Wall clock time and date at job start Mon Mar 30 2020 00:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 119.99879 * 2 1 4 4 H 1.08001 * 120.00057 * 203.29748 * 3 2 1 5 5 C 1.38807 * 120.00324 * 23.29687 * 3 2 1 6 6 N 1.31619 * 120.00039 * 13.97732 * 5 3 2 7 7 Si 1.86804 * 120.00184 * 193.98066 * 5 3 2 8 8 H 1.48496 * 109.46965 * 59.99909 * 7 5 3 9 9 H 1.48500 * 109.46859 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46855 * 299.99668 * 7 5 3 11 11 C 1.46501 * 120.00126 * 179.97438 * 2 1 3 12 12 H 1.08995 * 110.88796 * 182.42773 * 11 2 1 13 13 C 1.55163 * 110.99910 * 58.55270 * 11 2 1 14 14 C 1.54330 * 102.94056 * 206.38423 * 13 11 2 15 15 N 1.47026 * 107.26704 * 22.19299 * 14 13 11 16 16 C 1.34774 * 125.64351 * 181.02511 * 15 14 13 17 17 O 1.21285 * 120.00153 * 180.02562 * 16 15 14 18 18 C 1.50699 * 120.00219 * 0.02562 * 16 15 14 19 19 C 1.53008 * 109.47187 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.46978 * 180.02562 * 19 18 16 21 21 C 1.52998 * 117.49403 * 243.75054 * 20 19 18 22 22 C 1.52994 * 117.49653 * 175.08890 * 20 19 18 23 23 C 1.47424 * 108.70508 * 1.28373 * 15 14 13 24 24 H 1.08992 * 109.47474 * 275.17234 * 1 2 3 25 25 H 1.09000 * 109.47127 * 35.16974 * 1 2 3 26 26 H 1.08998 * 109.47208 * 155.16889 * 1 2 3 27 27 H 0.96999 * 120.00416 * 179.97438 * 6 5 3 28 28 H 1.09000 * 110.71977 * 88.02533 * 13 11 2 29 29 H 1.08991 * 110.72035 * 324.74409 * 13 11 2 30 30 H 1.09000 * 109.88064 * 262.77805 * 14 13 11 31 31 H 1.08990 * 109.88109 * 141.60806 * 14 13 11 32 32 H 1.09008 * 109.47140 * 60.00512 * 18 16 15 33 33 H 1.08994 * 109.47652 * 300.00487 * 18 16 15 34 34 H 1.08994 * 109.47072 * 300.00201 * 19 18 16 35 35 H 1.08999 * 109.46720 * 60.00430 * 19 18 16 36 36 H 1.08994 * 115.54928 * 29.41533 * 20 19 18 37 37 H 1.09006 * 117.50376 * 359.97438 * 21 20 19 38 38 H 1.08996 * 117.49802 * 145.02152 * 21 20 19 39 39 H 1.08999 * 117.50171 * 214.97613 * 22 20 19 40 40 H 1.09005 * 117.50070 * 359.97438 * 22 20 19 41 41 H 1.09003 * 110.36173 * 94.48361 * 23 15 14 42 42 H 1.09002 * 110.36606 * 216.80012 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1636 1.2241 -0.3699 5 6 1.5405 2.3390 0.4754 6 7 0.4271 2.2558 1.1724 7 14 2.3009 4.0092 0.1259 8 1 2.3752 4.2217 -1.3419 9 1 1.4642 5.0719 0.7388 10 1 3.6679 4.0613 0.7036 11 6 2.1975 -1.2687 0.0006 12 1 3.2729 -1.0965 0.0436 13 6 1.8210 -2.1287 -1.2349 14 6 2.0905 -3.5685 -0.7488 15 7 2.0433 -3.5491 0.7205 16 6 2.2485 -4.6092 1.5270 17 8 2.1842 -4.4769 2.7309 18 6 2.5578 -5.9592 0.9329 19 6 2.7445 -6.9804 2.0569 20 6 3.0591 -8.3509 1.4537 21 6 2.0492 -9.4756 1.6905 22 6 3.3946 -9.4881 2.4207 23 6 1.7283 -2.1793 1.1654 24 1 -0.3634 0.0926 1.0234 25 1 -0.3633 0.8401 -0.5919 26 1 -0.3633 -0.9326 -0.4316 27 1 0.0017 3.0615 1.5050 28 1 2.4582 -1.8829 -2.0844 29 1 0.7694 -1.9982 -1.4895 30 1 3.0752 -3.8946 -1.0838 31 1 1.3239 -4.2398 -1.1355 32 1 3.4726 -5.8959 0.3435 33 1 1.7335 -6.2716 0.2919 34 1 3.5686 -6.6682 2.6983 35 1 1.8295 -7.0437 2.6459 36 1 3.5791 -8.3348 0.4960 37 1 1.1608 -9.2393 2.2764 38 1 1.9051 -10.1996 0.8887 39 1 4.1350 -10.2205 2.0989 40 1 3.3915 -9.2598 3.4866 41 1 0.6558 -2.0702 1.3269 42 1 2.2762 -1.9411 2.0771 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971226410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:17 Heat of formation + Delta-G solvation = 6.071366 kcal Electronic energy + Delta-G solvation = -20272.852011 eV Core-core repulsion = 17254.130268 eV Total energy + Delta-G solvation = -3018.721743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.79471 -37.95018 -37.18468 -34.78651 -32.39126 -31.47397 -29.73297 -28.01291 -26.08035 -25.20204 -23.01983 -22.57953 -22.26323 -20.56778 -19.31476 -18.82351 -17.06166 -16.79019 -16.12540 -15.67477 -15.27000 -14.89613 -14.49368 -13.92998 -13.61571 -13.28349 -13.25376 -12.66708 -12.43917 -12.26870 -12.18643 -11.92749 -11.77506 -11.52486 -11.42929 -11.29500 -10.90749 -10.79929 -10.52172 -10.50573 -10.46785 -10.29866 -10.06385 -9.90476 -9.84416 -9.52447 -8.60181 -8.28312 -6.81150 -5.77316 -3.25349 2.88879 3.25172 3.37312 3.42794 3.43719 3.59230 4.41110 4.46682 4.66359 4.72974 4.76509 5.01364 5.06669 5.14168 5.29559 5.33915 5.36317 5.41465 5.49371 5.53510 5.64957 5.69393 5.80518 5.85021 5.89040 5.91043 6.00610 6.01988 6.23122 6.31308 6.39619 6.56070 6.64340 6.76870 6.87852 7.30625 7.68524 7.76405 7.86197 8.33860 8.44257 9.17326 9.79840 10.28908 11.27018 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.048081 B = 0.003331 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.211520 B = 8403.735299 C = 8519.844770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.155 4.155 14 C 0.105 3.895 15 N -0.616 5.616 16 C 0.521 3.479 17 O -0.549 6.549 18 C -0.131 4.131 19 C -0.074 4.074 20 C -0.153 4.153 21 C -0.183 4.183 22 C -0.182 4.182 23 C 0.086 3.914 24 H 0.033 0.967 25 H 0.042 0.958 26 H 0.002 0.998 27 H 0.255 0.745 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 -19.143 -4.204 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.195 4.195 14 C -0.019 4.019 15 N -0.350 5.350 16 C 0.310 3.690 17 O -0.427 6.427 18 C -0.171 4.171 19 C -0.112 4.112 20 C -0.171 4.171 21 C -0.220 4.220 22 C -0.219 4.219 23 C -0.038 4.038 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.021 0.979 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.355 -18.940 -3.435 19.539 hybrid contribution 0.261 0.905 -0.219 0.967 sum 3.616 -18.035 -3.653 18.753 Atomic orbital electron populations 1.20810 0.82497 0.95595 0.99690 1.43849 1.01859 0.99882 1.84868 1.19164 0.98812 0.85235 1.36032 0.91268 1.25066 0.97967 0.98696 0.97637 1.70060 1.20118 1.27595 1.36943 0.86300 0.78462 0.83586 0.77955 1.20993 1.21603 1.20851 1.21505 0.96342 0.85744 0.90197 0.90415 1.23221 1.02820 0.92889 1.00533 1.22016 1.00607 0.99061 0.80207 1.48596 1.69298 1.09896 1.07210 1.20348 0.76901 0.85301 0.86486 1.90693 1.52295 1.85121 1.14600 1.21612 1.03569 0.92222 0.99727 1.20928 1.02908 0.90741 0.96603 1.22367 1.03650 0.90630 1.00428 1.23063 0.93679 1.01826 1.03384 1.22971 0.98960 1.01512 0.98466 1.23115 1.00924 0.79465 1.00286 0.94868 0.93951 0.97908 0.93533 0.90606 0.90531 0.91890 0.92135 0.89135 0.89132 0.90800 0.91069 0.87765 0.88736 0.89013 0.88957 0.88726 0.91509 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 7.60 59.85 0.45 4.25 16 2 N -0.58 -14.21 2.96 -170.91 -0.51 -14.72 16 3 C -0.26 -7.07 9.60 -15.06 -0.14 -7.21 16 4 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 5 C 0.01 0.15 5.08 -17.43 -0.09 0.06 16 6 N -0.90 -26.10 10.78 55.49 0.60 -25.50 16 7 Si 0.91 21.56 29.58 -169.99 -5.03 16.53 16 8 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.17 3.43 3.55 -65.66 -0.23 3.19 16 12 H 0.08 1.56 7.95 -51.93 -0.41 1.15 16 13 C -0.15 -2.40 6.49 -24.89 -0.16 -2.56 16 14 C 0.10 1.35 6.49 -3.06 -0.02 1.33 16 15 N -0.62 -9.99 3.32 -170.38 -0.57 -10.56 16 16 C 0.52 8.38 7.85 -10.99 -0.09 8.29 16 17 O -0.55 -11.05 16.24 5.55 0.09 -10.96 16 18 C -0.13 -1.45 4.85 -27.88 -0.14 -1.59 16 19 C -0.07 -0.81 4.78 -26.72 -0.13 -0.94 16 20 C -0.15 -1.33 5.73 -90.62 -0.52 -1.85 16 21 C -0.18 -1.47 10.18 -26.69 -0.27 -1.74 16 22 C -0.18 -1.47 10.25 -26.69 -0.27 -1.75 16 23 C 0.09 1.70 6.47 -2.42 -0.02 1.68 16 24 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 25 H 0.04 1.08 7.39 -51.93 -0.38 0.70 16 26 H 0.00 0.05 6.33 -51.93 -0.33 -0.28 16 27 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.24 6.36 -51.93 -0.33 0.91 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.07 0.86 7.83 -51.93 -0.41 0.46 16 36 H 0.10 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.09 0.78 8.03 -51.93 -0.42 0.36 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.41 7.06 -51.93 -0.37 1.04 16 42 H 0.07 1.56 8.03 -51.93 -0.42 1.14 16 LS Contribution 336.93 15.07 5.08 5.08 Total: -1.00 -30.96 336.93 -9.17 -40.13 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.21 Total: -1.19 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.62 Total: 1.18 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.47 Total: -50.77 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.96 -9.17 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971226410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.204 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds