Wall clock time and date at job start Mon Mar 30 2020 00:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 5 5 C 1.46901 * 110.99793 * 275.00325 * 4 2 1 6 6 C 1.53000 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47233 * 299.99531 * 6 5 4 8 8 C 1.52996 * 109.47328 * 60.00000 * 6 5 4 9 9 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 6 5 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 6 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 6 13 13 N 1.31519 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46678 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47258 * 119.99423 * 14 12 10 17 17 H 1.48493 * 109.47346 * 240.00028 * 14 12 10 18 18 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 19 19 C 1.39686 * 127.04916 * 84.99904 * 18 2 1 20 20 N 1.31375 * 105.89974 * 179.97438 * 19 18 2 21 21 N 1.28600 * 108.72088 * 0.02562 * 20 19 18 22 22 C 1.46504 * 124.62192 * 179.97438 * 21 20 19 23 23 N 1.28605 * 110.76261 * 359.74368 * 21 20 19 24 24 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 25 25 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 27 27 H 1.00899 * 110.99995 * 151.04723 * 4 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 30 30 H 1.09000 * 109.46986 * 60.00203 * 7 6 5 31 31 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 33 33 H 1.08992 * 109.47554 * 59.99639 * 8 6 5 34 34 H 1.09004 * 109.47108 * 179.97438 * 8 6 5 35 35 H 1.09000 * 109.46870 * 299.99783 * 8 6 5 36 36 H 1.09001 * 109.47109 * 299.99380 * 9 6 5 37 37 H 1.09002 * 109.47508 * 59.99571 * 9 6 5 38 38 H 0.97000 * 119.99425 * 180.02562 * 13 12 10 39 39 H 1.07997 * 127.04410 * 0.02562 * 19 18 2 40 40 H 1.08998 * 109.47309 * 90.02040 * 22 21 20 41 41 H 1.08997 * 109.47039 * 210.02355 * 22 21 20 42 42 H 1.09000 * 109.46731 * 330.02453 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 1.6472 -1.6892 3.8955 8 6 3.9934 -1.0849 3.2852 9 6 2.6608 0.4202 4.7694 10 6 3.1663 -0.3240 5.9785 11 1 3.4160 -1.3720 5.9021 12 6 3.3100 0.3330 7.1821 13 7 3.0064 1.6093 7.2749 14 14 3.9372 -0.5893 8.6806 15 1 4.2057 -2.0033 8.3149 16 1 5.1906 0.0443 9.1630 17 1 2.9134 -0.5423 9.7551 18 6 2.0323 -0.7104 -1.2304 19 6 2.2213 -0.1616 -2.5009 20 7 2.6692 -1.1412 -3.2531 21 7 2.7565 -2.2053 -2.5363 22 6 3.2188 -3.5052 -3.0290 23 7 2.3871 -1.9718 -1.3267 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.9173 -1.1205 1.0288 28 1 1.0869 0.6164 2.5525 29 1 2.7587 1.0463 2.1182 30 1 1.6006 -2.3682 3.0441 31 1 2.0128 -2.2271 4.7700 32 1 0.6516 -1.2958 4.1013 33 1 4.6694 -0.2612 3.0564 34 1 4.3596 -1.6227 4.1598 35 1 3.9468 -1.7639 2.4339 36 1 3.3367 1.2443 4.5409 37 1 1.6652 0.8132 4.9752 38 1 3.1078 2.0715 8.1216 39 1 2.0376 0.8589 -2.8027 40 1 4.2985 -3.5797 -2.9000 41 1 2.7300 -4.3014 -2.4675 42 1 2.9717 -3.6018 -4.0863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926426517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:19 Heat of formation + Delta-G solvation = 94.400686 kcal Electronic energy + Delta-G solvation = -20480.191847 eV Core-core repulsion = 17497.593102 eV Total energy + Delta-G solvation = -2982.598746 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.62824 -37.90992 -35.62198 -33.48583 -32.50523 -32.00346 -29.77227 -27.52210 -26.82825 -26.26630 -25.35994 -23.52247 -22.25595 -22.11167 -20.00288 -18.00735 -17.26759 -16.91891 -16.19732 -15.72199 -15.00684 -14.61277 -14.48699 -14.04600 -13.54230 -13.31358 -13.13727 -13.03049 -12.61696 -12.27342 -12.01147 -11.96052 -11.87638 -11.36579 -11.20300 -10.93037 -10.83625 -10.74260 -10.70387 -10.44417 -10.31634 -10.19311 -10.05982 -9.62484 -9.24835 -8.96281 -8.76595 -8.28333 -8.02020 -5.92906 -3.92484 1.73108 2.21481 2.33784 3.34809 3.42598 3.46367 3.94189 4.31593 4.52877 4.68469 4.75661 5.00329 5.01106 5.12054 5.32752 5.41706 5.43214 5.73596 5.80511 5.84490 5.87103 6.02966 6.05894 6.10258 6.32143 6.36230 6.41372 6.58648 6.59424 6.74834 6.86279 6.89725 7.26755 7.30282 7.33111 7.46734 7.73647 7.77459 7.91078 8.08085 8.26323 8.53039 9.13219 9.70154 11.18857 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.035203 B = 0.003701 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.201258 B = 7563.012106 C = 7952.808376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.172 3.828 3 H 0.062 0.938 4 N -0.675 5.675 5 C 0.068 3.932 6 C -0.057 4.057 7 C -0.116 4.116 8 C -0.129 4.129 9 C 0.034 3.966 10 C -0.505 4.505 11 H 0.059 0.941 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.285 1.285 18 C 0.004 3.996 19 C -0.023 4.023 20 N -0.295 5.295 21 N -0.165 5.165 22 C 0.110 3.890 23 N -0.266 5.266 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.344 0.656 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.012 0.988 37 H 0.015 0.985 38 H 0.258 0.742 39 H 0.196 0.804 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 -5.947 -20.297 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.060 3.940 3 H 0.080 0.920 4 N -0.308 5.308 5 C -0.060 4.060 6 C -0.057 4.057 7 C -0.173 4.173 8 C -0.186 4.186 9 C -0.004 4.004 10 C -0.543 4.543 11 H 0.077 0.923 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.715 3.285 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.159 4.159 19 C -0.206 4.206 20 N -0.136 5.136 21 N -0.065 5.065 22 C -0.030 4.030 23 N -0.108 5.108 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.165 0.835 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.031 0.969 37 H 0.034 0.966 38 H 0.067 0.933 39 H 0.212 0.788 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.966 -7.330 -20.504 21.864 hybrid contribution 0.894 1.025 0.927 1.646 sum -1.072 -6.305 -19.577 20.596 Atomic orbital electron populations 1.21757 0.93289 1.02642 1.01455 1.19818 0.95905 0.94159 0.84162 0.92048 1.60592 1.34190 1.33027 1.03005 1.22201 1.00275 0.93159 0.90389 1.20609 0.94127 0.96685 0.94321 1.21593 0.98146 0.97532 1.00020 1.21767 0.96953 0.99623 1.00305 1.19129 0.96951 0.93558 0.90755 1.21291 1.42540 0.96340 0.94132 0.92252 1.25016 0.95945 0.94837 0.98850 1.69981 1.49431 1.08958 1.25435 0.86617 0.78448 0.80091 0.83338 1.19786 1.21235 1.21176 1.23363 1.04460 0.90446 0.97645 1.24596 1.04694 1.00166 0.91161 1.73999 1.19204 0.94461 1.25944 1.47973 1.45233 1.09742 1.03593 1.22079 1.01399 0.78091 1.01464 1.74121 1.15442 1.18266 1.02928 0.92815 0.91958 0.91548 0.83531 0.91318 0.95848 0.93757 0.92826 0.94191 0.94223 0.91764 0.94799 0.96940 0.96639 0.93271 0.78757 0.89399 0.87899 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.40 37.15 0.35 -1.22 16 2 C 0.17 2.21 3.12 -68.87 -0.22 2.00 16 3 H 0.06 0.74 7.80 -51.93 -0.40 0.34 16 4 N -0.67 -10.30 5.44 -107.95 -0.59 -10.89 16 5 C 0.07 1.19 4.45 -3.82 -0.02 1.17 16 6 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 7 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 8 C -0.13 -2.49 7.89 37.16 0.29 -2.19 16 9 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 10 C -0.50 -13.91 7.65 -34.44 -0.26 -14.18 16 11 H 0.06 1.60 5.68 -52.48 -0.30 1.31 16 12 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 13 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 14 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 C 0.00 0.06 6.05 -82.25 -0.50 -0.44 16 19 C -0.02 -0.27 12.16 -17.21 -0.21 -0.47 16 20 N -0.29 -3.61 12.05 30.68 0.37 -3.24 16 21 N -0.16 -1.93 4.35 -16.64 -0.07 -2.00 16 22 C 0.11 0.72 11.57 59.85 0.69 1.41 16 23 N -0.27 -3.64 11.60 33.72 0.39 -3.25 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.80 7.45 -51.93 -0.39 0.41 16 27 H 0.34 5.46 6.13 -39.29 -0.24 5.22 16 28 H 0.07 1.20 7.44 -51.93 -0.39 0.81 16 29 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 30 H 0.04 0.81 7.60 -51.93 -0.39 0.41 16 31 H 0.05 1.13 6.61 -51.93 -0.34 0.79 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 35 H 0.03 0.57 6.57 -51.93 -0.34 0.23 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.20 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -32.27 337.64 -5.89 -38.16 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.92 Total: 0.63 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 0.13 Total: -14.99 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.84 Total: -45.62 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.27 -5.89 -38.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926426517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.559 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds