Wall clock time and date at job start Mon Mar 30 2020 00:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36935 * 119.99633 * 2 1 4 4 H 1.07997 * 119.99665 * 203.41813 * 3 2 1 5 5 C 1.38808 * 120.00330 * 23.42883 * 3 2 1 6 6 N 1.31623 * 120.00217 * 14.48389 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 194.48919 * 5 3 2 8 8 H 1.48498 * 109.47221 * 89.99923 * 7 5 3 9 9 H 1.48502 * 109.47199 * 209.99651 * 7 5 3 10 10 H 1.48504 * 109.47312 * 329.99532 * 7 5 3 11 11 C 1.46493 * 120.00040 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.64492 * 179.30181 * 11 2 1 13 13 C 1.55158 * 110.72485 * 56.15255 * 11 2 1 14 14 C 1.54913 * 101.58284 * 206.13876 * 13 11 2 15 15 N 1.47419 * 104.83206 * 37.01168 * 14 13 11 16 16 C 1.34775 * 125.64943 * 155.83898 * 15 14 13 17 17 O 1.21280 * 120.00039 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00125 * 0.02562 * 16 15 14 19 19 C 1.54270 * 110.03143 * 297.16954 * 18 16 15 20 20 C 1.54890 * 104.19595 * 217.10078 * 19 18 16 21 21 C 1.54897 * 102.74603 * 37.94401 * 20 19 18 22 22 C 1.53869 * 110.03504 * 180.02562 * 18 16 15 23 23 C 1.47321 * 108.73745 * 335.71374 * 15 14 13 24 24 H 1.08998 * 109.46734 * 275.18254 * 1 2 3 25 25 H 1.09004 * 109.47019 * 35.18461 * 1 2 3 26 26 H 1.08994 * 109.46939 * 155.18276 * 1 2 3 27 27 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 28 28 H 1.09002 * 111.00051 * 324.21351 * 13 11 2 29 29 H 1.08994 * 111.00427 * 88.06015 * 13 11 2 30 30 H 1.08994 * 110.36347 * 155.84833 * 14 13 11 31 31 H 1.08997 * 110.36482 * 278.16701 * 14 13 11 32 32 H 1.09000 * 110.01633 * 58.60683 * 18 16 15 33 33 H 1.08999 * 110.48248 * 335.78105 * 19 18 16 34 34 H 1.09003 * 110.48366 * 98.42408 * 19 18 16 35 35 H 1.08998 * 110.75675 * 279.63326 * 20 19 18 36 36 H 1.09001 * 110.75226 * 156.25084 * 20 19 18 37 37 H 1.08998 * 110.48295 * 203.37938 * 21 20 19 38 38 H 1.08997 * 110.48847 * 80.73449 * 21 20 19 39 39 H 1.09000 * 110.03168 * 238.57267 * 22 18 16 40 40 H 1.09001 * 110.03104 * 359.97438 * 22 18 16 41 41 H 1.09005 * 110.06611 * 241.87605 * 23 15 14 42 42 H 1.08997 * 109.85055 * 120.61764 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1629 1.2245 -0.3717 5 6 1.5415 2.3385 0.4780 6 7 0.4349 2.2537 1.1856 7 14 2.2933 4.0099 0.1168 8 1 1.7349 4.5399 -1.1531 9 1 1.9761 4.9455 1.2256 10 1 3.7667 3.8732 -0.0092 11 6 2.1976 -1.2687 -0.0006 12 1 3.2729 -1.0915 -0.0129 13 6 1.7721 -2.1478 -1.2062 14 6 2.0756 -3.5712 -0.6757 15 7 1.7186 -3.5252 0.7539 16 6 1.3768 -4.5853 1.5127 17 8 1.1006 -4.4294 2.6833 18 6 1.3379 -5.9646 0.9066 19 6 0.2700 -6.0233 -0.2051 20 6 -0.3448 -7.4382 -0.0670 21 6 -0.3834 -7.6457 1.4676 22 6 0.9219 -6.9960 1.9699 23 6 1.8000 -2.1292 1.2173 24 1 -0.3633 0.0928 1.0235 25 1 -0.3633 0.8399 -0.5922 26 1 -0.3633 -0.9327 -0.4313 27 1 0.0101 3.0591 1.5199 28 1 0.7100 -2.0290 -1.4208 29 1 2.3744 -1.9221 -2.0861 30 1 1.4640 -4.3083 -1.1958 31 1 3.1340 -3.8029 -0.7952 32 1 2.3160 -6.2210 0.4997 33 1 -0.4907 -5.2594 -0.0440 34 1 0.7322 -5.9021 -1.1848 35 1 0.2925 -8.1843 -0.5417 36 1 -1.3508 -7.4648 -0.4857 37 1 -0.3980 -8.7087 1.7084 38 1 -1.2496 -7.1439 1.8987 39 1 1.6979 -7.7537 2.0788 40 1 0.7486 -6.4991 2.9245 41 1 2.5550 -2.0377 1.9982 42 1 0.8301 -1.8082 1.5973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970935430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:08 Heat of formation + Delta-G solvation = -19.115958 kcal Electronic energy + Delta-G solvation = -21088.675050 eV Core-core repulsion = 18068.861102 eV Total energy + Delta-G solvation = -3019.813948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.15210 -37.93648 -36.67672 -34.77968 -31.71366 -29.92343 -29.38338 -28.79774 -27.45277 -26.03762 -23.82340 -22.41770 -21.03511 -20.77716 -19.18517 -18.61030 -17.23412 -17.02559 -15.84413 -15.62070 -15.29819 -14.83295 -14.10889 -13.93850 -13.51387 -13.41247 -13.27384 -12.64284 -12.40920 -12.21826 -12.00274 -11.69821 -11.49859 -11.35225 -11.18031 -11.06204 -10.92662 -10.87130 -10.80216 -10.58998 -10.54256 -10.47594 -10.25538 -9.88070 -9.82060 -9.43745 -8.58450 -8.24797 -6.81334 -5.76701 -3.25057 2.90709 3.28481 3.37021 3.43265 3.44616 4.38661 4.45031 4.50337 4.62761 4.96052 5.03734 5.23800 5.27225 5.32164 5.35801 5.40175 5.47216 5.55490 5.58003 5.61959 5.71974 5.79468 5.82213 5.90220 5.98781 6.03796 6.07359 6.19749 6.30011 6.35053 6.38871 6.57284 6.70376 6.82641 6.88080 7.30620 7.70323 7.76977 7.89214 8.34246 8.47520 9.17590 9.80353 10.29780 11.27445 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041628 B = 0.004167 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.461363 B = 6718.303679 C = 6851.437028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.264 4.264 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.902 5.902 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.172 3.828 12 H 0.077 0.923 13 C -0.153 4.153 14 C 0.095 3.905 15 N -0.612 5.612 16 C 0.527 3.473 17 O -0.546 6.546 18 C -0.109 4.109 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.119 4.119 23 C 0.087 3.913 24 H 0.032 0.968 25 H 0.041 0.959 26 H 0.003 0.997 27 H 0.254 0.746 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -17.950 -5.380 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.546 5.546 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.193 4.193 14 C -0.028 4.028 15 N -0.345 5.345 16 C 0.315 3.685 17 O -0.424 6.424 18 C -0.130 4.130 19 C -0.153 4.153 20 C -0.161 4.161 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.037 4.037 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.021 0.979 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.601 -17.725 -4.618 18.326 hybrid contribution 0.397 1.021 -0.121 1.102 sum 0.998 -16.703 -4.739 17.391 Atomic orbital electron populations 1.20791 0.82549 0.95558 0.99636 1.43915 1.01833 0.99928 1.84876 1.19223 0.98938 0.85278 1.35859 0.91186 1.25062 0.98024 0.98674 0.97566 1.70080 1.20575 1.27474 1.36476 0.86230 0.78725 0.83965 0.77438 1.21431 1.21731 1.20408 1.21365 0.96360 0.85953 0.90153 0.90436 1.23343 1.02739 0.93246 0.99979 1.22476 0.99789 0.99247 0.81321 1.48605 1.66918 1.07931 1.11083 1.20225 0.76593 0.85704 0.85991 1.90655 1.49680 1.85489 1.16601 1.21890 1.01033 0.92720 0.97354 1.22427 0.97482 0.97995 0.97418 1.22511 1.00745 0.96383 0.96461 1.22354 0.98103 1.00257 0.95424 1.22152 0.97112 0.96770 0.99683 1.22947 1.02310 0.79026 0.99457 0.94923 0.94044 0.97880 0.93600 0.90516 0.90478 0.90752 0.91838 0.88817 0.90997 0.90708 0.91367 0.91406 0.91685 0.91522 0.91686 0.89196 0.92291 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 7.70 59.85 0.46 4.33 16 2 N -0.59 -14.29 2.93 -171.39 -0.50 -14.79 16 3 C -0.26 -7.08 9.59 -15.06 -0.14 -7.23 16 4 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 5 C 0.01 0.16 5.07 -17.43 -0.09 0.08 16 6 N -0.90 -26.22 10.82 55.49 0.60 -25.62 16 7 Si 0.91 21.58 29.58 -169.99 -5.03 16.55 16 8 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 C 0.17 3.40 3.43 -66.10 -0.23 3.18 16 12 H 0.08 1.52 7.93 -51.93 -0.41 1.10 16 13 C -0.15 -2.39 6.60 -24.58 -0.16 -2.55 16 14 C 0.09 1.24 6.61 -2.53 -0.02 1.22 16 15 N -0.61 -10.11 3.33 -170.28 -0.57 -10.67 16 16 C 0.53 8.77 7.05 -10.99 -0.08 8.70 16 17 O -0.55 -11.29 15.54 5.56 0.09 -11.20 16 18 C -0.11 -1.30 2.77 -90.65 -0.25 -1.55 16 19 C -0.12 -1.18 5.03 -25.07 -0.13 -1.31 16 20 C -0.12 -1.07 6.91 -24.73 -0.17 -1.24 16 21 C -0.12 -1.20 6.83 -25.09 -0.17 -1.37 16 22 C -0.12 -1.37 6.40 -25.64 -0.16 -1.53 16 23 C 0.09 1.73 6.53 -2.90 -0.02 1.71 16 24 H 0.03 0.88 7.25 -51.93 -0.38 0.50 16 25 H 0.04 1.07 7.41 -51.93 -0.38 0.69 16 26 H 0.00 0.06 6.20 -51.93 -0.32 -0.26 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.08 1.28 6.21 -51.93 -0.32 0.95 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 0.80 4.97 -51.93 -0.26 0.54 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 34 H 0.07 0.64 6.58 -51.93 -0.34 0.30 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.28 6.39 -51.93 -0.33 0.95 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.65 7.01 -51.93 -0.36 1.29 16 LS Contribution 321.28 15.07 4.84 4.84 Total: -1.00 -31.10 321.28 -8.60 -39.69 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.87 Total: -1.24 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.16 Total: 2.44 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.47 Total: -51.08 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.10 -8.60 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970935430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.579 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds