Wall clock time and date at job start Mon Mar 30 2020 00:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47566 * 2 1 4 4 N 1.46903 * 109.46748 * 239.99482 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47164 * 299.99955 * 6 5 4 8 8 C 1.52999 * 109.46623 * 59.99856 * 6 5 4 9 9 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 10 10 C 1.50696 * 109.47242 * 180.02562 * 9 6 5 11 11 H 1.08004 * 119.99967 * 0.02562 * 10 9 6 12 12 C 1.37875 * 120.00542 * 180.02562 * 10 9 6 13 13 N 1.31516 * 119.99408 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.46854 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47025 * 119.99859 * 14 12 10 17 17 H 1.48498 * 109.46692 * 239.99831 * 14 12 10 18 18 C 1.50706 * 109.46748 * 120.00132 * 2 1 3 19 19 C 1.35351 * 126.91211 * 124.68781 * 18 2 1 20 20 N 1.33777 * 106.49514 * 179.90184 * 19 18 2 21 21 N 1.28638 * 108.88254 * 0.36452 * 20 19 18 22 22 N 1.28717 * 110.18229 * 359.76783 * 21 20 19 23 23 C 1.46497 * 125.86894 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.46768 * 60.00165 * 1 2 3 25 25 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46732 * 300.00617 * 1 2 3 27 27 H 1.00895 * 111.00497 * 321.04431 * 4 2 1 28 28 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 29 29 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 30 30 H 1.09000 * 109.47140 * 60.00051 * 7 6 5 31 31 H 1.09001 * 109.47230 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47375 * 300.00034 * 7 6 5 33 33 H 1.09001 * 109.47362 * 60.00551 * 8 6 5 34 34 H 1.09002 * 109.46716 * 179.97438 * 8 6 5 35 35 H 1.09000 * 109.47486 * 299.99829 * 8 6 5 36 36 H 1.08996 * 109.46952 * 300.00302 * 9 6 5 37 37 H 1.09001 * 109.46832 * 60.00321 * 9 6 5 38 38 H 0.96999 * 119.99910 * 180.02562 * 13 12 10 39 39 H 1.07994 * 126.75025 * 0.02664 * 19 18 2 40 40 H 1.09001 * 109.46653 * 270.02234 * 23 22 21 41 41 H 1.08992 * 109.46994 * 30.02210 * 23 22 21 42 42 H 1.08999 * 109.46714 * 150.02275 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5962 -0.5331 -3.5742 7 6 3.9934 -1.0854 -3.2852 8 6 1.6471 -1.6894 -3.8952 9 6 2.6610 0.4197 -4.7694 10 6 3.1663 -0.3246 -5.9784 11 1 3.4159 -1.3726 -5.9020 12 6 3.3102 0.3322 -7.1821 13 7 3.0058 1.6083 -7.2752 14 14 3.9359 -0.5906 -8.6808 15 1 4.2044 -2.0044 -8.3150 16 1 2.9116 -0.5426 -9.7549 17 1 5.1896 0.0420 -9.1638 18 6 2.0323 -0.7105 1.2305 19 6 2.8839 -1.7617 1.2716 20 7 3.0530 -2.0633 2.5639 21 7 2.3466 -1.2574 3.2754 22 7 1.7181 -0.4294 2.5163 23 6 0.8170 0.6342 2.9670 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 1.4496 -1.4980 -1.4100 28 1 2.7589 1.0460 -2.1182 29 1 1.0871 0.6161 -2.5525 30 1 3.9468 -1.7644 -2.4338 31 1 4.3592 -1.6241 -4.1594 32 1 4.6696 -0.2616 -3.0564 33 1 0.6516 -1.2960 -4.1012 34 1 2.0128 -2.2274 -4.7698 35 1 1.6004 -2.3684 -3.0438 36 1 1.6654 0.8128 -4.9751 37 1 3.3369 1.2437 -4.5409 38 1 3.1066 2.0704 -8.1221 39 1 3.3390 -2.2579 0.4272 40 1 -0.2003 0.2473 3.0268 41 1 1.1311 0.9840 3.9503 42 1 0.8498 1.4623 2.2591 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926427126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:21 Heat of formation + Delta-G solvation = 83.414233 kcal Electronic energy + Delta-G solvation = -20668.586594 eV Core-core repulsion = 17685.511440 eV Total energy + Delta-G solvation = -2983.075154 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.26321 -38.16846 -35.79518 -34.61127 -32.48103 -30.84628 -29.17232 -28.16971 -26.92234 -26.36964 -25.37584 -23.62228 -22.66297 -21.84092 -20.54225 -18.17703 -17.18882 -16.68014 -16.26522 -15.47671 -15.32142 -14.67687 -14.48628 -13.98259 -13.63393 -13.45122 -13.34018 -13.08193 -12.93699 -12.64339 -12.29353 -12.02880 -11.91061 -11.77070 -11.44281 -11.04164 -10.92969 -10.80801 -10.77070 -10.54018 -10.32825 -10.15490 -10.10946 -9.74126 -9.09868 -9.06547 -8.87500 -8.34699 -8.30469 -5.99246 -3.99230 1.55650 2.24494 2.65995 3.31004 3.39250 3.42627 3.96689 4.33212 4.40895 4.48310 4.64364 4.80705 4.87505 4.97069 4.97921 5.31027 5.36940 5.41146 5.55908 5.61184 5.70611 5.74123 5.81354 5.93404 6.16412 6.25480 6.33851 6.43799 6.49760 6.61691 6.73603 6.80067 7.08513 7.16700 7.22513 7.28898 7.49533 7.66369 7.80612 8.00991 8.45092 8.52626 9.06397 9.64051 11.12456 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.040432 B = 0.003728 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.356276 B = 7509.845589 C = 7841.810527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.159 3.841 3 H 0.093 0.907 4 N -0.675 5.675 5 C 0.072 3.928 6 C -0.058 4.058 7 C -0.117 4.117 8 C -0.130 4.130 9 C 0.034 3.966 10 C -0.506 4.506 11 H 0.060 0.940 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.285 1.285 18 C -0.006 4.006 19 C -0.024 4.024 20 N -0.277 5.277 21 N -0.099 5.099 22 N -0.295 5.295 23 C 0.080 3.920 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.346 0.654 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.012 0.988 37 H 0.015 0.985 38 H 0.258 0.742 39 H 0.195 0.805 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 -1.076 16.556 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.046 3.954 3 H 0.111 0.889 4 N -0.307 5.307 5 C -0.056 4.056 6 C -0.058 4.058 7 C -0.175 4.175 8 C -0.187 4.187 9 C -0.004 4.004 10 C -0.545 4.545 11 H 0.078 0.922 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.715 3.285 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.138 4.138 19 C -0.181 4.181 20 N -0.142 5.142 21 N -0.078 5.078 22 N -0.089 5.089 23 C -0.062 4.062 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.167 0.833 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.031 0.969 37 H 0.033 0.967 38 H 0.068 0.932 39 H 0.212 0.788 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.831 -1.293 18.076 19.037 hybrid contribution -0.961 0.279 -2.219 2.434 sum -6.792 -1.014 15.857 17.280 Atomic orbital electron populations 1.22645 0.96175 1.02934 1.02946 1.19757 0.92282 0.96809 0.86593 0.88910 1.60374 1.56833 1.10256 1.03210 1.22176 0.99118 0.94798 0.89532 1.20632 0.95020 0.96161 0.93985 1.21614 0.95797 0.99951 1.00106 1.21784 0.98674 0.97838 1.00444 1.19124 0.96869 0.93664 0.90721 1.21271 1.42763 0.96382 0.94063 0.92188 1.25011 0.95840 0.94828 0.98903 1.69972 1.49296 1.09001 1.25507 0.86612 0.78497 0.80128 0.83241 1.19733 1.21207 1.21151 1.22208 1.03411 1.01610 0.86595 1.23427 1.01226 0.98122 0.95328 1.75078 1.16826 1.18974 1.03345 1.78268 1.08372 1.01167 1.20000 1.47073 1.32373 1.24521 1.04981 1.22276 0.92791 0.88016 1.03068 0.90981 0.91909 0.92247 0.83340 0.91313 0.95389 0.93792 0.92611 0.94107 0.94086 0.91611 0.94751 0.96926 0.96663 0.93220 0.78811 0.89255 0.88204 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 8.99 37.16 0.33 -1.24 16 2 C 0.16 1.63 2.68 -68.86 -0.18 1.45 16 3 H 0.09 0.94 7.80 -51.93 -0.40 0.54 16 4 N -0.67 -8.26 4.77 -107.95 -0.51 -8.77 16 5 C 0.07 1.08 4.45 -3.82 -0.02 1.06 16 6 C -0.06 -1.05 0.60 -154.51 -0.09 -1.15 16 7 C -0.12 -2.13 8.06 37.16 0.30 -1.83 16 8 C -0.13 -2.23 7.89 37.16 0.29 -1.94 16 9 C 0.03 0.81 4.04 -27.89 -0.11 0.69 16 10 C -0.51 -13.42 7.65 -34.44 -0.26 -13.68 16 11 H 0.06 1.55 5.68 -52.48 -0.30 1.26 16 12 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 13 N -0.90 -26.27 13.29 55.43 0.74 -25.54 16 14 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 C -0.01 -0.07 6.31 -82.08 -0.52 -0.58 16 19 C -0.02 -0.32 11.37 -17.73 -0.20 -0.53 16 20 N -0.28 -4.26 12.41 30.23 0.38 -3.89 16 21 N -0.10 -1.40 13.16 60.35 0.79 -0.61 16 22 N -0.29 -3.24 3.74 -63.79 -0.24 -3.48 16 23 C 0.08 0.47 9.69 59.85 0.58 1.05 16 24 H 0.07 0.64 7.45 -51.93 -0.39 0.25 16 25 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 26 H 0.06 0.38 5.57 -51.93 -0.29 0.09 16 27 H 0.35 4.11 6.51 -39.29 -0.26 3.86 16 28 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 29 H 0.03 0.41 7.44 -51.93 -0.39 0.03 16 30 H 0.04 0.70 7.60 -51.93 -0.39 0.31 16 31 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 1.26 6.61 -51.93 -0.34 0.91 16 35 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 36 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.19 2.44 7.88 -52.49 -0.41 2.03 16 40 H 0.09 0.38 7.85 -51.93 -0.41 -0.03 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.40 7.25 -51.93 -0.38 0.03 16 LS Contribution 331.46 15.07 5.00 5.00 Total: -1.00 -31.28 331.46 -5.59 -36.87 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.73 Total: -0.50 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 0.02 Total: -15.28 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 1.15 Total: -42.28 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.28 -5.59 -36.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926427126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.283 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds