Wall clock time and date at job start Mon Mar 30 2020 01:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.53981 * 2 1 4 4 C 1.54967 * 110.52814 * 122.62924 * 2 1 3 5 5 C 1.54895 * 102.77722 * 156.56946 * 4 2 1 6 6 C 1.54264 * 104.19288 * 322.08561 * 5 4 2 7 7 H 1.09004 * 110.07224 * 264.30232 * 6 5 4 8 8 C 1.53005 * 110.03251 * 142.89569 * 6 5 4 9 9 C 1.53875 * 106.60305 * 23.60713 * 6 5 4 10 10 N 1.46906 * 110.03192 * 119.28235 * 9 6 5 11 11 C 1.46898 * 110.99919 * 155.69264 * 10 9 6 12 12 C 1.53042 * 109.46178 * 155.00192 * 11 10 9 13 13 C 1.53191 * 109.31396 * 181.37336 * 12 11 10 14 14 N 1.46933 * 108.77420 * 305.36563 * 13 12 11 15 15 C 1.36932 * 120.62622 * 233.58342 * 14 13 12 16 16 H 1.08001 * 119.99757 * 152.32970 * 15 14 13 17 17 C 1.38805 * 120.00405 * 332.05573 * 15 14 13 18 18 N 1.31615 * 120.00232 * 343.03614 * 17 15 14 19 19 Si 1.86805 * 120.00196 * 163.03412 * 17 15 14 20 20 H 1.48495 * 109.47234 * 89.99846 * 19 17 15 21 21 H 1.48496 * 109.47082 * 209.99942 * 19 17 15 22 22 H 1.48504 * 109.46748 * 330.00086 * 19 17 15 23 23 C 1.46927 * 118.73750 * 53.85956 * 14 13 12 24 24 C 1.53037 * 109.44965 * 275.06552 * 11 10 9 25 25 H 1.09003 * 109.47043 * 182.61133 * 1 2 3 26 26 H 1.09001 * 109.47343 * 302.61435 * 1 2 3 27 27 H 1.09002 * 109.46626 * 62.61484 * 1 2 3 28 28 H 1.08994 * 110.71896 * 38.25614 * 4 2 1 29 29 H 1.09001 * 110.76658 * 274.90456 * 4 2 1 30 30 H 1.08992 * 110.48863 * 203.40376 * 5 4 2 31 31 H 1.09003 * 110.59705 * 80.81155 * 5 4 2 32 32 H 1.09003 * 109.46968 * 302.82535 * 8 6 5 33 33 H 1.08996 * 109.47043 * 62.82914 * 8 6 5 34 34 H 1.08997 * 109.47040 * 182.83153 * 8 6 5 35 35 H 1.09000 * 110.03682 * 240.66783 * 9 6 5 36 36 H 1.00893 * 111.00174 * 279.64758 * 10 9 6 37 37 H 1.09006 * 109.46129 * 35.02684 * 11 10 9 38 38 H 1.08997 * 109.49426 * 61.41967 * 12 11 10 39 39 H 1.08999 * 109.49411 * 301.32539 * 12 11 10 40 40 H 1.09002 * 109.58496 * 185.57993 * 13 12 11 41 41 H 1.08998 * 109.58508 * 65.15045 * 13 12 11 42 42 H 0.96999 * 120.00577 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.58278 * 65.92606 * 23 14 13 44 44 H 1.08996 * 109.58355 * 186.34913 * 23 14 13 45 45 H 1.08998 * 109.49932 * 298.57322 * 24 11 10 46 46 H 1.08995 * 109.50298 * 58.67115 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0734 -0.7825 1.2222 5 6 3.4916 -1.1993 0.7592 6 6 3.3164 -1.5414 -0.7348 7 1 3.1686 -2.6143 -0.8581 8 6 4.5463 -1.0880 -1.5240 9 6 2.0699 -0.7789 -1.2172 10 7 2.4356 0.1553 -2.2904 11 6 1.2778 0.4570 -3.1428 12 6 1.4773 1.8198 -3.8100 13 6 0.2530 2.1465 -4.6709 14 7 0.0281 1.0409 -5.6121 15 6 -0.0724 1.2790 -6.9568 16 1 0.2058 0.5111 -7.6635 17 6 -0.5374 2.5052 -7.4117 18 7 -1.1875 3.3067 -6.5949 19 14 -0.2403 3.0180 -9.1833 20 1 -1.3705 2.5561 -10.0285 21 1 -0.1374 4.4974 -9.2597 22 1 1.0232 2.4080 -9.6699 23 6 -0.0930 -0.3243 -5.0825 24 6 1.1407 -0.6239 -4.2175 25 1 -0.3633 -1.0266 0.0468 26 1 -0.3634 0.5539 0.8656 27 1 -0.3633 0.4727 -0.9125 28 1 1.4589 -1.6602 1.4224 29 1 2.1273 -0.1390 2.1003 30 1 3.8322 -2.0738 1.3134 31 1 4.1930 -0.3740 0.8818 32 1 4.7000 -0.0192 -1.3749 33 1 5.4231 -1.6334 -1.1753 34 1 4.3917 -1.2883 -2.5842 35 1 1.3173 -1.4816 -1.5746 36 1 2.8367 1.0006 -1.9130 37 1 0.3743 0.4798 -2.5334 38 1 2.3669 1.7901 -4.4391 39 1 1.5982 2.5857 -3.0439 40 1 0.4315 3.0678 -5.2254 41 1 -0.6218 2.2658 -4.0317 42 1 -1.5127 4.1635 -6.9128 43 1 -0.9954 -0.4022 -4.4761 44 1 -0.1429 -1.0336 -5.9085 45 1 2.0335 -0.6306 -4.8427 46 1 1.0221 -1.5972 -3.7415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925004491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:10 Heat of formation + Delta-G solvation = -14.513924 kcal Electronic energy + Delta-G solvation = -21727.415946 eV Core-core repulsion = 18843.634652 eV Total energy + Delta-G solvation = -2883.781294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.60882 -38.88101 -35.79786 -33.60372 -33.41130 -31.70535 -30.94747 -29.27004 -27.09011 -25.78174 -24.68420 -23.82719 -22.91780 -21.26540 -20.71127 -19.88924 -18.68413 -17.07983 -16.71636 -16.49020 -15.75686 -15.67806 -15.31486 -14.85163 -14.79495 -14.42244 -14.32063 -13.91275 -13.77141 -13.56810 -13.43520 -13.07855 -12.99380 -12.66971 -12.52275 -12.47761 -12.32453 -12.05464 -11.94568 -11.75905 -11.65305 -11.54041 -11.49938 -11.39545 -11.23916 -11.13894 -10.99499 -10.53097 -9.08928 -8.68579 -7.87799 -5.32832 1.46074 1.47645 1.57861 2.51441 3.20661 3.32778 3.64389 3.69664 3.78200 3.96004 4.07965 4.16295 4.30899 4.41248 4.51868 4.53170 4.58137 4.63641 4.69649 4.70492 4.76828 4.84543 4.86792 4.92436 4.95689 4.99424 5.05966 5.11554 5.14069 5.22191 5.25827 5.29196 5.35605 5.37754 5.42079 5.51407 5.54676 5.57493 5.64979 5.71902 5.75403 6.31264 6.39343 6.61888 7.14844 7.86145 8.38250 9.18650 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.035716 B = 0.004420 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.782948 B = 6332.625194 C = 6615.610564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.085 4.085 7 H 0.069 0.931 8 C -0.117 4.117 9 C 0.090 3.910 10 N -0.671 5.671 11 C 0.105 3.895 12 C -0.125 4.125 13 C 0.181 3.819 14 N -0.609 5.609 15 C -0.265 4.265 16 H 0.064 0.936 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.271 1.271 23 C 0.141 3.859 24 C -0.101 4.101 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.341 0.659 37 H 0.037 0.963 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.054 0.946 41 H -0.007 1.007 42 H 0.250 0.750 43 H 0.010 0.990 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.926 -8.442 16.134 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.104 4.104 7 H 0.087 0.913 8 C -0.175 4.175 9 C -0.020 4.020 10 N -0.301 5.301 11 C -0.005 4.005 12 C -0.165 4.165 13 C 0.055 3.945 14 N -0.333 5.333 15 C -0.395 4.395 16 H 0.082 0.918 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.795 3.205 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.196 1.196 23 C 0.015 3.985 24 C -0.140 4.140 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.160 0.840 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.011 0.989 42 H 0.059 0.941 43 H 0.028 0.972 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.110 -8.796 15.657 20.137 hybrid contribution -0.951 1.216 -0.594 1.654 sum 8.158 -7.581 15.063 18.733 Atomic orbital electron populations 1.21872 0.95372 1.01875 1.01132 1.22710 0.95521 0.99286 0.96634 0.91344 1.22489 0.96298 0.99663 0.96626 1.22430 0.96798 1.01450 0.94666 1.21743 0.94632 0.99043 0.95021 0.91262 1.21460 0.95724 1.00471 0.99804 1.22350 0.96340 0.94125 0.89210 1.60750 1.29303 1.18139 1.21910 1.21270 0.91911 0.94051 0.93254 1.22137 0.99205 0.96409 0.98700 1.20527 0.92389 0.91635 0.89952 1.44315 1.83503 1.02454 1.03004 1.19518 1.36249 1.00129 0.83592 0.91792 1.25782 0.97948 0.99258 1.01493 1.70182 1.39742 1.11468 1.36795 0.85289 0.78170 0.76856 0.80221 1.21054 1.21720 1.19615 1.21151 0.95089 0.86512 0.95770 1.21863 0.97853 0.97710 0.96620 0.92246 0.92066 0.94354 0.91128 0.91013 0.90779 0.91450 0.93218 0.93359 0.93389 0.91571 0.83984 0.94538 0.92885 0.91814 0.92807 0.98918 0.94103 0.97211 0.92967 0.92999 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.98 71.98 0.65 -2.48 16 2 C -0.12 -2.43 3.04 -9.69 -0.03 -2.46 16 3 H 0.07 1.44 7.57 -2.39 -0.02 1.42 16 4 C -0.11 -1.80 6.33 31.91 0.20 -1.60 16 5 C -0.12 -1.80 6.36 31.67 0.20 -1.60 16 6 C -0.09 -1.63 3.50 -10.07 -0.04 -1.67 16 7 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 8 C -0.12 -2.36 8.06 71.98 0.58 -1.78 16 9 C 0.09 2.02 2.61 45.64 0.12 2.14 16 10 N -0.67 -17.66 4.26 -465.62 -1.98 -19.64 16 11 C 0.10 3.45 2.29 44.94 0.10 3.56 16 12 C -0.13 -4.79 5.36 30.67 0.16 -4.63 16 13 C 0.18 8.99 5.30 86.36 0.46 9.45 16 14 N -0.61 -31.70 2.99 -698.26 -2.09 -33.79 16 15 C -0.26 -15.03 9.58 84.03 0.81 -14.23 16 16 H 0.06 3.55 7.89 -2.91 -0.02 3.53 16 17 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 18 N -0.94 -56.33 11.18 21.65 0.24 -56.09 16 19 Si 0.97 45.67 29.59 68.60 2.03 47.70 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 C 0.14 6.12 6.54 86.51 0.57 6.68 16 24 C -0.10 -3.60 5.59 30.82 0.17 -3.43 16 25 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.04 1.00 5.96 -2.39 -0.01 0.98 16 28 H 0.07 1.08 8.04 -2.39 -0.02 1.06 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.03 7.83 -2.39 -0.02 1.02 16 32 H 0.05 1.01 7.46 -2.39 -0.02 0.99 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 1.16 7.81 -2.39 -0.02 1.14 16 35 H 0.07 1.67 6.85 -2.39 -0.02 1.65 16 36 H 0.34 8.52 7.25 -89.70 -0.65 7.87 16 37 H 0.04 1.26 5.44 -2.38 -0.01 1.25 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.06 2.16 8.10 -2.39 -0.02 2.14 16 40 H 0.05 3.02 6.04 -2.39 -0.01 3.00 16 41 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 45 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.07 2.07 7.44 -2.39 -0.02 2.05 16 Total: -1.00 -61.57 339.14 2.85 -58.72 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.28 Total: 17.55 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.37 Total: -14.45 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -3.83 Total: -109.52 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -61.57 2.85 -58.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925004491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.209 kcal (2) G-P(sol) polarization free energy of solvation -61.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds