Wall clock time and date at job start Mon Mar 30 2020 00:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34773 * 120.00005 * 2 1 4 4 O 1.21278 * 120.00146 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99970 * 359.72561 * 3 2 1 6 6 C 1.52998 * 117.50453 * 248.74770 * 5 3 2 7 7 C 1.52998 * 117.49928 * 180.08480 * 5 3 2 8 8 C 1.46498 * 119.99883 * 180.02562 * 2 1 3 9 9 H 1.09002 * 110.21344 * 179.97438 * 8 2 1 10 10 C 1.50128 * 110.24695 * 301.92798 * 8 2 1 11 11 C 1.54635 * 110.92823 * 216.54718 * 10 8 2 12 12 C 1.54900 * 110.19040 * 321.33646 * 11 10 8 13 13 N 1.43434 * 116.08080 * 318.53021 * 12 11 10 14 14 C 1.36931 * 120.53821 * 271.59054 * 13 12 11 15 15 H 1.08001 * 120.00287 * 140.20587 * 14 13 12 16 16 C 1.38817 * 119.99899 * 320.20539 * 14 13 12 17 17 N 1.31618 * 120.00244 * 156.34845 * 16 14 13 18 18 Si 1.86797 * 119.99672 * 336.34529 * 16 14 13 19 19 H 1.48496 * 109.47169 * 95.57661 * 18 16 14 20 20 H 1.48505 * 109.47075 * 215.57189 * 18 16 14 21 21 H 1.48497 * 109.47316 * 335.57159 * 18 16 14 22 22 C 1.50168 * 118.92576 * 91.56163 * 13 12 11 23 23 C 1.46239 * 107.53650 * 289.59126 * 22 13 12 24 24 H 1.09001 * 109.47535 * 89.99927 * 1 2 3 25 25 H 1.09007 * 109.46906 * 210.00001 * 1 2 3 26 26 H 1.09004 * 109.47019 * 329.99585 * 1 2 3 27 27 H 1.09001 * 115.55000 * 34.42249 * 5 3 2 28 28 H 1.09010 * 117.49329 * 359.97438 * 6 5 3 29 29 H 1.08994 * 117.50104 * 145.01955 * 6 5 3 30 30 H 1.08997 * 117.49946 * 214.98124 * 7 5 3 31 31 H 1.09000 * 117.49969 * 359.97438 * 7 5 3 32 32 H 1.08994 * 109.21075 * 336.99907 * 10 8 2 33 33 H 1.09008 * 109.20815 * 96.31861 * 10 8 2 34 34 H 1.09005 * 109.42846 * 201.06311 * 11 10 8 35 35 H 1.08998 * 109.13782 * 81.42987 * 11 10 8 36 36 H 1.08997 * 108.16044 * 196.81321 * 12 11 10 37 37 H 1.08994 * 108.00171 * 80.11977 * 12 11 10 38 38 H 0.96997 * 120.00513 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.84633 * 170.08376 * 22 13 12 40 40 H 1.08998 * 109.90052 * 49.13553 * 22 13 12 41 41 H 1.08994 * 108.52070 * 297.16740 * 23 22 13 42 42 H 1.08999 * 108.52032 * 179.64552 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0063 6 6 1.4633 3.3271 -1.2727 7 6 2.2075 3.7626 -0.0079 8 6 2.1975 -1.2687 -0.0006 9 1 3.2716 -1.0835 -0.0009 10 6 1.8121 -2.0916 1.1945 11 6 3.0307 -2.8661 1.7480 12 6 3.9092 -3.3845 0.5823 13 7 3.2062 -3.9228 -0.5461 14 6 2.8618 -5.2475 -0.5839 15 1 1.9018 -5.5449 -0.9795 16 6 3.7466 -6.2084 -0.1138 17 7 3.2956 -7.3774 0.2891 18 14 5.5773 -5.8421 -0.0532 19 1 5.9426 -5.3685 1.3060 20 1 6.3398 -7.0768 -0.3686 21 1 5.9049 -4.7901 -1.0487 22 6 2.8533 -3.0099 -1.6850 23 6 1.8058 -2.1039 -1.2153 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 0.4455 2.4751 0.5458 28 1 2.0601 2.9456 -2.1014 29 1 0.5749 3.8925 -1.5538 30 1 1.8082 4.6144 0.5425 31 1 3.2933 3.6676 -0.0041 32 1 1.4211 -1.4347 1.9713 33 1 1.0392 -2.8038 0.9054 34 1 2.6837 -3.7114 2.3423 35 1 3.6215 -2.2004 2.3772 36 1 4.5690 -4.1593 0.9726 37 1 4.5285 -2.5579 0.2338 38 1 3.9137 -8.0486 0.6179 39 1 2.4857 -3.5950 -2.5280 40 1 3.7301 -2.4370 -1.9867 41 1 0.9259 -2.6945 -0.9603 42 1 1.5415 -1.4287 -2.0291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948123976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:52 Heat of formation + Delta-G solvation = 4.837854 kcal Electronic energy + Delta-G solvation = -21486.727355 eV Core-core repulsion = 18467.952123 eV Total energy + Delta-G solvation = -3018.775232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.46629 -39.68354 -37.22627 -36.65143 -34.55561 -33.49258 -32.68723 -28.32617 -27.80211 -26.52085 -25.13640 -24.39723 -23.28298 -21.62605 -20.95649 -19.86648 -18.57691 -18.42262 -17.72351 -16.89196 -16.57405 -16.18573 -15.68065 -15.53841 -15.29812 -14.93081 -14.70159 -14.34621 -14.09905 -13.67089 -13.60188 -13.56767 -13.20390 -13.03434 -12.73045 -12.54689 -12.39710 -12.32052 -11.92382 -11.85746 -11.60501 -11.47928 -11.45038 -11.39164 -11.22351 -10.75752 -10.57162 -9.62164 -8.71417 -8.22371 -5.60749 1.28872 1.37961 1.49553 1.49786 1.97249 2.41024 2.95317 3.00990 3.27993 3.53091 3.77661 3.85941 3.99328 4.02245 4.09838 4.13947 4.33198 4.37313 4.39579 4.48534 4.64552 4.68851 4.76172 4.77262 4.86707 4.91407 4.95506 4.99219 5.04358 5.07918 5.10245 5.17128 5.25474 5.26148 5.37905 5.42434 5.66526 5.95515 6.16938 6.45908 6.99004 7.18901 7.61469 8.09996 8.97077 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035715 B = 0.005045 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.799283 B = 5548.706831 C = 5735.297157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.602 5.602 3 C 0.530 3.470 4 O -0.594 6.594 5 C -0.198 4.198 6 C -0.138 4.138 7 C -0.155 4.155 8 C 0.151 3.849 9 H 0.077 0.923 10 C -0.102 4.102 11 C -0.134 4.134 12 C 0.142 3.858 13 N -0.610 5.610 14 C -0.252 4.252 15 H 0.046 0.954 16 C -0.008 4.008 17 N -0.941 5.941 18 Si 0.932 3.068 19 H -0.280 1.280 20 H -0.304 1.304 21 H -0.267 1.267 22 C 0.138 3.862 23 C -0.126 4.126 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.155 0.845 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.130 0.870 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.019 0.981 37 H 0.038 0.962 38 H 0.263 0.737 39 H 0.070 0.930 40 H 0.036 0.964 41 H 0.063 0.937 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.464 22.198 -0.663 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.333 5.333 3 C 0.320 3.680 4 O -0.475 6.475 5 C -0.218 4.218 6 C -0.175 4.175 7 C -0.192 4.192 8 C 0.047 3.953 9 H 0.095 0.905 10 C -0.140 4.140 11 C -0.175 4.175 12 C 0.015 3.985 13 N -0.334 5.334 14 C -0.382 4.382 15 H 0.064 0.936 16 C -0.205 4.205 17 N -0.585 5.585 18 Si 0.762 3.238 19 H -0.208 1.208 20 H -0.232 1.232 21 H -0.192 1.192 22 C 0.015 3.985 23 C -0.165 4.165 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.173 0.827 28 H 0.100 0.900 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.831 22.017 -0.646 23.377 hybrid contribution 1.135 -0.892 0.231 1.462 sum -6.696 21.125 -0.415 22.165 Atomic orbital electron populations 1.22052 0.77205 1.04478 1.03278 1.48012 1.08456 1.04736 1.72082 1.20465 0.87060 0.85819 0.74638 1.90660 1.16319 1.87975 1.52566 1.22309 1.03303 0.88737 1.07454 1.23025 1.03767 1.00418 0.90276 1.23023 0.98826 0.95871 1.01476 1.20160 0.96858 0.82552 0.95725 0.90478 1.21590 0.97967 0.97498 0.96958 1.22615 0.97789 0.98776 0.98273 1.20725 0.93473 0.95534 0.88759 1.44288 1.69073 1.05373 1.14620 1.18591 0.98164 0.81902 1.39509 0.93630 1.26011 1.01029 0.94862 0.98626 1.69984 1.35762 1.08139 1.44592 0.86006 0.83447 0.76271 0.78124 1.20764 1.23244 1.19192 1.20510 0.96192 0.91582 0.90251 1.21065 1.00159 0.97621 0.97659 0.91193 0.90828 0.88261 0.82735 0.89991 0.84538 0.85203 0.90211 0.91460 0.92095 0.93419 0.91527 0.96294 0.94404 0.92783 0.91193 0.94555 0.91799 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 9.56 127.77 1.22 2.39 16 2 N -0.60 -15.35 2.63 -828.69 -2.18 -17.53 16 3 C 0.53 14.60 7.46 87.66 0.65 15.25 16 4 O -0.59 -22.15 15.61 -3.02 -0.05 -22.20 16 5 C -0.20 -3.40 5.29 -11.54 -0.06 -3.46 16 6 C -0.14 -1.92 10.24 30.62 0.31 -1.61 16 7 C -0.15 -2.50 10.05 30.62 0.31 -2.19 16 8 C 0.15 4.84 2.30 43.91 0.10 4.94 16 9 H 0.08 2.98 5.11 -2.39 -0.01 2.97 16 10 C -0.10 -3.35 4.30 30.23 0.13 -3.22 16 11 C -0.13 -5.16 6.40 31.80 0.20 -4.96 16 12 C 0.14 6.39 4.22 87.60 0.37 6.76 16 13 N -0.61 -28.93 2.14 -707.85 -1.51 -30.44 16 14 C -0.25 -14.17 9.92 84.04 0.83 -13.34 16 15 H 0.05 2.79 8.06 -2.91 -0.02 2.77 16 16 C -0.01 -0.46 5.28 84.86 0.45 -0.02 16 17 N -0.94 -58.64 13.97 21.65 0.30 -58.33 16 18 Si 0.93 47.67 25.26 68.60 1.73 49.40 16 19 H -0.28 -13.95 6.73 99.48 0.67 -13.28 16 20 H -0.30 -15.54 7.11 99.48 0.71 -14.84 16 21 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 22 C 0.14 5.40 6.11 83.58 0.51 5.91 16 23 C -0.13 -4.06 4.37 28.36 0.12 -3.94 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.25 7.22 -2.38 -0.02 1.23 16 26 H 0.10 1.01 6.00 -2.39 -0.01 1.00 16 27 H 0.16 1.64 6.44 -2.39 -0.02 1.63 16 28 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.75 7.67 -2.39 -0.02 1.74 16 32 H 0.07 1.94 7.87 -2.39 -0.02 1.92 16 33 H 0.06 2.14 6.84 -2.38 -0.02 2.12 16 34 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.02 0.94 3.40 -2.39 -0.01 0.94 16 37 H 0.04 1.63 6.88 -2.39 -0.02 1.61 16 38 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.07 2.71 7.99 -2.39 -0.02 2.69 16 40 H 0.04 1.40 8.13 -2.39 -0.02 1.38 16 41 H 0.06 2.13 6.94 -2.39 -0.02 2.11 16 42 H 0.07 1.96 8.02 -2.39 -0.02 1.94 16 Total: -1.00 -72.03 319.79 4.41 -67.62 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.96 Total: 8.98 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.16 Total: 2.51 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -3.39 Total: -106.31 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.20 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.73 Total: 49.40 kcal Total: -72.03 4.41 -67.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948123976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.458 kcal (2) G-P(sol) polarization free energy of solvation -72.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds