Wall clock time and date at job start Mon Mar 30 2020 00:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47130 * 2 1 4 4 N 1.46908 * 109.46730 * 119.99246 * 2 1 3 5 5 C 1.46893 * 111.00287 * 274.99973 * 4 2 1 6 6 C 1.52997 * 109.47168 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47005 * 299.99656 * 6 5 4 8 8 C 1.52997 * 109.47298 * 59.99860 * 6 5 4 9 9 C 1.53001 * 109.47243 * 180.02562 * 6 5 4 10 10 C 1.50696 * 109.47248 * 179.97438 * 9 6 5 11 11 H 1.07998 * 120.00100 * 0.02562 * 10 9 6 12 12 C 1.37874 * 120.00092 * 179.97438 * 10 9 6 13 13 N 1.31519 * 120.00261 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00104 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.46903 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47078 * 120.00286 * 14 12 10 17 17 H 1.48500 * 109.46964 * 240.00173 * 14 12 10 18 18 C 1.50692 * 109.47068 * 239.99327 * 2 1 3 19 19 C 1.35352 * 126.91265 * 275.18466 * 18 2 1 20 20 N 1.33779 * 106.49496 * 179.97438 * 19 18 2 21 21 N 1.28632 * 108.88458 * 0.02562 * 20 19 18 22 22 N 1.28717 * 110.17908 * 359.75409 * 21 20 19 23 23 C 1.46503 * 125.86572 * 180.24028 * 22 21 20 24 24 H 1.08996 * 109.47032 * 182.54747 * 1 2 3 25 25 H 1.09004 * 109.47172 * 302.54674 * 1 2 3 26 26 H 1.09001 * 109.46722 * 62.54910 * 1 2 3 27 27 H 1.00905 * 110.99784 * 38.95571 * 4 2 1 28 28 H 1.09006 * 109.47472 * 60.00180 * 5 4 2 29 29 H 1.09004 * 109.47489 * 300.00428 * 5 4 2 30 30 H 1.09001 * 109.46727 * 60.00273 * 7 6 5 31 31 H 1.08998 * 109.46979 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47412 * 300.00017 * 7 6 5 33 33 H 1.09004 * 109.46625 * 60.00314 * 8 6 5 34 34 H 1.08996 * 109.47119 * 179.97438 * 8 6 5 35 35 H 1.09001 * 109.47288 * 300.00250 * 8 6 5 36 36 H 1.09004 * 109.47351 * 300.00096 * 9 6 5 37 37 H 1.08998 * 109.47286 * 59.99915 * 9 6 5 38 38 H 0.96996 * 120.00474 * 179.97438 * 13 12 10 39 39 H 1.07994 * 126.75621 * 359.94031 * 19 18 2 40 40 H 1.08997 * 109.47135 * 265.04572 * 23 22 21 41 41 H 1.09000 * 109.47094 * 25.04994 * 23 22 21 42 42 H 1.09007 * 109.47126 * 145.04671 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0824 0.2227 2.3469 6 6 2.5961 -0.5326 3.5743 7 6 1.6470 -1.6889 3.8956 8 6 3.9934 -1.0849 3.2854 9 6 2.6609 0.4204 4.7695 10 6 3.1663 -0.3237 5.9785 11 1 3.4166 -1.3715 5.9021 12 6 3.3100 0.3333 7.1821 13 7 3.0056 1.6094 7.2752 14 14 3.9371 -0.5890 8.6807 15 1 4.2067 -2.0027 8.3148 16 1 5.1905 0.0447 9.1631 17 1 2.9132 -0.5418 9.7552 18 6 2.0323 -0.7105 -1.2303 19 6 2.2111 -2.0434 -1.3832 20 7 2.6682 -2.2251 -2.6273 21 7 2.7665 -1.0805 -3.2060 22 7 2.3908 -0.1448 -2.4060 23 6 2.3596 1.2871 -2.7145 24 1 -0.3633 -1.0266 0.0457 25 1 -0.3634 0.5529 0.8663 26 1 -0.3633 0.4738 -0.9120 27 1 1.4495 -1.4978 1.4103 28 1 1.0870 0.6166 2.5526 29 1 2.7588 1.0464 2.1182 30 1 1.6005 -2.3679 3.0442 31 1 2.0132 -2.2273 4.7697 32 1 0.6516 -1.2954 4.1015 33 1 4.6694 -0.2610 3.0566 34 1 4.3595 -1.6226 4.1599 35 1 3.9468 -1.7640 2.4340 36 1 3.3367 1.2445 4.5409 37 1 1.6653 0.8135 4.9752 38 1 3.1064 2.0716 8.1220 39 1 2.0224 -2.8096 -0.6459 40 1 3.2821 1.7534 -2.3686 41 1 2.2645 1.4247 -3.7916 42 1 1.5089 1.7484 -2.2127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926427127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:23 Heat of formation + Delta-G solvation = 60.927235 kcal Electronic energy + Delta-G solvation = -20654.242723 eV Core-core repulsion = 17670.192459 eV Total energy + Delta-G solvation = -2984.050263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.19034 -39.42426 -36.97299 -35.49495 -34.44167 -32.04089 -30.08785 -28.76262 -28.72663 -27.84324 -26.70528 -24.93238 -24.15111 -22.88290 -21.36754 -19.59439 -18.31055 -18.18082 -17.52425 -16.69915 -16.38715 -16.05592 -15.76872 -15.06224 -14.80268 -14.59022 -14.32841 -14.13702 -13.87014 -13.74721 -13.71500 -13.46610 -13.14434 -12.79012 -12.74797 -12.57951 -12.43141 -12.34428 -12.18758 -12.11083 -11.85926 -11.71874 -11.34464 -10.98418 -10.82435 -10.73005 -10.48203 -10.06495 -9.31086 -8.12265 -6.17982 0.64638 1.40669 1.42892 1.52298 1.54040 1.64528 2.45298 3.09134 3.22396 3.55562 3.73781 3.99987 4.08018 4.12585 4.21987 4.28847 4.32322 4.43497 4.50545 4.59642 4.71181 4.75241 4.84652 4.91242 4.96219 5.01024 5.13230 5.21112 5.26470 5.27900 5.30199 5.57160 5.59326 5.63497 5.66734 5.70204 5.91833 5.96942 6.06836 6.40566 6.50894 6.97842 7.49346 7.54531 9.00004 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.037001 B = 0.003756 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.558892 B = 7453.931426 C = 7644.172421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.162 3.838 3 H 0.098 0.902 4 N -0.676 5.676 5 C 0.087 3.913 6 C -0.054 4.054 7 C -0.124 4.124 8 C -0.109 4.109 9 C 0.040 3.960 10 C -0.512 4.512 11 H 0.064 0.936 12 C -0.002 4.002 13 N -0.937 5.937 14 Si 0.951 3.049 15 H -0.262 1.262 16 H -0.284 1.284 17 H -0.282 1.282 18 C 0.009 3.991 19 C -0.046 4.046 20 N -0.310 5.310 21 N -0.123 5.123 22 N -0.286 5.286 23 C 0.065 3.935 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.352 0.648 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.028 0.972 34 H 0.035 0.965 35 H 0.066 0.934 36 H -0.015 1.015 37 H -0.011 1.011 38 H 0.259 0.741 39 H 0.199 0.801 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 -0.764 -17.091 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.050 3.950 3 H 0.116 0.884 4 N -0.309 5.309 5 C -0.042 4.042 6 C -0.054 4.054 7 C -0.181 4.181 8 C -0.166 4.166 9 C 0.002 3.998 10 C -0.550 4.550 11 H 0.082 0.918 12 C -0.199 4.199 13 N -0.578 5.578 14 Si 0.777 3.223 15 H -0.186 1.186 16 H -0.211 1.211 17 H -0.208 1.208 18 C -0.125 4.125 19 C -0.204 4.204 20 N -0.175 5.175 21 N -0.102 5.102 22 N -0.080 5.080 23 C -0.074 4.074 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.173 0.827 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.003 0.997 37 H 0.007 0.993 38 H 0.068 0.932 39 H 0.216 0.784 40 H 0.121 0.879 41 H 0.134 0.866 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.671 -0.865 -18.604 19.201 hybrid contribution -0.775 0.428 2.404 2.562 sum -5.446 -0.438 -16.200 17.096 Atomic orbital electron populations 1.22437 0.93874 1.03488 1.03322 1.19793 0.93701 0.96690 0.84837 0.88426 1.60308 1.57798 1.10038 1.02785 1.21830 0.98897 0.94394 0.89081 1.20480 0.95823 0.95784 0.93354 1.21702 0.97976 0.97513 1.00935 1.21519 0.95396 0.99664 1.00010 1.19010 0.94383 0.93739 0.92651 1.21672 1.41689 0.96705 0.94943 0.91801 1.25848 0.96367 0.95613 1.02067 1.70095 1.50916 1.10567 1.26253 0.85605 0.77788 0.79272 0.79660 1.18637 1.21062 1.20826 1.22281 1.05832 0.94091 0.90298 1.23579 1.05490 0.96089 0.95242 1.75000 1.17673 1.16636 1.08181 1.78189 1.20591 0.91847 1.19560 1.47480 1.40964 1.10606 1.08971 1.22702 1.06563 0.71944 1.06216 0.91451 0.91133 0.90971 0.82688 0.94889 0.92163 0.91239 0.93878 0.93948 0.95299 0.94630 0.91504 0.99685 0.99269 0.93239 0.78363 0.87906 0.86611 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 9.15 71.98 0.66 -1.80 16 2 C 0.16 2.88 2.74 44.17 0.12 3.00 16 3 H 0.10 1.59 7.36 -2.39 -0.02 1.57 16 4 N -0.68 -15.04 5.15 -495.45 -2.55 -17.59 16 5 C 0.09 2.48 4.44 86.30 0.38 2.86 16 6 C -0.05 -1.95 0.60 -52.18 -0.03 -1.99 16 7 C -0.12 -4.05 7.89 71.98 0.57 -3.49 16 8 C -0.11 -3.93 8.07 71.98 0.58 -3.35 16 9 C 0.04 1.94 4.04 29.85 0.12 2.07 16 10 C -0.51 -27.47 7.65 25.60 0.20 -27.27 16 11 H 0.06 3.32 5.68 -2.91 -0.02 3.30 16 12 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 13 N -0.94 -55.86 13.29 21.45 0.28 -55.57 16 14 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 C 0.01 0.19 6.03 41.35 0.25 0.44 16 19 C -0.05 -1.12 11.62 83.73 0.97 -0.15 16 20 N -0.31 -9.24 12.41 -58.25 -0.72 -9.96 16 21 N -0.12 -3.39 13.16 37.02 0.49 -2.90 16 22 N -0.29 -5.86 3.74 -355.72 -1.33 -7.19 16 23 C 0.07 0.64 10.93 127.77 1.40 2.04 16 24 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 25 H 0.07 1.05 7.52 -2.39 -0.02 1.03 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 27 H 0.35 7.14 6.49 -89.69 -0.58 6.55 16 28 H 0.03 0.92 7.48 -2.38 -0.02 0.90 16 29 H 0.06 1.82 8.06 -2.38 -0.02 1.80 16 30 H 0.07 1.78 6.57 -2.39 -0.02 1.76 16 31 H 0.04 1.59 6.62 -2.39 -0.02 1.58 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.03 1.40 6.62 -2.39 -0.02 1.39 16 35 H 0.07 2.10 7.60 -2.39 -0.02 2.08 16 36 H -0.02 -0.83 8.14 -2.38 -0.02 -0.85 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.20 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.82 16 41 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.12 0.59 7.87 -2.38 -0.02 0.57 16 Total: -1.00 -69.41 336.54 4.29 -65.12 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.42 Total: 9.61 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 5.68 Total: -27.29 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -3.83 Total: -93.22 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -69.41 4.29 -65.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926427127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.047 kcal (2) G-P(sol) polarization free energy of solvation -69.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds