Wall clock time and date at job start Mon Mar 30 2020 00:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36935 * 119.99633 * 2 1 4 4 H 1.07997 * 119.99665 * 203.41813 * 3 2 1 5 5 C 1.38808 * 120.00330 * 23.42883 * 3 2 1 6 6 N 1.31623 * 120.00217 * 14.48389 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 194.48919 * 5 3 2 8 8 H 1.48498 * 109.47221 * 89.99923 * 7 5 3 9 9 H 1.48502 * 109.47199 * 209.99651 * 7 5 3 10 10 H 1.48504 * 109.47312 * 329.99532 * 7 5 3 11 11 C 1.46493 * 120.00040 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.64492 * 179.30181 * 11 2 1 13 13 C 1.55158 * 110.72485 * 56.15255 * 11 2 1 14 14 C 1.54913 * 101.58284 * 206.13876 * 13 11 2 15 15 N 1.47419 * 104.83206 * 37.01168 * 14 13 11 16 16 C 1.34775 * 125.64943 * 155.83898 * 15 14 13 17 17 O 1.21280 * 120.00039 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00125 * 0.02562 * 16 15 14 19 19 C 1.54270 * 110.03143 * 297.16954 * 18 16 15 20 20 C 1.54890 * 104.19595 * 217.10078 * 19 18 16 21 21 C 1.54897 * 102.74603 * 37.94401 * 20 19 18 22 22 C 1.53869 * 110.03504 * 180.02562 * 18 16 15 23 23 C 1.47321 * 108.73745 * 335.71374 * 15 14 13 24 24 H 1.08998 * 109.46734 * 275.18254 * 1 2 3 25 25 H 1.09004 * 109.47019 * 35.18461 * 1 2 3 26 26 H 1.08994 * 109.46939 * 155.18276 * 1 2 3 27 27 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 28 28 H 1.09002 * 111.00051 * 324.21351 * 13 11 2 29 29 H 1.08994 * 111.00427 * 88.06015 * 13 11 2 30 30 H 1.08994 * 110.36347 * 155.84833 * 14 13 11 31 31 H 1.08997 * 110.36482 * 278.16701 * 14 13 11 32 32 H 1.09000 * 110.01633 * 58.60683 * 18 16 15 33 33 H 1.08999 * 110.48248 * 335.78105 * 19 18 16 34 34 H 1.09003 * 110.48366 * 98.42408 * 19 18 16 35 35 H 1.08998 * 110.75675 * 279.63326 * 20 19 18 36 36 H 1.09001 * 110.75226 * 156.25084 * 20 19 18 37 37 H 1.08998 * 110.48295 * 203.37938 * 21 20 19 38 38 H 1.08997 * 110.48847 * 80.73449 * 21 20 19 39 39 H 1.09000 * 110.03168 * 238.57267 * 22 18 16 40 40 H 1.09001 * 110.03104 * 359.97438 * 22 18 16 41 41 H 1.09005 * 110.06611 * 241.87605 * 23 15 14 42 42 H 1.08997 * 109.85055 * 120.61764 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1629 1.2245 -0.3717 5 6 1.5415 2.3385 0.4780 6 7 0.4349 2.2537 1.1856 7 14 2.2933 4.0099 0.1168 8 1 1.7349 4.5399 -1.1531 9 1 1.9761 4.9455 1.2256 10 1 3.7667 3.8732 -0.0092 11 6 2.1976 -1.2687 -0.0006 12 1 3.2729 -1.0915 -0.0129 13 6 1.7721 -2.1478 -1.2062 14 6 2.0756 -3.5712 -0.6757 15 7 1.7186 -3.5252 0.7539 16 6 1.3768 -4.5853 1.5127 17 8 1.1006 -4.4294 2.6833 18 6 1.3379 -5.9646 0.9066 19 6 0.2700 -6.0233 -0.2051 20 6 -0.3448 -7.4382 -0.0670 21 6 -0.3834 -7.6457 1.4676 22 6 0.9219 -6.9960 1.9699 23 6 1.8000 -2.1292 1.2173 24 1 -0.3633 0.0928 1.0235 25 1 -0.3633 0.8399 -0.5922 26 1 -0.3633 -0.9327 -0.4313 27 1 0.0101 3.0591 1.5199 28 1 0.7100 -2.0290 -1.4208 29 1 2.3744 -1.9221 -2.0861 30 1 1.4640 -4.3083 -1.1958 31 1 3.1340 -3.8029 -0.7952 32 1 2.3160 -6.2210 0.4997 33 1 -0.4907 -5.2594 -0.0440 34 1 0.7322 -5.9021 -1.1848 35 1 0.2925 -8.1843 -0.5417 36 1 -1.3508 -7.4648 -0.4857 37 1 -0.3980 -8.7087 1.7084 38 1 -1.2496 -7.1439 1.8987 39 1 1.6979 -7.7537 2.0788 40 1 0.7486 -6.4991 2.9245 41 1 2.5550 -2.0377 1.9982 42 1 0.8301 -1.8082 1.5973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970935430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:07 Heat of formation + Delta-G solvation = -38.134955 kcal Electronic energy + Delta-G solvation = -21089.499776 eV Core-core repulsion = 18068.861102 eV Total energy + Delta-G solvation = -3020.638673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.41369 -39.27707 -37.83541 -36.55713 -33.52164 -31.44838 -30.51714 -29.62574 -28.84161 -28.07560 -25.39590 -23.99756 -22.06618 -21.58694 -20.82913 -19.76783 -18.95736 -18.39522 -17.43570 -16.75965 -16.54437 -16.37948 -15.61187 -15.14635 -14.99264 -14.86361 -14.43581 -14.26713 -13.97173 -13.64978 -13.38491 -13.16695 -12.78593 -12.63570 -12.54120 -12.41910 -12.25466 -12.21930 -12.10552 -12.02306 -11.88988 -11.76943 -11.66085 -11.40328 -11.33411 -10.77782 -10.65297 -9.64733 -8.83312 -7.85248 -5.36464 1.47513 1.48175 1.57470 1.61656 1.98732 2.50520 3.26615 3.43660 3.56528 3.65171 3.74514 3.84604 4.01736 4.23532 4.27894 4.35177 4.46713 4.47694 4.51900 4.58386 4.66073 4.69531 4.76414 4.83027 4.89708 4.98357 5.04955 5.10606 5.16667 5.18687 5.25413 5.27334 5.29219 5.40921 5.48112 5.49469 5.63107 5.65614 6.29412 6.60164 7.09978 7.16066 7.81455 8.26928 9.17628 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041628 B = 0.004167 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.461363 B = 6718.303679 C = 6851.437028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.601 5.601 3 C -0.269 4.269 4 H 0.080 0.920 5 C -0.053 4.053 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.264 1.264 11 C 0.165 3.835 12 H 0.082 0.918 13 C -0.140 4.140 14 C 0.100 3.900 15 N -0.612 5.612 16 C 0.518 3.482 17 O -0.599 6.599 18 C -0.100 4.100 19 C -0.115 4.115 20 C -0.115 4.115 21 C -0.125 4.125 22 C -0.123 4.123 23 C 0.097 3.903 24 H -0.005 1.005 25 H 0.017 0.983 26 H 0.032 0.968 27 H 0.248 0.752 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.047 0.953 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.039 0.961 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.436 -20.384 -8.264 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.322 5.322 3 C -0.399 4.399 4 H 0.097 0.903 5 C -0.248 4.248 6 N -0.586 5.586 7 Si 0.801 3.199 8 H -0.210 1.210 9 H -0.227 1.227 10 H -0.189 1.189 11 C 0.056 3.944 12 H 0.100 0.900 13 C -0.179 4.179 14 C -0.022 4.022 15 N -0.345 5.345 16 C 0.308 3.692 17 O -0.480 6.480 18 C -0.121 4.121 19 C -0.153 4.153 20 C -0.152 4.152 21 C -0.162 4.162 22 C -0.160 4.160 23 C -0.029 4.029 24 H 0.013 0.987 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.143 0.857 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.189 -20.207 -7.553 21.683 hybrid contribution -0.067 1.708 0.833 1.902 sum 2.121 -18.499 -6.720 19.796 Atomic orbital electron populations 1.20435 0.83095 0.95908 0.97097 1.44114 1.01843 1.01141 1.85115 1.19646 0.99274 0.86332 1.34611 0.90262 1.25883 0.98735 1.02257 0.97911 1.70270 1.22303 1.27807 1.38232 0.85186 0.78601 0.79423 0.76737 1.21036 1.22656 1.18875 1.21587 0.96194 0.84678 0.91936 0.89970 1.23221 1.02438 0.93546 0.98705 1.22731 1.02318 0.98339 0.78782 1.48691 1.66780 1.06262 1.12747 1.21258 0.75097 0.87354 0.85451 1.90636 1.51766 1.86469 1.19175 1.22004 1.03335 0.88976 0.97803 1.22470 0.96463 0.98486 0.97845 1.22509 1.01688 0.95729 0.95291 1.22368 0.96289 1.01016 0.96555 1.22180 0.98884 0.97044 0.97938 1.22516 0.99372 0.81807 0.99179 0.98713 0.96381 0.94952 0.94311 0.91548 0.87965 0.87376 0.88790 0.85727 0.93429 0.87867 0.88900 0.90594 0.89724 0.93447 0.89475 0.92894 0.94210 0.95036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.06 7.70 127.77 0.98 10.04 16 2 N -0.60 -29.76 2.93 -696.15 -2.04 -31.80 16 3 C -0.27 -14.53 9.59 84.03 0.81 -13.73 16 4 H 0.08 4.06 7.85 -2.91 -0.02 4.04 16 5 C -0.05 -2.95 5.07 84.86 0.43 -2.52 16 6 N -0.94 -56.86 10.82 21.65 0.23 -56.62 16 7 Si 0.97 44.92 29.58 68.60 2.03 46.94 16 8 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 9 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 C 0.16 6.41 3.43 46.18 0.16 6.57 16 12 H 0.08 3.11 7.93 -2.39 -0.02 3.09 16 13 C -0.14 -3.94 6.60 31.99 0.21 -3.73 16 14 C 0.10 2.20 6.61 86.86 0.57 2.78 16 15 N -0.61 -19.57 3.33 -811.04 -2.70 -22.27 16 16 C 0.52 17.03 7.05 87.66 0.62 17.65 16 17 O -0.60 -25.91 15.54 -3.03 -0.05 -25.96 16 18 C -0.10 -2.12 2.77 -10.82 -0.03 -2.15 16 19 C -0.12 -1.93 5.03 31.67 0.16 -1.77 16 20 C -0.11 -1.53 6.91 31.89 0.22 -1.31 16 21 C -0.12 -2.15 6.83 31.65 0.22 -1.94 16 22 C -0.12 -2.62 6.40 31.30 0.20 -2.42 16 23 C 0.10 3.97 6.53 86.67 0.57 4.54 16 24 H -0.01 -0.31 7.25 -2.39 -0.02 -0.33 16 25 H 0.02 0.95 7.41 -2.39 -0.02 0.94 16 26 H 0.03 1.40 6.20 -2.39 -0.01 1.38 16 27 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.07 2.04 6.21 -2.39 -0.01 2.02 16 29 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.11 1.73 4.97 -2.39 -0.01 1.72 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.05 7.85 -2.39 -0.02 1.03 16 34 H 0.10 1.16 6.58 -2.39 -0.02 1.15 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 1.55 6.39 -2.39 -0.02 1.53 16 41 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.03 1.53 7.01 -2.39 -0.02 1.51 16 Total: -1.00 -72.76 321.28 3.58 -69.18 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.99 Total: 8.51 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 5.11 Total: 12.02 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -4.51 Total: -110.69 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.96 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -72.76 3.58 -69.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970935430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.050 kcal (2) G-P(sol) polarization free energy of solvation -72.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds