Wall clock time and date at job start Mon Mar 30 2020 00:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34773 * 120.00005 * 2 1 4 4 O 1.21278 * 120.00146 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99970 * 359.72561 * 3 2 1 6 6 C 1.52998 * 117.50453 * 248.74770 * 5 3 2 7 7 C 1.52998 * 117.49928 * 180.08480 * 5 3 2 8 8 C 1.46498 * 119.99883 * 180.02562 * 2 1 3 9 9 H 1.09002 * 110.21344 * 179.97438 * 8 2 1 10 10 C 1.50128 * 110.24695 * 301.92798 * 8 2 1 11 11 C 1.54635 * 110.92823 * 216.54718 * 10 8 2 12 12 C 1.54900 * 110.19040 * 321.33646 * 11 10 8 13 13 N 1.43434 * 116.08080 * 318.53021 * 12 11 10 14 14 C 1.36931 * 120.53821 * 271.59054 * 13 12 11 15 15 H 1.08001 * 120.00287 * 140.20587 * 14 13 12 16 16 C 1.38817 * 119.99899 * 320.20539 * 14 13 12 17 17 N 1.31618 * 120.00244 * 156.34845 * 16 14 13 18 18 Si 1.86797 * 119.99672 * 336.34529 * 16 14 13 19 19 H 1.48496 * 109.47169 * 95.57661 * 18 16 14 20 20 H 1.48505 * 109.47075 * 215.57189 * 18 16 14 21 21 H 1.48497 * 109.47316 * 335.57159 * 18 16 14 22 22 C 1.50168 * 118.92576 * 91.56163 * 13 12 11 23 23 C 1.46239 * 107.53650 * 289.59126 * 22 13 12 24 24 H 1.09001 * 109.47535 * 89.99927 * 1 2 3 25 25 H 1.09007 * 109.46906 * 210.00001 * 1 2 3 26 26 H 1.09004 * 109.47019 * 329.99585 * 1 2 3 27 27 H 1.09001 * 115.55000 * 34.42249 * 5 3 2 28 28 H 1.09010 * 117.49329 * 359.97438 * 6 5 3 29 29 H 1.08994 * 117.50104 * 145.01955 * 6 5 3 30 30 H 1.08997 * 117.49946 * 214.98124 * 7 5 3 31 31 H 1.09000 * 117.49969 * 359.97438 * 7 5 3 32 32 H 1.08994 * 109.21075 * 336.99907 * 10 8 2 33 33 H 1.09008 * 109.20815 * 96.31861 * 10 8 2 34 34 H 1.09005 * 109.42846 * 201.06311 * 11 10 8 35 35 H 1.08998 * 109.13782 * 81.42987 * 11 10 8 36 36 H 1.08997 * 108.16044 * 196.81321 * 12 11 10 37 37 H 1.08994 * 108.00171 * 80.11977 * 12 11 10 38 38 H 0.96997 * 120.00513 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.84633 * 170.08376 * 22 13 12 40 40 H 1.08998 * 109.90052 * 49.13553 * 22 13 12 41 41 H 1.08994 * 108.52070 * 297.16740 * 23 22 13 42 42 H 1.08999 * 108.52032 * 179.64552 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0063 6 6 1.4633 3.3271 -1.2727 7 6 2.2075 3.7626 -0.0079 8 6 2.1975 -1.2687 -0.0006 9 1 3.2716 -1.0835 -0.0009 10 6 1.8121 -2.0916 1.1945 11 6 3.0307 -2.8661 1.7480 12 6 3.9092 -3.3845 0.5823 13 7 3.2062 -3.9228 -0.5461 14 6 2.8618 -5.2475 -0.5839 15 1 1.9018 -5.5449 -0.9795 16 6 3.7466 -6.2084 -0.1138 17 7 3.2956 -7.3774 0.2891 18 14 5.5773 -5.8421 -0.0532 19 1 5.9426 -5.3685 1.3060 20 1 6.3398 -7.0768 -0.3686 21 1 5.9049 -4.7901 -1.0487 22 6 2.8533 -3.0099 -1.6850 23 6 1.8058 -2.1039 -1.2153 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 0.4455 2.4751 0.5458 28 1 2.0601 2.9456 -2.1014 29 1 0.5749 3.8925 -1.5538 30 1 1.8082 4.6144 0.5425 31 1 3.2933 3.6676 -0.0041 32 1 1.4211 -1.4347 1.9713 33 1 1.0392 -2.8038 0.9054 34 1 2.6837 -3.7114 2.3423 35 1 3.6215 -2.2004 2.3772 36 1 4.5690 -4.1593 0.9726 37 1 4.5285 -2.5579 0.2338 38 1 3.9137 -8.0486 0.6179 39 1 2.4857 -3.5950 -2.5280 40 1 3.7301 -2.4370 -1.9867 41 1 0.9259 -2.6945 -0.9603 42 1 1.5415 -1.4287 -2.0291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948123976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:53 Heat of formation + Delta-G solvation = 24.646532 kcal Electronic energy + Delta-G solvation = -21485.868386 eV Core-core repulsion = 18467.952123 eV Total energy + Delta-G solvation = -3017.916264 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31001 -38.28091 -36.17783 -35.35612 -32.78264 -31.86945 -30.86895 -26.99857 -26.48596 -25.13331 -23.41019 -23.03885 -22.60827 -19.97315 -19.51650 -18.75963 -17.52531 -16.54138 -16.28224 -15.41677 -15.20553 -14.69065 -14.57541 -14.08636 -14.00566 -13.29995 -13.06374 -12.90756 -12.72741 -12.50699 -12.23422 -12.02082 -11.86456 -11.72135 -11.58050 -10.99470 -10.78141 -10.73620 -10.63673 -10.50525 -10.32174 -10.08211 -9.95330 -9.66258 -9.60892 -9.42509 -8.47731 -8.42131 -6.72491 -5.99115 -3.41347 2.52580 3.02677 3.36946 3.50412 3.58570 3.71510 4.42043 4.56584 4.58768 4.70456 4.83703 4.94033 5.12357 5.18723 5.31776 5.36480 5.37958 5.47742 5.58844 5.63772 5.69133 5.77170 5.90839 5.94160 5.94177 5.98123 6.21590 6.31625 6.35322 6.50684 6.57217 6.67063 6.76423 6.81451 6.91478 6.93878 7.01966 7.52377 8.11131 8.27856 8.37967 9.03878 9.73939 10.19756 11.16318 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035715 B = 0.005045 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.799283 B = 5548.706831 C = 5735.297157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.603 5.603 3 C 0.540 3.460 4 O -0.543 6.543 5 C -0.194 4.194 6 C -0.152 4.152 7 C -0.151 4.151 8 C 0.143 3.857 9 H 0.105 0.895 10 C -0.113 4.113 11 C -0.137 4.137 12 C 0.146 3.854 13 N -0.600 5.600 14 C -0.267 4.267 15 H 0.074 0.926 16 C 0.041 3.959 17 N -0.898 5.898 18 Si 0.876 3.124 19 H -0.286 1.286 20 H -0.301 1.301 21 H -0.269 1.269 22 C 0.138 3.862 23 C -0.136 4.136 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.263 0.737 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.066 0.934 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.042 19.264 -0.602 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.335 5.335 3 C 0.328 3.672 4 O -0.420 6.420 5 C -0.215 4.215 6 C -0.189 4.189 7 C -0.188 4.188 8 C 0.041 3.959 9 H 0.123 0.877 10 C -0.152 4.152 11 C -0.178 4.178 12 C 0.018 3.982 13 N -0.323 5.323 14 C -0.396 4.396 15 H 0.092 0.908 16 C -0.160 4.160 17 N -0.538 5.538 18 Si 0.706 3.294 19 H -0.213 1.213 20 H -0.229 1.229 21 H -0.194 1.194 22 C 0.014 3.986 23 C -0.176 4.176 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.141 0.859 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.378 19.042 -0.577 20.090 hybrid contribution 0.740 -0.040 0.246 0.781 sum -5.638 19.002 -0.331 19.824 Atomic orbital electron populations 1.21761 0.79957 1.02937 1.01830 1.47972 1.06879 1.06011 1.72650 1.19633 0.87348 0.84386 0.75869 1.90683 1.13891 1.87182 1.50251 1.22261 1.02547 0.91102 1.05541 1.22916 1.03081 1.01499 0.91453 1.22951 1.00180 0.95351 1.00319 1.20520 0.97902 0.81198 0.96243 0.87684 1.21713 0.99577 0.97676 0.96186 1.22701 0.96949 0.98710 0.99410 1.20688 0.93120 0.96129 0.88234 1.44181 1.68997 1.06179 1.12908 1.18686 0.99471 0.80069 1.41361 0.90797 1.25517 0.97725 0.94841 0.97905 1.69889 1.34683 1.06940 1.42334 0.86923 0.87728 0.76816 0.77978 1.21334 1.22945 1.19408 1.20376 0.95100 0.91792 0.91318 1.21275 1.01653 0.97870 0.96773 0.92598 0.90695 0.91396 0.85922 0.88291 0.87934 0.88105 0.87453 0.93482 0.91111 0.91837 0.93252 0.93946 0.95217 0.92733 0.91171 0.95020 0.91535 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.56 59.85 0.57 1.36 16 2 N -0.60 -8.45 2.63 -175.86 -0.46 -8.91 16 3 C 0.54 7.96 7.46 -10.99 -0.08 7.87 16 4 O -0.54 -10.18 15.61 5.56 0.09 -10.10 16 5 C -0.19 -2.00 5.29 -91.77 -0.49 -2.49 16 6 C -0.15 -1.32 10.24 -26.69 -0.27 -1.60 16 7 C -0.15 -1.42 10.05 -26.69 -0.27 -1.69 16 8 C 0.14 2.41 2.30 -69.60 -0.16 2.25 16 9 H 0.11 2.06 5.11 -51.93 -0.27 1.80 16 10 C -0.11 -1.94 4.30 -27.30 -0.12 -2.06 16 11 C -0.14 -2.68 6.40 -24.87 -0.16 -2.84 16 12 C 0.15 3.29 4.22 -4.66 -0.02 3.27 16 13 N -0.60 -14.22 2.14 -175.09 -0.37 -14.59 16 14 C -0.27 -7.39 9.92 -15.06 -0.15 -7.54 16 15 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 16 C 0.04 1.19 5.28 -17.43 -0.09 1.09 16 17 N -0.90 -27.29 13.97 55.49 0.78 -26.52 16 18 Si 0.88 22.65 25.26 -169.99 -4.29 18.36 16 19 H -0.29 -7.25 6.73 56.52 0.38 -6.87 16 20 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 21 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.14 2.76 6.11 -5.20 -0.03 2.73 16 23 C -0.14 -2.30 4.37 -30.19 -0.13 -2.44 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.76 7.22 -51.92 -0.38 0.39 16 26 H 0.07 0.52 6.00 -51.93 -0.31 0.21 16 27 H 0.12 0.98 6.44 -51.93 -0.33 0.65 16 28 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.11 1.21 7.67 -51.93 -0.40 0.81 16 32 H 0.05 0.73 7.87 -51.93 -0.41 0.33 16 33 H 0.07 1.28 6.84 -51.92 -0.36 0.93 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.04 1.05 3.40 -51.93 -0.18 0.88 16 37 H 0.03 0.64 6.88 -51.93 -0.36 0.28 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.07 1.38 7.99 -51.93 -0.42 0.96 16 40 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 41 H 0.07 1.16 6.94 -51.93 -0.36 0.80 16 42 H 0.05 0.73 8.02 -51.93 -0.42 0.31 16 LS Contribution 319.79 15.07 4.82 4.82 Total: -1.00 -32.24 319.79 -7.56 -39.80 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.71 Total: -0.79 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.40 Total: -2.07 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.06 Total: -50.02 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.29 Total: 18.36 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.24 -7.56 -39.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948123976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.444 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds