 * 108.77420 * 305.36563 * 13 12 11 15 15 C 1.36932 * 120.62622 * 233.58342 * 14 13 12 16 16 H 1.08001 * 119.99757 * 152.32970 * 15 14 13 17 17 C 1.38805 * 120.00405 * 332.05573 * 15 14 13 18 18 N 1.31615 * 120.00232 * 343.03614 * 17 15 14 19 19 Si 1.86805 * 120.00196 * 163.03412 * 17 15 14 20 20 H 1.48495 * 109.47234 * 89.99846 * 19 17 15 21 21 H 1.48496 * 109.47082 * 209.99942 * 19 17 15 22 22 H 1.48504 * 109.46748 * 330.00086 * 19 17 15 23 23 C 1.46927 * 118.73750 * 53.85956 * 14 13 12 24 24 C 1.53037 * 109.44965 * 275.06552 * 11 10 9 25 25 H 1.09003 * 109.47043 * 182.61133 * 1 2 3 26 26 H 1.09001 * 109.47343 * 302.61435 * 1 2 3 27 27 H 1.09002 * 109.46626 * 62.61484 * 1 2 3 28 28 H 1.08994 * 110.71896 * 38.25614 * 4 2 1 29 29 H 1.09001 * 110.76658 * 274.90456 * 4 2 1 30 30 H 1.08992 * 110.48863 * 203.40376 * 5 4 2 31 31 H 1.09003 * 110.59705 * 80.81155 * 5 4 2 32 32 H 1.09003 * 109.46968 * 302.82535 * 8 6 5 33 33 H 1.08996 * 109.47043 * 62.82914 * 8 6 5 34 34 H 1.08997 * 109.47040 * 182.83153 * 8 6 5 35 35 H 1.09000 * 110.03682 * 240.66783 * 9 6 5 36 36 H 1.00893 * 111.00174 * 279.64758 * 10 9 6 37 37 H 1.09006 * 109.46129 * 35.02684 * 11 10 9 38 38 H 1.08997 * 109.49426 * 61.41967 * 12 11 10 39 39 H 1.08999 * 109.49411 * 301.32539 * 12 11 10 40 40 H 1.09002 * 109.58496 * 185.57993 * 13 12 11 41 41 H 1.08998 * 109.58508 * 65.15045 * 13 12 11 42 42 H 0.96999 * 120.00577 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.58278 * 65.92606 * 23 14 13 44 44 H 1.08996 * 109.58355 * 186.34913 * 23 14 13 45 45 H 1.08998 * 109.49932 * 298.57322 * 24 11 10 46 46 H 1.08995 * 109.50298 * 58.67115 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0734 -0.7825 1.2222 5 6 3.4916 -1.1993 0.7592 6 6 3.3164 -1.5414 -0.7348 7 1 3.1686 -2.6143 -0.8581 8 6 4.5463 -1.0880 -1.5240 9 6 2.0699 -0.7789 -1.2172 10 7 2.4356 0.1553 -2.2904 11 6 1.2778 0.4570 -3.1428 12 6 1.4773 1.8198 -3.8100 13 6 0.2530 2.1465 -4.6709 14 7 0.0281 1.0409 -5.6121 15 6 -0.0724 1.2790 -6.9568 16 1 0.2058 0.5111 -7.6635 17 6 -0.5374 2.5052 -7.4117 18 7 -1.1875 3.3067 -6.5949 19 14 -0.2403 3.0180 -9.1833 20 1 -1.3705 2.5561 -10.0285 21 1 -0.1374 4.4974 -9.2597 22 1 1.0232 2.4080 -9.6699 23 6 -0.0930 -0.3243 -5.0825 24 6 1.1407 -0.6239 -4.2175 25 1 -0.3633 -1.0266 0.0468 26 1 -0.3634 0.5539 0.8656 27 1 -0.3633 0.4727 -0.9125 28 1 1.4589 -1.6602 1.4224 29 1 2.1273 -0.1390 2.1003 30 1 3.8322 -2.0738 1.3134 31 1 4.1930 -0.3740 0.8818 32 1 4.7000 -0.0192 -1.3749 33 1 5.4231 -1.6334 -1.1753 34 1 4.3917 -1.2883 -2.5842 35 1 1.3173 -1.4816 -1.5746 36 1 2.8367 1.0006 -1.9130 37 1 0.3743 0.4798 -2.5334 38 1 2.3669 1.7901 -4.4391 39 1 1.5982 2.5857 -3.0439 40 1 0.4315 3.0678 -5.2254 41 1 -0.6218 2.2658 -4.0317 42 1 -1.5127 4.1635 -6.9128 43 1 -0.9954 -0.4022 -4.4761 44 1 -0.1429 -1.0336 -5.9085 45 1 2.0335 -0.6306 -4.8427 46 1 1.0221 -1.5972 -3.7415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925004491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:11 Heat of formation + Delta-G solvation = 0.280105 kcal Electronic energy + Delta-G solvation = -21726.774429 eV Core-core repulsion = 18843.634652 eV Total energy + Delta-G solvation = -2883.139777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.55451 -37.32109 -34.20711 -32.53900 -31.81556 -30.06225 -29.33236 -28.20405 -25.64234 -24.28915 -23.73486 -22.14081 -21.23284 -20.42397 -19.17760 -18.76838 -16.72726 -15.90589 -15.49943 -14.78867 -14.66309 -13.95464 -13.78684 -13.44115 -13.41201 -13.26088 -12.98629 -12.71988 -12.59680 -12.26152 -12.16454 -11.66404 -11.47530 -11.30589 -11.01202 -10.81754 -10.78023 -10.66737 -10.65043 -10.58418 -10.49424 -10.31518 -10.24547 -10.11270 -9.86906 -9.52140 -9.35198 -8.42427 -7.92554 -6.61803 -5.74793 -3.16252 3.40067 3.46994 3.50116 4.38860 4.52404 4.53905 4.62929 4.87717 5.16552 5.30197 5.40964 5.43019 5.46652 5.49453 5.51923 5.55506 5.62603 5.71770 5.74350 5.81406 5.89697 5.91586 5.94532 6.01178 6.08580 6.17587 6.22889 6.29726 6.37088 6.39268 6.42579 6.57544 6.61105 6.67077 6.72467 6.74914 6.89719 7.11113 7.42794 7.51430 7.70608 7.76282 7.84284 8.49850 9.26180 9.90093 10.47197 11.33805 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.035716 B = 0.004420 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.782948 B = 6332.625194 C = 6615.610564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 H 0.071 0.929 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.088 4.088 7 H 0.066 0.934 8 C -0.121 4.121 9 C 0.091 3.909 10 N -0.676 5.676 11 C 0.092 3.908 12 C -0.140 4.140 13 C 0.175 3.825 14 N -0.591 5.591 15 C -0.249 4.249 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.905 5.905 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.144 3.856 24 C -0.115 4.115 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.335 0.665 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.014 0.986 42 H 0.253 0.747 43 H 0.013 0.987 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.594 -7.432 14.798 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 H 0.090 0.910 4 C -0.156 4.156 5 C -0.159 4.159 6 C -0.107 4.107 7 H 0.085 0.915 8 C -0.179 4.179 9 C -0.020 4.020 10 N -0.306 5.306 11 C -0.017 4.017 12 C -0.180 4.180 13 C 0.048 3.952 14 N -0.314 5.314 15 C -0.379 4.379 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.550 5.550 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.017 3.983 24 C -0.155 4.155 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.153 0.847 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.106 0.894 41 H 0.032 0.968 42 H 0.063 0.937 43 H 0.031 0.969 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.761 -7.759 14.300 18.026 hybrid contribution -0.503 0.947 -0.208 1.092 sum 7.257 -6.812 14.092 17.253 Atomic orbital electron populations 1.21900 0.94942 1.01690 1.01929 1.22762 0.95958 0.99373 0.96281 0.91023 1.22515 0.96351 0.99590 0.97188 1.22465 0.96816 1.00737 0.95917 1.21757 0.95749 0.99192 0.93977 0.91547 1.21520 0.94987 1.00397 1.00972 1.22293 0.95681 0.94583 0.89396 1.60821 1.30975 1.17658 1.21154 1.21545 0.90798 0.96049 0.93291 1.22382 1.02352 0.94197 0.99044 1.20724 0.91178 0.92994 0.90302 1.44052 1.83144 1.00867 1.03330 1.19192 1.36629 0.99856 0.82241 0.91760 1.25024 0.97925 0.99218 0.97548 1.70029 1.38623 1.11317 1.34999 0.86321 0.78131 0.77586 0.84906 1.21458 1.21602 1.20474 1.21015 0.93582 0.88340 0.95329 1.22063 1.00313 0.96163 0.96960 0.92733 0.93032 0.92024 0.91622 0.92080 0.92170 0.91735 0.93024 0.94633 0.91449 0.90401 0.84655 0.94194 0.91988 0.93882 0.89437 0.96771 0.93728 0.96893 0.92874 0.91915 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.98 37.16 0.33 -1.36 16 2 C -0.12 -1.37 3.04 -88.92 -0.27 -1.64 16 3 H 0.07 0.83 7.57 -51.93 -0.39 0.44 16 4 C -0.12 -1.13 6.33 -24.69 -0.16 -1.29 16 5 C -0.12 -1.15 6.36 -25.07 -0.16 -1.31 16 6 C -0.09 -0.95 3.50 -89.50 -0.31 -1.26 16 7 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 8 C -0.12 -1.36 8.06 37.16 0.30 -1.06 16 9 C 0.09 1.12 2.61 -66.59 -0.17 0.94 16 10 N -0.68 -9.43 4.26 -98.52 -0.42 -9.85 16 11 C 0.09 1.55 2.29 -67.67 -0.16 1.40 16 12 C -0.14 -2.69 5.36 -26.61 -0.14 -2.83 16 13 C 0.17 4.20 5.30 -3.71 -0.02 4.18 16 14 N -0.59 -15.06 2.99 -172.06 -0.51 -15.58 16 15 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 16 H 0.06 1.77 7.89 -52.49 -0.41 1.35 16 17 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 18 N -0.90 -26.52 11.18 55.49 0.62 -25.90 16 19 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.14 3.12 6.54 -3.49 -0.02 3.09 16 24 C -0.12 -2.10 5.59 -26.39 -0.15 -2.25 16 25 H 0.05 0.60 8.12 -51.93 -0.42 0.17 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.83 5.96 -51.93 -0.31 0.52 16 28 H 0.07 0.61 8.04 -51.93 -0.42 0.19 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.61 7.83 -51.93 -0.41 0.20 16 32 H 0.05 0.58 7.46 -51.93 -0.39 0.20 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.87 7.81 -51.93 -0.41 0.46 16 35 H 0.08 1.06 6.85 -51.93 -0.36 0.70 16 36 H 0.33 4.50 7.25 -39.30 -0.28 4.22 16 37 H 0.04 0.70 5.44 -51.93 -0.28 0.42 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.04 0.72 7.44 -51.93 -0.39 0.34 16 LS Contribution 339.14 15.07 5.11 5.11 Total: -1.00 -28.36 339.14 -9.94 -38.30 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.55 Total: 1.58 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -1.16 Total: -10.55 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.31 Total: -51.33 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.36 -9.94 -38.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925004491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.583 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds