Wall clock time and date at job start Mon Mar 30 2020 00:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36943 * 119.99884 * 2 1 4 4 H 1.07999 * 120.00410 * 202.00033 * 3 2 1 5 5 C 1.38816 * 119.99854 * 21.99826 * 3 2 1 6 6 N 1.31616 * 120.00055 * 12.68664 * 5 3 2 7 7 Si 1.86800 * 120.00056 * 192.68419 * 5 3 2 8 8 H 1.48498 * 109.47141 * 59.99676 * 7 5 3 9 9 H 1.48493 * 109.47338 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47173 * 300.00237 * 7 5 3 11 11 C 1.46493 * 120.00365 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.49886 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.52408 * 300.14613 * 11 2 1 14 14 C 1.53352 * 109.60552 * 181.33738 * 13 11 2 15 15 C 1.53190 * 109.15044 * 298.71265 * 14 13 11 16 16 N 1.46920 * 108.89373 * 54.58046 * 15 14 13 17 17 C 1.34776 * 120.63309 * 126.29638 * 16 15 14 18 18 O 1.21289 * 120.00153 * 179.97438 * 17 16 15 19 19 C 1.50704 * 120.00146 * 359.97438 * 17 16 15 20 20 C 1.53777 * 113.61580 * 277.50185 * 19 17 16 21 21 C 1.53775 * 87.07815 * 220.01709 * 20 19 17 22 22 C 1.53776 * 113.61376 * 180.02562 * 19 17 16 23 23 C 1.46928 * 118.74024 * 306.31783 * 16 15 14 24 24 H 1.09007 * 109.47437 * 274.33016 * 1 2 3 25 25 H 1.09005 * 109.47648 * 34.32545 * 1 2 3 26 26 H 1.08997 * 109.47005 * 154.33197 * 1 2 3 27 27 H 0.97003 * 119.99796 * 179.97438 * 6 5 3 28 28 H 1.08994 * 109.46383 * 301.35316 * 13 11 2 29 29 H 1.09000 * 109.45799 * 61.31759 * 13 11 2 30 30 H 1.09004 * 109.68367 * 178.74993 * 14 13 11 31 31 H 1.08997 * 109.47642 * 58.55557 * 14 13 11 32 32 H 1.08998 * 109.59226 * 294.71961 * 15 14 13 33 33 H 1.09006 * 109.58766 * 174.43325 * 15 14 13 34 34 H 1.09001 * 112.84510 * 48.80759 * 19 17 16 35 35 H 1.09003 * 113.61496 * 334.55994 * 20 19 17 36 36 H 1.08994 * 113.61771 * 105.47015 * 20 19 17 37 37 H 1.09001 * 113.61521 * 270.88157 * 21 20 19 38 38 H 1.09010 * 113.69425 * 139.99272 * 21 20 19 39 39 H 1.09011 * 113.61393 * 254.52885 * 22 19 17 40 40 H 1.08996 * 113.61761 * 25.43501 * 22 19 17 41 41 H 1.08999 * 109.58940 * 173.39355 * 23 16 15 42 42 H 1.09000 * 109.58743 * 293.82648 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1706 1.2201 -0.3504 5 6 1.5313 2.3444 0.4503 6 7 0.3914 2.2704 1.1042 7 14 2.3170 4.0082 0.1284 8 1 2.4495 4.2181 -1.3357 9 1 1.4655 5.0781 0.7073 10 1 3.6613 4.0510 0.7581 11 6 2.1975 -1.2686 0.0006 12 1 3.2692 -1.0699 0.0009 13 6 1.8259 -2.0732 1.2482 14 6 2.6168 -3.3869 1.2677 15 6 2.2510 -4.2122 0.0301 16 7 2.4689 -3.3926 -1.1697 17 6 3.2424 -3.8425 -2.1775 18 8 3.4141 -3.1566 -3.1629 19 6 3.8940 -5.1979 -2.0800 20 6 5.2040 -5.1952 -1.2746 21 6 5.7619 -6.1661 -2.3286 22 6 4.7429 -5.5631 -3.3091 23 6 1.8279 -2.0730 -1.2498 24 1 -0.3634 0.0776 1.0248 25 1 -0.3634 0.8487 -0.5795 26 1 -0.3633 -0.9262 -0.4451 27 1 -0.0404 3.0798 1.4191 28 1 2.0652 -1.4928 2.1392 29 1 0.7584 -2.2929 1.2340 30 1 2.3697 -3.9509 2.1672 31 1 3.6846 -3.1684 1.2568 32 1 1.2035 -4.5085 0.0849 33 1 2.8802 -5.1011 -0.0155 34 1 3.1978 -5.9817 -1.7813 35 1 5.7069 -4.2282 -1.2622 36 1 5.1076 -5.6361 -0.2825 37 1 5.5776 -7.2151 -2.0969 38 1 6.7989 -5.9687 -2.6006 39 1 4.2740 -6.3013 -3.9600 40 1 5.1197 -4.6967 -3.8526 41 1 2.1797 -1.5491 -2.1385 42 1 0.7458 -2.1947 -1.2992 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027263290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:56 Heat of formation + Delta-G solvation = -13.894573 kcal Electronic energy + Delta-G solvation = -21293.265306 eV Core-core repulsion = 18273.677775 eV Total energy + Delta-G solvation = -3019.587531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57440 -39.44818 -38.06092 -36.77345 -33.93241 -32.85479 -30.69918 -28.13944 -27.94986 -26.51511 -25.84011 -25.08379 -23.04829 -21.56509 -20.50065 -19.57571 -18.82646 -18.38212 -17.20342 -16.85374 -16.43408 -15.96435 -15.78243 -15.27288 -15.11477 -15.02488 -14.48474 -14.05509 -13.92446 -13.73289 -13.53522 -13.34152 -12.94558 -12.86916 -12.79784 -12.51797 -12.32017 -12.16506 -12.08055 -11.92047 -11.80386 -11.65427 -11.41836 -11.36048 -11.24513 -10.72146 -10.59208 -9.69356 -8.78502 -7.86107 -5.34021 1.42419 1.45389 1.51987 1.62453 2.02431 2.48857 3.26642 3.51191 3.58944 3.66211 3.74991 3.95599 3.97541 4.03618 4.12109 4.20385 4.29039 4.35868 4.61895 4.69173 4.73835 4.76824 4.82737 4.86299 4.89856 4.91598 5.02868 5.08130 5.12443 5.15000 5.22689 5.26421 5.43068 5.48370 5.50428 5.58914 5.62199 5.69420 6.29333 6.50867 7.11689 7.21513 7.83427 8.25766 9.16356 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028411 B = 0.004835 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.288863 B = 5789.729440 C = 6176.623242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.611 5.611 3 C -0.269 4.269 4 H 0.060 0.940 5 C -0.046 4.046 6 N -0.934 5.934 7 Si 0.967 3.033 8 H -0.283 1.283 9 H -0.288 1.288 10 H -0.276 1.276 11 C 0.169 3.831 12 H 0.041 0.959 13 C -0.123 4.123 14 C -0.122 4.122 15 C 0.106 3.894 16 N -0.605 5.605 17 C 0.510 3.490 18 O -0.599 6.599 19 C -0.132 4.132 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.129 4.129 23 C 0.111 3.889 24 H 0.008 0.992 25 H 0.013 0.987 26 H 0.029 0.971 27 H 0.250 0.750 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.146 0.854 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.376 -21.412 -0.773 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.334 5.334 3 C -0.399 4.399 4 H 0.078 0.922 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.794 3.206 8 H -0.209 1.209 9 H -0.214 1.214 10 H -0.201 1.201 11 C 0.061 3.939 12 H 0.060 0.940 13 C -0.162 4.162 14 C -0.160 4.160 15 C -0.015 4.015 16 N -0.337 5.337 17 C 0.300 3.700 18 O -0.480 6.480 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.163 4.163 22 C -0.167 4.167 23 C -0.014 4.014 24 H 0.027 0.973 25 H 0.032 0.968 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.345 -20.910 -1.208 21.885 hybrid contribution -0.065 1.935 -0.223 1.949 sum 6.280 -18.975 -1.431 20.038 Atomic orbital electron populations 1.20483 0.82506 0.95675 0.97655 1.44095 1.02183 1.01024 1.86096 1.19438 0.97730 0.86886 1.35884 0.92219 1.25687 0.98476 1.01487 0.98514 1.70209 1.19620 1.27555 1.40637 0.85360 0.77809 0.79681 0.77705 1.20945 1.21409 1.20140 1.20685 0.94608 0.85312 0.93270 0.94041 1.21988 1.00248 0.96453 0.97541 1.21946 1.00039 0.95128 0.98934 1.22066 1.03247 0.93890 0.82336 1.48311 1.48265 1.17679 1.19408 1.21494 0.77474 0.89560 0.81449 1.90653 1.63273 1.60557 1.33513 1.22971 0.97798 0.92989 1.01517 1.22845 0.93140 1.00185 0.99688 1.22810 0.98751 0.99909 0.94797 1.22816 0.97248 1.00668 0.95925 1.21888 0.96887 0.83482 0.99178 0.97328 0.96822 0.95274 0.94117 0.94004 0.92361 0.87664 0.91958 0.89932 0.86210 0.83688 0.92070 0.87786 0.87116 0.90915 0.89928 0.92006 0.93075 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.19 8.03 127.77 1.03 10.22 16 2 N -0.61 -31.87 2.82 -702.35 -1.98 -33.85 16 3 C -0.27 -15.58 9.60 84.03 0.81 -14.77 16 4 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 5 C -0.05 -2.67 5.10 84.86 0.43 -2.24 16 6 N -0.93 -56.09 10.64 21.65 0.23 -55.86 16 7 Si 0.97 46.72 29.57 68.60 2.03 48.75 16 8 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 9 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 C 0.17 7.16 2.74 45.07 0.12 7.28 16 12 H 0.04 1.90 7.86 -2.39 -0.02 1.88 16 13 C -0.12 -4.21 5.15 30.72 0.16 -4.05 16 14 C -0.12 -2.75 6.11 30.78 0.19 -2.56 16 15 C 0.11 2.08 6.30 86.36 0.54 2.62 16 16 N -0.60 -17.95 2.97 -818.89 -2.43 -20.38 16 17 C 0.51 15.73 7.22 87.66 0.63 16.37 16 18 O -0.60 -24.84 15.31 -3.06 -0.05 -24.89 16 19 C -0.13 -2.52 2.72 -11.02 -0.03 -2.55 16 20 C -0.12 -1.89 7.22 31.12 0.22 -1.66 16 21 C -0.13 -1.61 8.08 31.10 0.25 -1.36 16 22 C -0.13 -2.47 7.40 31.10 0.23 -2.24 16 23 C 0.11 4.27 5.79 86.36 0.50 4.77 16 24 H 0.01 0.46 7.41 -2.38 -0.02 0.44 16 25 H 0.01 0.73 7.21 -2.38 -0.02 0.72 16 26 H 0.03 1.26 6.36 -2.39 -0.02 1.24 16 27 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.97 7.72 -2.39 -0.02 1.95 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.12 1.45 5.46 -2.38 -0.01 1.44 16 34 H 0.15 1.77 7.47 -2.39 -0.02 1.75 16 35 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 36 H 0.10 1.04 7.97 -2.39 -0.02 1.02 16 37 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.06 1.60 7.43 -2.39 -0.02 1.58 16 41 H 0.05 2.34 7.00 -2.39 -0.02 2.33 16 42 H 0.06 2.42 6.50 -2.39 -0.02 2.40 16 Total: -1.00 -73.86 323.71 3.87 -69.98 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 0.98 Total: 6.42 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 5.09 Total: 9.83 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -4.18 Total: -110.09 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.05 Total: -24.89 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -73.86 3.87 -69.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027263290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.088 kcal (2) G-P(sol) polarization free energy of solvation -73.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds