Wall clock time and date at job start Mon Mar 30 2020 00:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 5 5 C 1.46901 * 110.99793 * 275.00325 * 4 2 1 6 6 C 1.53000 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47233 * 299.99531 * 6 5 4 8 8 C 1.52996 * 109.47328 * 60.00000 * 6 5 4 9 9 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 6 5 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 6 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 6 13 13 N 1.31519 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46678 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47258 * 119.99423 * 14 12 10 17 17 H 1.48493 * 109.47346 * 240.00028 * 14 12 10 18 18 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 19 19 C 1.39686 * 127.04916 * 84.99904 * 18 2 1 20 20 N 1.31375 * 105.89974 * 179.97438 * 19 18 2 21 21 N 1.28600 * 108.72088 * 0.02562 * 20 19 18 22 22 C 1.46504 * 124.62192 * 179.97438 * 21 20 19 23 23 N 1.28605 * 110.76261 * 359.74368 * 21 20 19 24 24 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 25 25 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 27 27 H 1.00899 * 110.99995 * 151.04723 * 4 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 30 30 H 1.09000 * 109.46986 * 60.00203 * 7 6 5 31 31 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 33 33 H 1.08992 * 109.47554 * 59.99639 * 8 6 5 34 34 H 1.09004 * 109.47108 * 179.97438 * 8 6 5 35 35 H 1.09000 * 109.46870 * 299.99783 * 8 6 5 36 36 H 1.09001 * 109.47109 * 299.99380 * 9 6 5 37 37 H 1.09002 * 109.47508 * 59.99571 * 9 6 5 38 38 H 0.97000 * 119.99425 * 180.02562 * 13 12 10 39 39 H 1.07997 * 127.04410 * 0.02562 * 19 18 2 40 40 H 1.08998 * 109.47309 * 90.02040 * 22 21 20 41 41 H 1.08997 * 109.47039 * 210.02355 * 22 21 20 42 42 H 1.09000 * 109.46731 * 330.02453 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 1.6472 -1.6892 3.8955 8 6 3.9934 -1.0849 3.2852 9 6 2.6608 0.4202 4.7694 10 6 3.1663 -0.3240 5.9785 11 1 3.4160 -1.3720 5.9021 12 6 3.3100 0.3330 7.1821 13 7 3.0064 1.6093 7.2749 14 14 3.9372 -0.5893 8.6806 15 1 4.2057 -2.0033 8.3149 16 1 5.1906 0.0443 9.1630 17 1 2.9134 -0.5423 9.7551 18 6 2.0323 -0.7104 -1.2304 19 6 2.2213 -0.1616 -2.5009 20 7 2.6692 -1.1412 -3.2531 21 7 2.7565 -2.2053 -2.5363 22 6 3.2188 -3.5052 -3.0290 23 7 2.3871 -1.9718 -1.3267 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.9173 -1.1205 1.0288 28 1 1.0869 0.6164 2.5525 29 1 2.7587 1.0463 2.1182 30 1 1.6006 -2.3682 3.0441 31 1 2.0128 -2.2271 4.7700 32 1 0.6516 -1.2958 4.1013 33 1 4.6694 -0.2612 3.0564 34 1 4.3596 -1.6227 4.1598 35 1 3.9468 -1.7639 2.4339 36 1 3.3367 1.2443 4.5409 37 1 1.6652 0.8132 4.9752 38 1 3.1078 2.0715 8.1216 39 1 2.0376 0.8589 -2.8027 40 1 4.2985 -3.5797 -2.9000 41 1 2.7300 -4.3014 -2.4675 42 1 2.9717 -3.6018 -4.0863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926426517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:19 Heat of formation + Delta-G solvation = 72.836604 kcal Electronic energy + Delta-G solvation = -20481.126936 eV Core-core repulsion = 17497.593102 eV Total energy + Delta-G solvation = -2983.533834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.49496 -39.35720 -36.94476 -34.67902 -34.04986 -33.13794 -30.98104 -28.80918 -28.25224 -27.86562 -26.80791 -24.96123 -23.62349 -23.09200 -21.00815 -19.58421 -18.31744 -18.15291 -17.74358 -16.97956 -16.49705 -15.92710 -15.55144 -15.45896 -14.88696 -14.73491 -14.28361 -13.97870 -13.88135 -13.61575 -13.50484 -13.27236 -12.97040 -12.84521 -12.67908 -12.54832 -12.33040 -12.23028 -12.16114 -12.03862 -11.83542 -11.71226 -11.34914 -11.22762 -10.83148 -10.71434 -10.48646 -10.07284 -9.25143 -8.12074 -6.18432 0.85490 1.40931 1.42138 1.44390 1.54166 1.54511 2.45274 3.09024 3.21945 3.22637 3.87976 4.17602 4.21419 4.23990 4.32493 4.34684 4.41932 4.45949 4.50406 4.59206 4.78108 4.80114 4.93336 4.98194 4.99885 5.09026 5.12050 5.23330 5.24017 5.26322 5.41939 5.53958 5.56779 5.60895 5.69274 5.80535 5.90161 5.95591 6.16156 6.40496 6.51231 6.96737 7.38216 7.48611 9.00410 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.035203 B = 0.003701 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.201258 B = 7563.012106 C = 7952.808376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.172 3.828 3 H 0.073 0.927 4 N -0.674 5.674 5 C 0.081 3.919 6 C -0.054 4.054 7 C -0.105 4.105 8 C -0.121 4.121 9 C 0.041 3.959 10 C -0.513 4.513 11 H 0.064 0.936 12 C -0.004 4.004 13 N -0.937 5.937 14 Si 0.955 3.045 15 H -0.262 1.262 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.010 4.010 19 C -0.023 4.023 20 N -0.308 5.308 21 N -0.165 5.165 22 C 0.097 3.903 23 N -0.290 5.290 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.342 0.658 28 H 0.066 0.934 29 H 0.021 0.979 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.059 0.941 36 H -0.015 1.015 37 H -0.012 1.012 38 H 0.259 0.741 39 H 0.224 0.776 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.560 -7.070 -21.582 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.060 3.940 3 H 0.090 0.910 4 N -0.307 5.307 5 C -0.048 4.048 6 C -0.054 4.054 7 C -0.162 4.162 8 C -0.178 4.178 9 C 0.003 3.997 10 C -0.551 4.551 11 H 0.082 0.918 12 C -0.200 4.200 13 N -0.578 5.578 14 Si 0.780 3.220 15 H -0.186 1.186 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.172 4.172 19 C -0.206 4.206 20 N -0.150 5.150 21 N -0.067 5.067 22 C -0.042 4.042 23 N -0.133 5.133 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.162 0.838 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.004 0.996 37 H 0.006 0.994 38 H 0.068 0.932 39 H 0.240 0.760 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.715 -8.471 -21.808 23.458 hybrid contribution 0.811 1.356 1.249 2.014 sum -0.903 -7.115 -20.559 21.774 Atomic orbital electron populations 1.21716 0.92519 1.02012 1.02331 1.19868 0.96410 0.94475 0.83201 0.90967 1.60542 1.33979 1.32735 1.03441 1.21915 0.99799 0.92928 0.90118 1.20478 0.95345 0.95990 0.93634 1.21480 0.97436 0.97322 1.00009 1.21665 0.95892 0.99747 1.00529 1.18997 0.94360 0.93648 0.92646 1.21655 1.41844 0.96652 0.94961 0.91804 1.25893 0.96332 0.95665 1.02149 1.70113 1.50817 1.10608 1.26302 0.85547 0.77807 0.79193 0.79422 1.18625 1.20822 1.20812 1.23355 1.05251 0.90576 0.98059 1.25067 1.03823 1.01278 0.90388 1.73995 1.19688 0.94931 1.26339 1.48449 1.44436 1.10770 1.02995 1.22499 1.02365 0.76529 1.02757 1.74058 1.16228 1.18827 1.04156 0.90535 0.93268 0.92089 0.83793 0.91582 0.96105 0.91830 0.94472 0.94801 0.94510 0.93478 0.92186 0.99639 0.99412 0.93187 0.75986 0.88029 0.86905 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.40 71.98 0.68 -2.12 16 2 C 0.17 4.15 3.12 44.16 0.14 4.28 16 3 H 0.07 1.61 7.80 -2.39 -0.02 1.59 16 4 N -0.67 -19.64 5.44 -495.44 -2.69 -22.33 16 5 C 0.08 2.78 4.45 86.30 0.38 3.17 16 6 C -0.05 -2.18 0.60 -52.18 -0.03 -2.22 16 7 C -0.11 -4.11 8.06 71.98 0.58 -3.53 16 8 C -0.12 -4.57 7.89 71.98 0.57 -4.00 16 9 C 0.04 2.14 4.04 29.85 0.12 2.26 16 10 C -0.51 -28.64 7.65 25.60 0.20 -28.44 16 11 H 0.06 3.45 5.68 -2.91 -0.02 3.43 16 12 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 13 N -0.94 -57.39 13.29 21.45 0.28 -57.11 16 14 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 15 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 18 C -0.01 -0.23 6.05 42.98 0.26 0.03 16 19 C -0.02 -0.49 12.16 85.11 1.03 0.55 16 20 N -0.31 -6.93 12.05 -56.86 -0.69 -7.62 16 21 N -0.16 -3.55 4.35 -206.55 -0.90 -4.45 16 22 C 0.10 1.07 11.57 127.77 1.48 2.55 16 23 N -0.29 -7.45 11.60 -47.24 -0.55 -8.00 16 24 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.40 7.45 -2.39 -0.02 1.38 16 27 H 0.34 10.26 6.13 -89.69 -0.55 9.71 16 28 H 0.07 2.29 7.44 -2.39 -0.02 2.28 16 29 H 0.02 0.72 8.06 -2.39 -0.02 0.70 16 30 H 0.06 2.23 7.60 -2.39 -0.02 2.21 16 31 H 0.04 1.55 6.61 -2.39 -0.02 1.53 16 32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.92 6.62 -2.38 -0.02 1.90 16 35 H 0.06 1.94 6.57 -2.39 -0.02 1.92 16 36 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.22 2.95 8.06 -2.91 -0.02 2.92 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -69.34 337.64 3.80 -65.55 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.45 Total: 14.35 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 5.87 Total: -27.23 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -4.54 Total: -99.51 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -69.34 3.80 -65.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926426517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.383 kcal (2) G-P(sol) polarization free energy of solvation -69.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds