Wall clock time and date at job start Mon Mar 30 2020 00:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34784 * 119.99659 * 2 1 4 4 O 1.21278 * 119.99816 * 185.15499 * 3 2 1 5 5 C 1.50698 * 120.00099 * 5.15232 * 3 2 1 6 6 C 1.54265 * 110.03220 * 290.01960 * 5 3 2 7 7 C 1.54963 * 104.15930 * 217.13546 * 6 5 3 8 8 C 1.54889 * 102.77819 * 37.88836 * 7 6 5 9 9 C 1.53877 * 110.03127 * 172.80304 * 5 3 2 10 10 C 1.46495 * 120.00146 * 180.02562 * 2 1 3 11 11 H 1.09004 * 110.88378 * 189.51862 * 10 2 1 12 12 C 1.55158 * 111.00771 * 65.63805 * 10 2 1 13 13 C 1.54321 * 102.94150 * 277.39038 * 12 10 2 14 14 N 1.47029 * 107.27295 * 337.80554 * 13 12 10 15 15 C 1.36936 * 125.65164 * 178.99272 * 14 13 12 16 16 H 1.07996 * 119.99965 * 185.30368 * 15 14 13 17 17 C 1.38810 * 119.99707 * 5.31443 * 15 14 13 18 18 N 1.31623 * 120.00193 * 5.52798 * 17 15 14 19 19 Si 1.86804 * 119.99896 * 185.52900 * 17 15 14 20 20 H 1.48509 * 109.46802 * 94.99572 * 19 17 15 21 21 H 1.48494 * 109.47217 * 214.99537 * 19 17 15 22 22 H 1.48498 * 109.47042 * 334.99767 * 19 17 15 23 23 C 1.47475 * 108.71829 * 358.97540 * 14 13 12 24 24 H 1.08998 * 109.46436 * 215.12770 * 1 2 3 25 25 H 1.08996 * 109.47272 * 335.13167 * 1 2 3 26 26 H 1.08993 * 109.46963 * 95.13220 * 1 2 3 27 27 H 1.09000 * 110.01510 * 51.40833 * 5 3 2 28 28 H 1.08996 * 110.49002 * 335.78319 * 6 5 3 29 29 H 1.08998 * 110.48934 * 98.42759 * 6 5 3 30 30 H 1.09003 * 110.72191 * 279.57433 * 7 6 5 31 31 H 1.09002 * 110.76334 * 156.21989 * 7 6 5 32 32 H 1.08994 * 110.48905 * 203.40043 * 8 7 6 33 33 H 1.09005 * 110.48661 * 80.76078 * 8 7 6 34 34 H 1.08993 * 110.02984 * 238.57206 * 9 5 3 35 35 H 1.08997 * 110.02863 * 359.97438 * 9 5 3 36 36 H 1.08994 * 110.71830 * 35.75100 * 12 10 2 37 37 H 1.08998 * 110.72189 * 159.02955 * 12 10 2 38 38 H 1.09004 * 109.88154 * 97.22191 * 13 12 10 39 39 H 1.08996 * 109.88640 * 218.23631 * 13 12 10 40 40 H 0.96998 * 120.00092 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.34804 * 265.24952 * 23 14 13 42 42 H 1.09005 * 110.39952 * 142.91741 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3480 1.1695 -0.0944 5 6 1.3899 2.4697 0.1172 6 6 0.5926 2.7390 -1.1757 7 6 0.7011 4.2718 -1.3757 8 6 2.1532 4.5735 -0.9292 9 6 2.3816 3.6358 0.2742 10 6 2.1975 -1.2687 -0.0006 11 1 3.2617 -1.1030 0.1679 12 6 1.9582 -2.0485 -1.3204 13 6 0.6132 -2.7598 -1.0625 14 7 0.4371 -2.8457 0.3946 15 6 -0.6417 -3.3918 1.0374 16 1 -0.7172 -3.3307 2.1129 17 6 -1.6380 -4.0242 0.3064 18 7 -1.4947 -4.1953 -0.9908 19 14 -3.1822 -4.6324 1.1637 20 1 -4.2471 -3.6031 1.0542 21 1 -3.6418 -5.8903 0.5221 22 1 -2.8853 -4.8872 2.5962 23 6 1.6148 -2.2468 1.0498 24 1 -0.3632 -0.8405 0.5913 25 1 -0.3633 0.9323 0.4321 26 1 -0.3633 -0.0919 -1.0235 27 1 0.7146 2.4361 0.9722 28 1 1.0414 2.2118 -2.0175 29 1 -0.4489 2.4427 -1.0503 30 1 -0.0146 4.7951 -0.7417 31 1 0.5563 4.5360 -2.4233 32 1 2.2500 5.6156 -0.6246 33 1 2.8547 4.3429 -1.7311 34 1 2.1871 4.1685 1.2049 35 1 3.4046 3.2595 0.2660 36 1 1.8765 -1.3631 -2.1639 37 1 2.7529 -2.7755 -1.4883 38 1 -0.2012 -2.1829 -1.5010 39 1 0.6337 -3.7599 -1.4953 40 1 -2.1910 -4.6368 -1.5016 41 1 2.3446 -3.0180 1.2961 42 1 1.3159 -1.7056 1.9475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032866479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:18 Heat of formation + Delta-G solvation = -29.903499 kcal Electronic energy + Delta-G solvation = -21562.900949 eV Core-core repulsion = 18542.619218 eV Total energy + Delta-G solvation = -3020.281731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.52756 -39.43570 -37.79870 -35.85574 -34.03174 -31.36410 -30.24562 -29.58955 -29.07379 -27.54322 -26.19897 -23.36676 -21.96260 -21.60732 -20.95068 -19.58938 -18.91383 -18.55201 -17.34616 -16.70677 -16.54857 -16.06022 -15.83501 -15.50224 -15.05545 -14.48614 -14.32803 -14.07580 -13.85619 -13.47248 -13.44900 -13.04655 -12.81248 -12.77318 -12.65219 -12.33682 -12.24317 -12.08661 -12.00504 -11.94958 -11.83659 -11.76730 -11.65242 -11.50774 -11.35084 -10.71692 -10.63960 -9.65798 -8.78806 -7.80971 -5.18292 1.49950 1.50653 1.59448 1.62079 2.05738 2.51723 3.37542 3.47012 3.63746 3.67624 3.76673 3.90528 3.98615 4.18008 4.28190 4.38626 4.49878 4.55404 4.57568 4.61878 4.69098 4.72800 4.75100 4.82652 4.88181 4.95112 4.99689 5.02812 5.10724 5.20877 5.25790 5.29098 5.40161 5.48390 5.49466 5.61325 5.70539 5.78924 6.20494 6.52430 7.11872 7.18629 7.77886 8.43231 9.27926 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027998 B = 0.005190 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.840610 B = 5393.768825 C = 5825.442504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.591 5.591 3 C 0.513 3.487 4 O -0.585 6.585 5 C -0.109 4.109 6 C -0.113 4.113 7 C -0.116 4.116 8 C -0.121 4.121 9 C -0.118 4.118 10 C 0.132 3.868 11 H 0.102 0.898 12 C -0.141 4.141 13 C 0.189 3.811 14 N -0.613 5.613 15 C -0.237 4.237 16 H 0.082 0.918 17 C -0.057 4.057 18 N -0.947 5.947 19 Si 0.973 3.027 20 H -0.285 1.285 21 H -0.300 1.300 22 H -0.270 1.270 23 C 0.127 3.873 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.043 0.957 27 H 0.112 0.888 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.012 0.988 39 H 0.017 0.983 40 H 0.246 0.754 41 H 0.035 0.965 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.364 16.122 1.015 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.321 5.321 3 C 0.303 3.697 4 O -0.466 6.466 5 C -0.130 4.130 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.158 4.158 9 C -0.156 4.156 10 C 0.027 3.973 11 H 0.119 0.881 12 C -0.181 4.181 13 C 0.064 3.936 14 N -0.339 5.339 15 C -0.365 4.365 16 H 0.100 0.900 17 C -0.250 4.250 18 N -0.596 5.596 19 Si 0.802 3.198 20 H -0.212 1.212 21 H -0.227 1.227 22 H -0.195 1.195 23 C 0.001 3.999 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.130 0.870 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.030 0.970 39 H 0.035 0.965 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.800 15.984 0.939 16.456 hybrid contribution -0.826 -1.131 0.070 1.402 sum 2.974 14.853 1.009 15.181 Atomic orbital electron populations 1.22032 0.78156 1.04162 1.02044 1.47752 1.07796 1.04989 1.71608 1.21261 0.87581 0.86224 0.74653 1.90590 1.15961 1.87635 1.52428 1.22015 0.98324 0.91033 1.01599 1.22406 0.99971 0.98023 0.94688 1.22518 0.96858 0.93834 1.02159 1.22347 0.96871 0.99657 0.96957 1.22161 0.99010 0.94492 0.99923 1.22055 0.96271 0.83134 0.95795 0.88058 1.23096 0.98866 0.98979 0.97113 1.20888 0.91972 0.96534 0.84187 1.44746 1.18121 1.69138 1.01934 1.19354 0.96827 1.28680 0.91675 0.90005 1.25530 1.01892 1.01142 0.96454 1.70177 1.34243 1.48523 1.06659 0.85149 0.79872 0.76981 0.77843 1.21222 1.22697 1.19503 1.21955 0.89442 0.93684 0.94810 0.90233 0.89123 0.93807 0.87014 0.93154 0.89678 0.89544 0.90592 0.89735 0.92801 0.89846 0.91968 0.91387 0.90266 0.96976 0.96463 0.94476 0.94701 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.57 7.83 127.77 1.00 3.57 16 2 N -0.59 -19.92 2.91 -814.84 -2.37 -22.29 16 3 C 0.51 16.49 6.85 87.66 0.60 17.09 16 4 O -0.59 -22.40 14.67 -3.02 -0.04 -22.45 16 5 C -0.11 -2.55 2.39 -10.82 -0.03 -2.58 16 6 C -0.11 -2.35 5.38 31.69 0.17 -2.18 16 7 C -0.12 -1.86 6.91 31.91 0.22 -1.64 16 8 C -0.12 -2.14 6.83 31.67 0.22 -1.92 16 9 C -0.12 -2.54 6.39 31.32 0.20 -2.34 16 10 C 0.13 4.85 3.61 46.38 0.17 5.02 16 11 H 0.10 3.67 7.11 -2.39 -0.02 3.66 16 12 C -0.14 -5.42 6.55 31.78 0.21 -5.21 16 13 C 0.19 9.02 4.48 86.73 0.39 9.41 16 14 N -0.61 -29.59 1.92 -691.86 -1.33 -30.92 16 15 C -0.24 -12.46 9.72 84.03 0.82 -11.65 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 17 C -0.06 -3.06 5.46 84.86 0.46 -2.60 16 18 N -0.95 -54.78 10.42 21.65 0.23 -54.55 16 19 Si 0.97 43.91 29.56 68.60 2.03 45.94 16 20 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 C 0.13 5.11 6.16 86.84 0.54 5.64 16 24 H 0.08 3.17 5.14 -2.39 -0.01 3.16 16 25 H 0.09 2.29 5.36 -2.39 -0.01 2.27 16 26 H 0.04 1.50 7.47 -2.39 -0.02 1.48 16 27 H 0.11 2.26 7.18 -2.39 -0.02 2.24 16 28 H 0.05 1.24 7.85 -2.39 -0.02 1.22 16 29 H 0.08 1.60 7.25 -2.39 -0.02 1.58 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.70 6.42 -2.39 -0.02 1.68 16 36 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.01 0.63 6.76 -2.38 -0.02 0.61 16 39 H 0.02 0.95 7.08 -2.39 -0.02 0.93 16 40 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.05 1.91 8.13 -2.38 -0.02 1.89 16 Total: -1.00 -63.56 316.38 4.46 -59.10 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.99 Total: 14.56 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 4.96 Total: 10.61 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -3.47 Total: -107.76 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.04 Total: -22.45 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -63.56 4.46 -59.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032866479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.196 kcal (2) G-P(sol) polarization free energy of solvation -63.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds