Wall clock time and date at job start Mon Mar 30 2020 00:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 120.00019 * 2 1 4 4 H 1.07998 * 119.99820 * 144.44558 * 3 2 1 5 5 C 1.38812 * 119.99815 * 324.44594 * 3 2 1 6 6 N 1.31613 * 120.00065 * 157.65845 * 5 3 2 7 7 Si 1.86804 * 120.00007 * 337.65587 * 5 3 2 8 8 H 1.48498 * 109.46901 * 95.57954 * 7 5 3 9 9 H 1.48498 * 109.47185 * 215.58190 * 7 5 3 10 10 H 1.48505 * 109.46938 * 335.57904 * 7 5 3 11 11 C 1.46499 * 120.00343 * 179.97438 * 2 1 3 12 12 H 1.08997 * 109.50309 * 179.97438 * 11 2 1 13 13 C 1.53043 * 109.49784 * 300.00167 * 11 2 1 14 14 C 1.53041 * 109.54185 * 181.34859 * 13 11 2 15 15 C 1.53190 * 109.30899 * 298.63273 * 14 13 11 16 16 N 1.46931 * 108.77521 * 54.63601 * 15 14 13 17 17 C 1.34776 * 120.62721 * 126.36969 * 16 15 14 18 18 O 1.21281 * 119.99344 * 179.97438 * 17 16 15 19 19 C 1.50696 * 120.00580 * 359.97438 * 17 16 15 20 20 C 1.52996 * 109.47332 * 180.02562 * 19 17 16 21 21 C 1.53000 * 117.50035 * 116.25195 * 20 19 17 22 22 C 1.52997 * 117.49662 * 184.91225 * 20 19 17 23 23 C 1.46930 * 118.73675 * 306.63747 * 16 15 14 24 24 H 1.08999 * 109.46957 * 267.71896 * 1 2 3 25 25 H 1.09003 * 109.47249 * 27.71616 * 1 2 3 26 26 H 1.09000 * 109.46908 * 147.71938 * 1 2 3 27 27 H 0.96999 * 120.00543 * 179.97438 * 6 5 3 28 28 H 1.09006 * 109.46376 * 61.32304 * 13 11 2 29 29 H 1.09005 * 109.45973 * 301.37025 * 13 11 2 30 30 H 1.08998 * 109.49895 * 178.68158 * 14 13 11 31 31 H 1.09001 * 109.49583 * 58.58400 * 14 13 11 32 32 H 1.08999 * 109.59118 * 294.84714 * 15 14 13 33 33 H 1.09001 * 109.70250 * 174.48988 * 15 14 13 34 34 H 1.08997 * 109.47192 * 59.99980 * 19 17 16 35 35 H 1.09003 * 109.46565 * 300.00046 * 19 17 16 36 36 H 1.09004 * 115.54916 * 330.58077 * 20 19 17 37 37 H 1.09001 * 117.49373 * 215.00355 * 21 20 19 38 38 H 1.08997 * 117.49602 * 0.02562 * 21 20 19 39 39 H 1.08997 * 117.50355 * 359.97438 * 22 20 19 40 40 H 1.09007 * 117.49533 * 144.97006 * 22 20 19 41 41 H 1.08998 * 109.58145 * 173.14637 * 23 16 15 42 42 H 1.08997 * 109.58472 * 293.57361 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0786 1.2731 0.5439 5 6 1.6497 2.2760 -0.6990 6 7 2.0223 3.4950 -0.3714 7 14 0.4479 2.0128 -2.1047 8 1 -0.9416 2.1627 -1.6027 9 1 0.7014 3.0183 -3.1676 10 1 0.6286 0.6479 -2.6614 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8282 -2.0712 1.2503 14 6 2.6182 -3.3818 1.2690 15 6 2.2510 -4.2122 0.0352 16 7 2.4667 -3.3947 -1.1665 17 6 3.2384 -3.8465 -2.1749 18 8 3.4083 -3.1622 -3.1617 19 6 3.8900 -5.2017 -2.0763 20 6 4.7046 -5.4693 -3.3435 21 6 6.2193 -5.6210 -3.1907 22 6 5.3531 -6.8475 -3.4884 23 6 1.8300 -2.0728 -1.2452 24 1 -0.3633 -0.0409 1.0268 25 1 -0.3634 0.9098 -0.4780 26 1 -0.3633 -0.8688 -0.5488 27 1 1.6733 4.2568 -0.8601 28 1 0.7606 -2.2908 1.2386 29 1 2.0692 -1.4892 2.1399 30 1 2.3722 -3.9421 2.1710 31 1 3.6860 -3.1632 1.2558 32 1 1.2036 -4.5084 0.0924 33 1 2.8801 -5.1012 -0.0100 34 1 3.1217 -5.9674 -1.9694 35 1 4.5498 -5.2253 -1.2089 36 1 4.3357 -4.9888 -4.2497 37 1 6.8470 -5.2403 -3.9964 38 1 6.6355 -5.5306 -2.1874 39 1 5.1998 -7.5633 -2.6809 40 1 5.4105 -7.2738 -4.4900 41 1 2.1834 -1.5495 -2.1336 42 1 0.7476 -2.1910 -1.2944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027269088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:01 Heat of formation + Delta-G solvation = 13.884248 kcal Electronic energy + Delta-G solvation = -21083.517498 eV Core-core repulsion = 18065.134547 eV Total energy + Delta-G solvation = -3018.382951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09206 -37.95868 -36.84639 -35.25964 -32.41071 -31.54939 -30.31451 -28.73717 -26.17869 -25.01862 -23.73911 -22.52426 -21.69954 -21.03219 -19.48526 -18.66054 -17.07852 -16.82448 -16.12674 -15.44351 -15.37961 -14.89961 -14.28235 -14.19980 -14.04381 -13.64920 -13.21946 -13.03513 -12.72529 -12.33757 -12.28932 -12.21084 -12.15481 -11.67588 -11.66469 -11.25292 -11.04604 -10.63717 -10.52822 -10.48016 -10.39994 -10.14284 -10.05020 -9.93143 -9.59266 -9.51866 -8.51012 -8.40082 -6.85956 -5.99155 -3.39658 2.81901 3.13976 3.32512 3.50450 3.55811 3.68112 4.47034 4.53417 4.57803 4.76764 4.79499 4.95968 5.05369 5.14603 5.22679 5.29324 5.32685 5.38949 5.46521 5.49379 5.52203 5.68019 5.75852 5.76483 5.86025 5.95655 6.04638 6.10386 6.20141 6.22353 6.32429 6.40233 6.48368 6.66609 6.70533 6.86441 6.89534 7.63340 8.03127 8.35092 8.40571 8.96677 9.70457 10.08578 11.16430 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024013 B = 0.005194 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.758155 B = 5389.982012 C = 5965.237324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.602 5.602 3 C -0.270 4.270 4 H 0.081 0.919 5 C 0.035 3.965 6 N -0.900 5.900 7 Si 0.882 3.118 8 H -0.287 1.287 9 H -0.302 1.302 10 H -0.269 1.269 11 C 0.166 3.834 12 H 0.074 0.926 13 C -0.131 4.131 14 C -0.132 4.132 15 C 0.108 3.892 16 N -0.609 5.609 17 C 0.512 3.488 18 O -0.539 6.539 19 C -0.108 4.108 20 C -0.139 4.139 21 C -0.178 4.178 22 C -0.182 4.182 23 C 0.093 3.907 24 H 0.017 0.983 25 H 0.045 0.955 26 H 0.029 0.971 27 H 0.264 0.736 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.037 -21.376 0.342 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.325 5.325 3 C -0.398 4.398 4 H 0.098 0.902 5 C -0.165 4.165 6 N -0.541 5.541 7 Si 0.713 3.287 8 H -0.215 1.215 9 H -0.230 1.230 10 H -0.194 1.194 11 C 0.058 3.942 12 H 0.092 0.908 13 C -0.171 4.171 14 C -0.171 4.171 15 C -0.016 4.016 16 N -0.343 5.343 17 C 0.300 3.700 18 O -0.416 6.416 19 C -0.148 4.148 20 C -0.158 4.158 21 C -0.215 4.215 22 C -0.219 4.219 23 C -0.031 4.031 24 H 0.035 0.965 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.112 -20.787 -0.220 20.896 hybrid contribution -0.791 0.011 -0.714 1.066 sum 1.320 -20.776 -0.934 20.839 Atomic orbital electron populations 1.21326 0.84917 0.98970 0.98250 1.44081 1.00488 1.01542 1.86371 1.18807 1.08256 0.86233 1.26527 0.90175 1.25429 0.98250 0.95192 0.97655 1.69856 1.46193 0.97681 1.40366 0.86877 0.80237 0.77922 0.83657 1.21539 1.22997 1.19358 1.20684 0.97090 0.85657 0.90754 0.90823 1.22039 0.99432 0.95065 1.00533 1.21910 1.01195 0.97170 0.96807 1.21742 1.01297 0.93614 0.84913 1.48255 1.49437 1.18840 1.17790 1.20539 0.78568 0.88271 0.82668 1.90695 1.61235 1.58587 1.31075 1.21239 0.99879 0.95241 0.98418 1.22078 0.94420 0.99626 0.99646 1.23033 0.93513 1.01985 1.02936 1.22997 1.05087 0.91080 1.02767 1.22380 0.96680 0.81659 1.02353 0.96456 0.93644 0.95225 0.92656 0.92469 0.91371 0.91124 0.91551 0.91558 0.90233 0.88805 0.88934 0.86440 0.88776 0.88841 0.88890 0.88821 0.89021 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.39 8.56 59.84 0.51 2.91 16 2 N -0.60 -14.31 2.41 -173.60 -0.42 -14.72 16 3 C -0.27 -7.63 9.85 -15.06 -0.15 -7.78 16 4 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 5 C 0.04 1.04 5.31 -17.43 -0.09 0.94 16 6 N -0.90 -27.82 13.97 55.49 0.78 -27.05 16 7 Si 0.88 22.89 24.94 -169.99 -4.24 18.65 16 8 H -0.29 -7.16 6.67 56.52 0.38 -6.78 16 9 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 10 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 11 C 0.17 3.28 2.73 -68.03 -0.19 3.09 16 12 H 0.07 1.58 7.89 -51.93 -0.41 1.17 16 13 C -0.13 -2.04 5.15 -26.69 -0.14 -2.18 16 14 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16 15 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 16 N -0.61 -9.17 2.98 -173.03 -0.52 -9.68 16 17 C 0.51 7.98 7.70 -10.99 -0.08 7.89 16 18 O -0.54 -10.86 14.98 5.56 0.08 -10.77 16 19 C -0.11 -1.15 4.33 -27.89 -0.12 -1.27 16 20 C -0.14 -1.55 5.41 -90.62 -0.49 -2.04 16 21 C -0.18 -1.74 10.18 -26.69 -0.27 -2.01 16 22 C -0.18 -1.55 10.25 -26.69 -0.27 -1.82 16 23 C 0.09 1.74 5.77 -3.93 -0.02 1.72 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 1.08 3.11 -51.93 -0.16 0.92 16 26 H 0.03 0.56 6.34 -51.93 -0.33 0.24 16 27 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 28 H 0.06 0.86 7.72 -51.93 -0.40 0.46 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 34 H 0.09 0.79 7.94 -51.93 -0.41 0.38 16 35 H 0.09 0.83 7.43 -51.93 -0.39 0.45 16 36 H 0.12 1.58 7.31 -51.93 -0.38 1.20 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 2.06 7.01 -51.93 -0.36 1.69 16 42 H 0.06 1.07 6.47 -51.93 -0.34 0.73 16 LS Contribution 324.49 15.07 4.89 4.89 Total: -1.00 -33.00 324.49 -7.79 -40.80 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.87 Total: -1.00 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.50 Total: -1.11 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.16 Total: -51.46 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.24 Total: 18.65 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.00 -7.79 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027269088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.679 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds