Wall clock time and date at job start Mon Mar 30 2020 00:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47566 * 2 1 4 4 N 1.46903 * 109.46748 * 239.99482 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47164 * 299.99955 * 6 5 4 8 8 C 1.52999 * 109.46623 * 59.99856 * 6 5 4 9 9 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 10 10 C 1.50696 * 109.47242 * 180.02562 * 9 6 5 11 11 H 1.08004 * 119.99967 * 0.02562 * 10 9 6 12 12 C 1.37875 * 120.00542 * 180.02562 * 10 9 6 13 13 N 1.31516 * 119.99408 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.46854 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47025 * 119.99859 * 14 12 10 17 17 H 1.48498 * 109.46692 * 239.99831 * 14 12 10 18 18 C 1.50706 * 109.46748 * 120.00132 * 2 1 3 19 19 C 1.35351 * 126.91211 * 124.68781 * 18 2 1 20 20 N 1.33777 * 106.49514 * 179.90184 * 19 18 2 21 21 N 1.28638 * 108.88254 * 0.36452 * 20 19 18 22 22 N 1.28717 * 110.18229 * 359.76783 * 21 20 19 23 23 C 1.46497 * 125.86894 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.46768 * 60.00165 * 1 2 3 25 25 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46732 * 300.00617 * 1 2 3 27 27 H 1.00895 * 111.00497 * 321.04431 * 4 2 1 28 28 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 29 29 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 30 30 H 1.09000 * 109.47140 * 60.00051 * 7 6 5 31 31 H 1.09001 * 109.47230 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47375 * 300.00034 * 7 6 5 33 33 H 1.09001 * 109.47362 * 60.00551 * 8 6 5 34 34 H 1.09002 * 109.46716 * 179.97438 * 8 6 5 35 35 H 1.09000 * 109.47486 * 299.99829 * 8 6 5 36 36 H 1.08996 * 109.46952 * 300.00302 * 9 6 5 37 37 H 1.09001 * 109.46832 * 60.00321 * 9 6 5 38 38 H 0.96999 * 119.99910 * 180.02562 * 13 12 10 39 39 H 1.07994 * 126.75025 * 0.02664 * 19 18 2 40 40 H 1.09001 * 109.46653 * 270.02234 * 23 22 21 41 41 H 1.08992 * 109.46994 * 30.02210 * 23 22 21 42 42 H 1.08999 * 109.46714 * 150.02275 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5962 -0.5331 -3.5742 7 6 3.9934 -1.0854 -3.2852 8 6 1.6471 -1.6894 -3.8952 9 6 2.6610 0.4197 -4.7694 10 6 3.1663 -0.3246 -5.9784 11 1 3.4159 -1.3726 -5.9020 12 6 3.3102 0.3322 -7.1821 13 7 3.0058 1.6083 -7.2752 14 14 3.9359 -0.5906 -8.6808 15 1 4.2044 -2.0044 -8.3150 16 1 2.9116 -0.5426 -9.7549 17 1 5.1896 0.0420 -9.1638 18 6 2.0323 -0.7105 1.2305 19 6 2.8839 -1.7617 1.2716 20 7 3.0530 -2.0633 2.5639 21 7 2.3466 -1.2574 3.2754 22 7 1.7181 -0.4294 2.5163 23 6 0.8170 0.6342 2.9670 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 1.4496 -1.4980 -1.4100 28 1 2.7589 1.0460 -2.1182 29 1 1.0871 0.6161 -2.5525 30 1 3.9468 -1.7644 -2.4338 31 1 4.3592 -1.6241 -4.1594 32 1 4.6696 -0.2616 -3.0564 33 1 0.6516 -1.2960 -4.1012 34 1 2.0128 -2.2274 -4.7698 35 1 1.6004 -2.3684 -3.0438 36 1 1.6654 0.8128 -4.9751 37 1 3.3369 1.2437 -4.5409 38 1 3.1066 2.0704 -8.1221 39 1 3.3390 -2.2579 0.4272 40 1 -0.2003 0.2473 3.0268 41 1 1.1311 0.9840 3.9503 42 1 0.8498 1.4623 2.2591 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926427126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:21 Heat of formation + Delta-G solvation = 62.594502 kcal Electronic energy + Delta-G solvation = -20669.489406 eV Core-core repulsion = 17685.511440 eV Total energy + Delta-G solvation = -2983.977965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.19161 -39.42005 -37.01314 -35.50695 -34.41239 -31.99329 -30.11545 -28.89088 -28.69342 -27.82659 -26.68654 -24.83911 -24.00380 -22.95281 -21.40951 -19.59522 -18.30111 -18.10883 -17.52235 -16.72627 -16.45195 -16.08709 -15.67454 -15.01804 -14.84225 -14.59235 -14.33741 -14.11003 -13.90010 -13.80618 -13.72227 -13.42681 -13.06422 -12.78829 -12.72832 -12.59545 -12.43164 -12.30195 -12.16174 -12.09501 -11.84536 -11.74917 -11.32869 -10.96537 -10.81018 -10.70959 -10.47736 -10.04017 -9.31891 -8.11798 -6.17436 0.65597 1.41036 1.43233 1.52085 1.54395 1.65212 2.45708 3.05701 3.22934 3.54139 3.75342 4.00911 4.09774 4.14085 4.24532 4.29748 4.32470 4.44633 4.52098 4.59499 4.69450 4.75054 4.84805 4.92037 4.94651 5.02978 5.14568 5.18430 5.28174 5.28987 5.37656 5.58238 5.60929 5.64950 5.68014 5.71610 5.93160 5.97798 6.07228 6.41158 6.50108 6.98528 7.49868 7.55847 9.00524 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.040432 B = 0.003728 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.356276 B = 7509.845589 C = 7841.810527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.164 3.836 3 H 0.100 0.900 4 N -0.674 5.674 5 C 0.087 3.913 6 C -0.054 4.054 7 C -0.110 4.110 8 C -0.124 4.124 9 C 0.039 3.961 10 C -0.511 4.511 11 H 0.064 0.936 12 C -0.003 4.003 13 N -0.937 5.937 14 Si 0.951 3.049 15 H -0.262 1.262 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.002 3.998 19 C -0.041 4.041 20 N -0.313 5.313 21 N -0.122 5.122 22 N -0.283 5.283 23 C 0.064 3.936 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.351 0.649 28 H 0.061 0.939 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.029 0.971 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.068 0.932 36 H -0.012 1.012 37 H -0.015 1.015 38 H 0.259 0.741 39 H 0.198 0.802 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.791 -1.530 17.481 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.052 3.948 3 H 0.118 0.882 4 N -0.307 5.307 5 C -0.041 4.041 6 C -0.054 4.054 7 C -0.167 4.167 8 C -0.181 4.181 9 C 0.002 3.998 10 C -0.550 4.550 11 H 0.082 0.918 12 C -0.199 4.199 13 N -0.579 5.579 14 Si 0.777 3.223 15 H -0.186 1.186 16 H -0.209 1.209 17 H -0.211 1.211 18 C -0.132 4.132 19 C -0.199 4.199 20 N -0.178 5.178 21 N -0.101 5.101 22 N -0.078 5.078 23 C -0.076 4.076 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.172 0.828 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.006 0.994 37 H 0.003 0.997 38 H 0.067 0.933 39 H 0.215 0.785 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.875 -1.758 19.037 20.317 hybrid contribution -0.673 0.477 -2.456 2.591 sum -7.548 -1.282 16.581 18.263 Atomic orbital electron populations 1.22593 0.94197 1.03242 1.04152 1.19773 0.93688 0.96506 0.84880 0.88244 1.60205 1.57718 1.09992 1.02788 1.21823 0.98877 0.94400 0.89037 1.20478 0.95955 0.95694 0.93297 1.21532 0.95232 0.99782 1.00149 1.21699 0.97946 0.97553 1.00891 1.19011 0.94334 0.93775 0.92691 1.21677 1.41647 0.96701 0.94927 0.91755 1.25853 0.96390 0.95618 1.02088 1.70099 1.50940 1.10589 1.26238 0.85600 0.77770 0.79287 0.79643 1.18601 1.20878 1.21063 1.22300 1.02659 1.00939 0.87283 1.23618 1.02133 0.99153 0.95011 1.75023 1.18168 1.20305 1.04278 1.78182 1.09292 1.02069 1.20558 1.47421 1.31662 1.24303 1.04455 1.22789 0.92921 0.87431 1.04409 0.91131 0.92057 0.89750 0.82780 0.92060 0.95007 0.91156 0.94675 0.95137 0.94111 0.93864 0.91326 0.99376 0.99653 0.93259 0.78550 0.87070 0.86979 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 8.99 71.98 0.65 -1.77 16 2 C 0.16 2.90 2.68 44.17 0.12 3.02 16 3 H 0.10 1.70 7.80 -2.39 -0.02 1.68 16 4 N -0.67 -14.86 4.77 -495.44 -2.36 -17.22 16 5 C 0.09 2.49 4.45 86.31 0.38 2.88 16 6 C -0.05 -1.94 0.60 -52.18 -0.03 -1.97 16 7 C -0.11 -3.90 8.06 71.98 0.58 -3.32 16 8 C -0.12 -4.05 7.89 71.98 0.57 -3.48 16 9 C 0.04 1.93 4.04 29.85 0.12 2.05 16 10 C -0.51 -27.43 7.65 25.60 0.20 -27.24 16 11 H 0.06 3.34 5.68 -2.91 -0.02 3.32 16 12 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 13 N -0.94 -56.00 13.29 21.45 0.28 -55.72 16 14 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 15 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 C 0.00 0.05 6.31 41.36 0.26 0.31 16 19 C -0.04 -1.06 11.37 83.73 0.95 -0.11 16 20 N -0.31 -9.48 12.41 -58.26 -0.72 -10.21 16 21 N -0.12 -3.32 13.16 37.02 0.49 -2.83 16 22 N -0.28 -5.57 3.74 -355.73 -1.33 -6.90 16 23 C 0.06 0.53 9.69 127.77 1.24 1.77 16 24 H 0.07 1.01 7.45 -2.39 -0.02 0.99 16 25 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 26 H 0.08 0.70 5.57 -2.39 -0.01 0.69 16 27 H 0.35 7.27 6.51 -89.70 -0.58 6.69 16 28 H 0.06 1.85 8.06 -2.39 -0.02 1.83 16 29 H 0.03 0.89 7.44 -2.39 -0.02 0.87 16 30 H 0.07 2.11 7.60 -2.39 -0.02 2.10 16 31 H 0.03 1.37 6.62 -2.39 -0.02 1.35 16 32 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 1.60 6.61 -2.39 -0.02 1.59 16 35 H 0.07 1.77 6.57 -2.39 -0.02 1.75 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 38 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 39 H 0.20 4.73 7.88 -2.91 -0.02 4.71 16 40 H 0.11 0.50 7.85 -2.39 -0.02 0.48 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.12 0.50 7.25 -2.39 -0.02 0.48 16 Total: -1.00 -69.24 331.46 4.30 -64.94 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.42 Total: 9.67 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 5.50 Total: -27.57 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -3.64 Total: -92.88 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -69.24 4.30 -64.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926427126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.538 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds