Wall clock time and date at job start Mon Mar 30 2020 00:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47130 * 2 1 4 4 N 1.46908 * 109.46730 * 119.99246 * 2 1 3 5 5 C 1.46893 * 111.00287 * 274.99973 * 4 2 1 6 6 C 1.52997 * 109.47168 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47005 * 299.99656 * 6 5 4 8 8 C 1.52997 * 109.47298 * 59.99860 * 6 5 4 9 9 C 1.53001 * 109.47243 * 180.02562 * 6 5 4 10 10 C 1.50696 * 109.47248 * 179.97438 * 9 6 5 11 11 H 1.07998 * 120.00100 * 0.02562 * 10 9 6 12 12 C 1.37874 * 120.00092 * 179.97438 * 10 9 6 13 13 N 1.31519 * 120.00261 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00104 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.46903 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47078 * 120.00286 * 14 12 10 17 17 H 1.48500 * 109.46964 * 240.00173 * 14 12 10 18 18 C 1.50692 * 109.47068 * 239.99327 * 2 1 3 19 19 C 1.35352 * 126.91265 * 275.18466 * 18 2 1 20 20 N 1.33779 * 106.49496 * 179.97438 * 19 18 2 21 21 N 1.28632 * 108.88458 * 0.02562 * 20 19 18 22 22 N 1.28717 * 110.17908 * 359.75409 * 21 20 19 23 23 C 1.46503 * 125.86572 * 180.24028 * 22 21 20 24 24 H 1.08996 * 109.47032 * 182.54747 * 1 2 3 25 25 H 1.09004 * 109.47172 * 302.54674 * 1 2 3 26 26 H 1.09001 * 109.46722 * 62.54910 * 1 2 3 27 27 H 1.00905 * 110.99784 * 38.95571 * 4 2 1 28 28 H 1.09006 * 109.47472 * 60.00180 * 5 4 2 29 29 H 1.09004 * 109.47489 * 300.00428 * 5 4 2 30 30 H 1.09001 * 109.46727 * 60.00273 * 7 6 5 31 31 H 1.08998 * 109.46979 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47412 * 300.00017 * 7 6 5 33 33 H 1.09004 * 109.46625 * 60.00314 * 8 6 5 34 34 H 1.08996 * 109.47119 * 179.97438 * 8 6 5 35 35 H 1.09001 * 109.47288 * 300.00250 * 8 6 5 36 36 H 1.09004 * 109.47351 * 300.00096 * 9 6 5 37 37 H 1.08998 * 109.47286 * 59.99915 * 9 6 5 38 38 H 0.96996 * 120.00474 * 179.97438 * 13 12 10 39 39 H 1.07994 * 126.75621 * 359.94031 * 19 18 2 40 40 H 1.08997 * 109.47135 * 265.04572 * 23 22 21 41 41 H 1.09000 * 109.47094 * 25.04994 * 23 22 21 42 42 H 1.09007 * 109.47126 * 145.04671 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0824 0.2227 2.3469 6 6 2.5961 -0.5326 3.5743 7 6 1.6470 -1.6889 3.8956 8 6 3.9934 -1.0849 3.2854 9 6 2.6609 0.4204 4.7695 10 6 3.1663 -0.3237 5.9785 11 1 3.4166 -1.3715 5.9021 12 6 3.3100 0.3333 7.1821 13 7 3.0056 1.6094 7.2752 14 14 3.9371 -0.5890 8.6807 15 1 4.2067 -2.0027 8.3148 16 1 5.1905 0.0447 9.1631 17 1 2.9132 -0.5418 9.7552 18 6 2.0323 -0.7105 -1.2303 19 6 2.2111 -2.0434 -1.3832 20 7 2.6682 -2.2251 -2.6273 21 7 2.7665 -1.0805 -3.2060 22 7 2.3908 -0.1448 -2.4060 23 6 2.3596 1.2871 -2.7145 24 1 -0.3633 -1.0266 0.0457 25 1 -0.3634 0.5529 0.8663 26 1 -0.3633 0.4738 -0.9120 27 1 1.4495 -1.4978 1.4103 28 1 1.0870 0.6166 2.5526 29 1 2.7588 1.0464 2.1182 30 1 1.6005 -2.3679 3.0442 31 1 2.0132 -2.2273 4.7697 32 1 0.6516 -1.2954 4.1015 33 1 4.6694 -0.2610 3.0566 34 1 4.3595 -1.6226 4.1599 35 1 3.9468 -1.7640 2.4340 36 1 3.3367 1.2445 4.5409 37 1 1.6653 0.8135 4.9752 38 1 3.1064 2.0716 8.1220 39 1 2.0224 -2.8096 -0.6459 40 1 3.2821 1.7534 -2.3686 41 1 2.2645 1.4247 -3.7916 42 1 1.5089 1.7484 -2.2127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926427127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:23 Heat of formation + Delta-G solvation = 81.956856 kcal Electronic energy + Delta-G solvation = -20653.330810 eV Core-core repulsion = 17670.192459 eV Total energy + Delta-G solvation = -2983.138351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.26905 -38.16286 -35.72626 -34.63591 -32.50358 -30.88858 -29.12904 -28.06337 -26.92826 -26.37342 -25.38466 -23.79154 -22.71568 -21.78958 -20.49151 -18.18401 -17.24794 -16.67781 -16.26863 -15.39029 -15.25973 -14.79061 -14.45671 -13.98825 -13.58501 -13.48022 -13.19338 -13.11489 -12.99736 -12.69799 -12.33757 -12.03119 -11.84852 -11.76401 -11.48945 -11.04203 -10.93927 -10.80252 -10.77620 -10.54260 -10.33653 -10.16296 -10.11657 -9.74640 -9.19298 -9.03025 -8.87123 -8.35139 -8.28582 -5.99706 -3.99727 1.54719 2.25573 2.62117 3.30603 3.38843 3.42309 3.99929 4.35060 4.42640 4.49035 4.70875 4.78724 4.90686 4.92087 5.01092 5.27884 5.36482 5.44337 5.52577 5.60969 5.70501 5.73323 5.86076 5.94525 6.15801 6.21401 6.24987 6.43244 6.48958 6.61723 6.73517 6.79408 7.08665 7.16271 7.21941 7.28638 7.49629 7.65743 7.79981 8.00462 8.44656 8.50250 9.05872 9.63575 11.11975 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.037001 B = 0.003756 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.558892 B = 7453.931426 C = 7644.172421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.156 3.844 3 H 0.088 0.912 4 N -0.675 5.675 5 C 0.072 3.928 6 C -0.058 4.058 7 C -0.130 4.130 8 C -0.117 4.117 9 C 0.034 3.966 10 C -0.507 4.507 11 H 0.060 0.940 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.286 1.286 18 C 0.005 3.995 19 C -0.033 4.033 20 N -0.274 5.274 21 N -0.098 5.098 22 N -0.294 5.294 23 C 0.080 3.920 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.345 0.655 28 H 0.028 0.972 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.014 0.986 37 H 0.013 0.987 38 H 0.258 0.742 39 H 0.187 0.813 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 -0.326 -16.391 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.043 3.957 3 H 0.106 0.894 4 N -0.307 5.307 5 C -0.056 4.056 6 C -0.058 4.058 7 C -0.187 4.187 8 C -0.174 4.174 9 C -0.004 4.004 10 C -0.545 4.545 11 H 0.078 0.922 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.715 3.285 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.128 4.128 19 C -0.190 4.190 20 N -0.140 5.140 21 N -0.077 5.077 22 N -0.088 5.088 23 C -0.062 4.062 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.166 0.834 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.068 0.932 39 H 0.204 0.796 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.065 -0.421 -17.870 18.331 hybrid contribution -0.961 0.232 2.223 2.433 sum -5.026 -0.189 -15.646 16.435 Atomic orbital electron populations 1.22498 0.95496 1.03119 1.02568 1.19777 0.92598 0.96760 0.86555 0.89407 1.60461 1.56880 1.10204 1.03164 1.22175 0.99082 0.94774 0.89610 1.20631 0.94995 0.96194 0.93980 1.21781 0.98679 0.97811 1.00452 1.21610 0.95813 0.99916 1.00110 1.19125 0.96875 0.93643 0.90723 1.21271 1.42752 0.96400 0.94061 0.92191 1.25010 0.95831 0.94826 0.98900 1.69970 1.49310 1.08994 1.25514 0.86614 0.78504 0.80129 0.83240 1.19731 1.21157 1.21181 1.22148 1.06367 0.94416 0.89870 1.23231 1.05376 0.94935 0.95494 1.75050 1.16253 1.15669 1.06988 1.78266 1.19336 0.91381 1.18677 1.47118 1.42718 1.09377 1.09559 1.22238 1.04838 0.74463 1.04660 0.91648 0.91124 0.92425 0.83401 0.95337 0.91490 0.94744 0.91612 0.94015 0.94253 0.92605 0.93787 0.96717 0.96884 0.93214 0.79616 0.89020 0.88027 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.15 37.16 0.34 -1.21 16 2 C 0.16 1.61 2.74 -68.86 -0.19 1.43 16 3 H 0.09 0.86 7.36 -51.93 -0.38 0.48 16 4 N -0.67 -8.42 5.15 -107.95 -0.56 -8.98 16 5 C 0.07 1.09 4.44 -3.83 -0.02 1.07 16 6 C -0.06 -1.07 0.60 -154.51 -0.09 -1.16 16 7 C -0.13 -2.23 7.89 37.16 0.29 -1.94 16 8 C -0.12 -2.18 8.07 37.16 0.30 -1.88 16 9 C 0.03 0.81 4.04 -27.88 -0.11 0.70 16 10 C -0.51 -13.46 7.65 -34.44 -0.26 -13.72 16 11 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 12 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 13 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 14 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 C 0.00 0.06 6.03 -82.09 -0.50 -0.44 16 19 C -0.03 -0.43 11.62 -17.73 -0.21 -0.64 16 20 N -0.27 -4.18 12.41 30.24 0.38 -3.80 16 21 N -0.10 -1.39 13.16 60.35 0.79 -0.60 16 22 N -0.29 -3.31 3.74 -63.79 -0.24 -3.55 16 23 C 0.08 0.50 10.93 59.85 0.65 1.15 16 24 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 25 H 0.07 0.64 7.52 -51.93 -0.39 0.25 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.35 4.08 6.49 -39.29 -0.25 3.82 16 28 H 0.03 0.42 7.48 -51.93 -0.39 0.04 16 29 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 30 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 31 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 35 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.19 2.07 8.06 -52.49 -0.42 1.65 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.41 7.87 -51.92 -0.41 0.00 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -31.67 336.54 -5.63 -37.30 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.90 Total: -0.90 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 0.11 Total: -15.22 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 1.11 Total: -42.47 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.67 -5.63 -37.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926427127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.253 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds