Wall clock time and date at job start Mon Mar 30 2020 00:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34784 * 119.99659 * 2 1 4 4 O 1.21278 * 119.99816 * 185.15499 * 3 2 1 5 5 C 1.50698 * 120.00099 * 5.15232 * 3 2 1 6 6 C 1.54265 * 110.03220 * 290.01960 * 5 3 2 7 7 C 1.54963 * 104.15930 * 217.13546 * 6 5 3 8 8 C 1.54889 * 102.77819 * 37.88836 * 7 6 5 9 9 C 1.53877 * 110.03127 * 172.80304 * 5 3 2 10 10 C 1.46495 * 120.00146 * 180.02562 * 2 1 3 11 11 H 1.09004 * 110.88378 * 189.51862 * 10 2 1 12 12 C 1.55158 * 111.00771 * 65.63805 * 10 2 1 13 13 C 1.54321 * 102.94150 * 277.39038 * 12 10 2 14 14 N 1.47029 * 107.27295 * 337.80554 * 13 12 10 15 15 C 1.36936 * 125.65164 * 178.99272 * 14 13 12 16 16 H 1.07996 * 119.99965 * 185.30368 * 15 14 13 17 17 C 1.38810 * 119.99707 * 5.31443 * 15 14 13 18 18 N 1.31623 * 120.00193 * 5.52798 * 17 15 14 19 19 Si 1.86804 * 119.99896 * 185.52900 * 17 15 14 20 20 H 1.48509 * 109.46802 * 94.99572 * 19 17 15 21 21 H 1.48494 * 109.47217 * 214.99537 * 19 17 15 22 22 H 1.48498 * 109.47042 * 334.99767 * 19 17 15 23 23 C 1.47475 * 108.71829 * 358.97540 * 14 13 12 24 24 H 1.08998 * 109.46436 * 215.12770 * 1 2 3 25 25 H 1.08996 * 109.47272 * 335.13167 * 1 2 3 26 26 H 1.08993 * 109.46963 * 95.13220 * 1 2 3 27 27 H 1.09000 * 110.01510 * 51.40833 * 5 3 2 28 28 H 1.08996 * 110.49002 * 335.78319 * 6 5 3 29 29 H 1.08998 * 110.48934 * 98.42759 * 6 5 3 30 30 H 1.09003 * 110.72191 * 279.57433 * 7 6 5 31 31 H 1.09002 * 110.76334 * 156.21989 * 7 6 5 32 32 H 1.08994 * 110.48905 * 203.40043 * 8 7 6 33 33 H 1.09005 * 110.48661 * 80.76078 * 8 7 6 34 34 H 1.08993 * 110.02984 * 238.57206 * 9 5 3 35 35 H 1.08997 * 110.02863 * 359.97438 * 9 5 3 36 36 H 1.08994 * 110.71830 * 35.75100 * 12 10 2 37 37 H 1.08998 * 110.72189 * 159.02955 * 12 10 2 38 38 H 1.09004 * 109.88154 * 97.22191 * 13 12 10 39 39 H 1.08996 * 109.88640 * 218.23631 * 13 12 10 40 40 H 0.96998 * 120.00092 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.34804 * 265.24952 * 23 14 13 42 42 H 1.09005 * 110.39952 * 142.91741 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3480 1.1695 -0.0944 5 6 1.3899 2.4697 0.1172 6 6 0.5926 2.7390 -1.1757 7 6 0.7011 4.2718 -1.3757 8 6 2.1532 4.5735 -0.9292 9 6 2.3816 3.6358 0.2742 10 6 2.1975 -1.2687 -0.0006 11 1 3.2617 -1.1030 0.1679 12 6 1.9582 -2.0485 -1.3204 13 6 0.6132 -2.7598 -1.0625 14 7 0.4371 -2.8457 0.3946 15 6 -0.6417 -3.3918 1.0374 16 1 -0.7172 -3.3307 2.1129 17 6 -1.6380 -4.0242 0.3064 18 7 -1.4947 -4.1953 -0.9908 19 14 -3.1822 -4.6324 1.1637 20 1 -4.2471 -3.6031 1.0542 21 1 -3.6418 -5.8903 0.5221 22 1 -2.8853 -4.8872 2.5962 23 6 1.6148 -2.2468 1.0498 24 1 -0.3632 -0.8405 0.5913 25 1 -0.3633 0.9323 0.4321 26 1 -0.3633 -0.0919 -1.0235 27 1 0.7146 2.4361 0.9722 28 1 1.0414 2.2118 -2.0175 29 1 -0.4489 2.4427 -1.0503 30 1 -0.0146 4.7951 -0.7417 31 1 0.5563 4.5360 -2.4233 32 1 2.2500 5.6156 -0.6246 33 1 2.8547 4.3429 -1.7311 34 1 2.1871 4.1685 1.2049 35 1 3.4046 3.2595 0.2660 36 1 1.8765 -1.3631 -2.1639 37 1 2.7529 -2.7755 -1.4883 38 1 -0.2012 -2.1829 -1.5010 39 1 0.6337 -3.7599 -1.4953 40 1 -2.1910 -4.6368 -1.5016 41 1 2.3446 -3.0180 1.2961 42 1 1.3159 -1.7056 1.9475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032866479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:18 Heat of formation + Delta-G solvation = -14.355249 kcal Electronic energy + Delta-G solvation = -21562.226726 eV Core-core repulsion = 18542.619218 eV Total energy + Delta-G solvation = -3019.607508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.19762 -37.97373 -36.60570 -34.24503 -32.20494 -29.70664 -28.93164 -28.67186 -27.55313 -26.01470 -24.35436 -22.07031 -20.78341 -20.07331 -19.65140 -18.28412 -17.33702 -16.93568 -15.93296 -15.51558 -14.89788 -14.67029 -14.43023 -13.80133 -13.65024 -13.40269 -12.97387 -12.71200 -12.08901 -11.95468 -11.73840 -11.63480 -11.54979 -11.27362 -11.13341 -10.98510 -10.95874 -10.90938 -10.81607 -10.73051 -10.50360 -10.24492 -10.14791 -9.93092 -9.64669 -9.27892 -8.71994 -8.13826 -6.83162 -5.76234 -3.12251 2.93954 3.35362 3.41416 3.41873 3.43567 4.44699 4.48146 4.59556 4.72686 5.08958 5.34181 5.38815 5.41779 5.42209 5.43554 5.54447 5.59514 5.63318 5.71413 5.74824 5.83047 5.87742 5.90588 6.04190 6.13460 6.17707 6.23795 6.26654 6.33152 6.40628 6.51600 6.54196 6.63079 6.77525 7.11198 7.47557 7.61759 7.78627 7.89020 8.19925 8.53875 9.15555 9.75810 10.41939 11.33693 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027998 B = 0.005190 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.840610 B = 5393.768825 C = 5825.442504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.588 5.588 3 C 0.515 3.485 4 O -0.556 6.556 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.124 4.124 8 C -0.123 4.123 9 C -0.118 4.118 10 C 0.123 3.877 11 H 0.096 0.904 12 C -0.154 4.154 13 C 0.174 3.826 14 N -0.601 5.601 15 C -0.233 4.233 16 H 0.078 0.922 17 C -0.004 4.004 18 N -0.917 5.917 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.125 3.875 24 H 0.111 0.889 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.055 0.945 40 H 0.252 0.748 41 H 0.031 0.969 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 14.133 0.062 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.318 5.318 3 C 0.303 3.697 4 O -0.435 6.435 5 C -0.133 4.133 6 C -0.150 4.150 7 C -0.161 4.161 8 C -0.160 4.160 9 C -0.156 4.156 10 C 0.019 3.981 11 H 0.114 0.886 12 C -0.194 4.194 13 C 0.050 3.950 14 N -0.328 5.328 15 C -0.361 4.361 16 H 0.095 0.905 17 C -0.201 4.201 18 N -0.564 5.564 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.002 4.002 24 H 0.129 0.871 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.221 13.970 -0.038 14.594 hybrid contribution -1.026 -0.522 0.344 1.201 sum 3.195 13.448 0.307 13.826 Atomic orbital electron populations 1.22184 0.78588 1.03789 1.02978 1.47687 1.07619 1.05121 1.71405 1.20560 0.87755 0.85430 0.75948 1.90600 1.14474 1.87153 1.51255 1.21904 0.98043 0.93094 1.00230 1.22387 0.99975 0.96458 0.96221 1.22522 0.96965 0.95539 1.01102 1.22345 0.96690 0.98916 0.98063 1.22151 1.00901 0.94469 0.98083 1.22229 0.95975 0.82735 0.97142 0.88578 1.23230 1.00902 0.98865 0.96366 1.21208 0.90611 0.98629 0.84576 1.44600 1.17516 1.69232 1.01495 1.19034 0.96218 1.29518 0.91288 0.90455 1.24797 0.99101 1.00326 0.95855 1.69973 1.33703 1.47401 1.05360 0.86141 0.83280 0.78096 0.78487 1.21630 1.21769 1.20640 1.21881 0.90558 0.93372 0.94342 0.87070 0.92522 0.92895 0.88770 0.91232 0.90653 0.91381 0.91505 0.91805 0.91622 0.91798 0.89354 0.92124 0.91487 0.94637 0.92700 0.93734 0.95153 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 7.83 59.85 0.47 1.60 16 2 N -0.59 -10.20 2.91 -171.48 -0.50 -10.70 16 3 C 0.51 8.61 6.85 -10.98 -0.08 8.54 16 4 O -0.56 -10.82 14.67 5.56 0.08 -10.74 16 5 C -0.11 -1.44 2.39 -90.65 -0.22 -1.66 16 6 C -0.11 -1.30 5.38 -25.03 -0.13 -1.44 16 7 C -0.12 -1.19 6.91 -24.70 -0.17 -1.36 16 8 C -0.12 -1.25 6.83 -25.07 -0.17 -1.42 16 9 C -0.12 -1.41 6.39 -25.61 -0.16 -1.57 16 10 C 0.12 2.31 3.61 -65.78 -0.24 2.07 16 11 H 0.10 1.79 7.11 -51.93 -0.37 1.43 16 12 C -0.15 -2.97 6.55 -24.90 -0.16 -3.14 16 13 C 0.17 4.06 4.48 -3.06 -0.01 4.04 16 14 N -0.60 -14.40 1.92 -170.03 -0.33 -14.73 16 15 C -0.23 -6.10 9.72 -15.06 -0.15 -6.25 16 16 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 17 C 0.00 -0.11 5.46 -17.43 -0.10 -0.20 16 18 N -0.92 -25.86 10.42 55.49 0.58 -25.29 16 19 Si 0.91 21.27 29.56 -169.99 -5.02 16.24 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.13 2.55 6.16 -2.50 -0.02 2.54 16 24 H 0.11 2.24 5.14 -51.93 -0.27 1.98 16 25 H 0.06 0.78 5.36 -51.93 -0.28 0.50 16 26 H 0.05 0.92 7.47 -51.93 -0.39 0.53 16 27 H 0.09 1.12 7.18 -51.93 -0.37 0.75 16 28 H 0.07 0.90 7.85 -51.93 -0.41 0.50 16 29 H 0.07 0.82 7.25 -51.93 -0.38 0.44 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.25 6.42 -51.93 -0.33 0.92 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.04 0.89 6.76 -51.93 -0.35 0.54 16 39 H 0.05 1.45 7.08 -51.93 -0.37 1.09 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.87 8.13 -51.93 -0.42 0.45 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -29.22 316.38 -8.42 -37.63 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.86 Total: 1.06 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.13 Total: 1.76 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.25 Total: -50.72 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.22 -8.42 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032866479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.280 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds