Wall clock time and date at job start Mon Mar 30 2020 00:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 120.00352 * 2 1 4 4 O 1.21280 * 120.00148 * 185.05029 * 3 2 1 5 5 C 1.50706 * 119.99589 * 5.04825 * 3 2 1 6 6 C 1.53875 * 110.02909 * 209.71548 * 5 3 2 7 7 C 1.54259 * 106.59994 * 240.71565 * 6 5 3 8 8 C 1.54889 * 104.19756 * 336.39008 * 7 6 5 9 9 C 1.54258 * 110.03210 * 92.55218 * 5 3 2 10 10 C 1.46503 * 119.99934 * 180.02562 * 2 1 3 11 11 H 1.08996 * 110.63985 * 181.68972 * 10 2 1 12 12 C 1.55160 * 110.71842 * 305.02155 * 10 2 1 13 13 C 1.54904 * 101.58149 * 153.86293 * 12 10 2 14 14 N 1.47426 * 104.83416 * 322.99634 * 13 12 10 15 15 C 1.36931 * 125.64725 * 204.09123 * 14 13 12 16 16 H 1.08010 * 120.00163 * 163.41759 * 15 14 13 17 17 C 1.38818 * 120.00355 * 343.41986 * 15 14 13 18 18 N 1.31616 * 119.99384 * 353.07731 * 17 15 14 19 19 Si 1.86798 * 120.00360 * 173.07876 * 17 15 14 20 20 H 1.48502 * 109.47152 * 94.95861 * 19 17 15 21 21 H 1.48492 * 109.47078 * 214.96177 * 19 17 15 22 22 H 1.48507 * 109.47176 * 334.96483 * 19 17 15 23 23 C 1.47014 * 108.70155 * 24.12356 * 14 13 12 24 24 H 1.08996 * 109.47156 * 84.23097 * 1 2 3 25 25 H 1.09002 * 109.47355 * 204.23576 * 1 2 3 26 26 H 1.08997 * 109.47124 * 324.23429 * 1 2 3 27 27 H 1.08998 * 110.05496 * 331.12874 * 5 3 2 28 28 H 1.08998 * 110.03478 * 0.02562 * 6 5 3 29 29 H 1.09002 * 110.02888 * 121.43093 * 6 5 3 30 30 H 1.09005 * 110.48715 * 95.06825 * 7 6 5 31 31 H 1.08998 * 110.49076 * 217.71161 * 7 6 5 32 32 H 1.08996 * 110.75541 * 279.63084 * 8 7 6 33 33 H 1.08996 * 110.91734 * 156.32591 * 8 7 6 34 34 H 1.09000 * 110.48742 * 261.57294 * 9 5 3 35 35 H 1.08999 * 110.49024 * 24.07876 * 9 5 3 36 36 H 1.08999 * 111.00629 * 271.93966 * 12 10 2 37 37 H 1.09003 * 111.00126 * 35.79222 * 12 10 2 38 38 H 1.08997 * 110.37180 * 204.15027 * 13 12 10 39 39 H 1.09008 * 110.36427 * 81.82813 * 13 12 10 40 40 H 0.97008 * 119.99614 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.88400 * 239.52445 * 23 14 13 42 42 H 1.09007 * 109.88363 * 118.36279 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3482 1.1692 -0.0925 5 6 1.3898 2.4698 0.1149 6 6 2.1584 3.5859 -0.6141 7 6 2.5021 4.6505 0.4481 8 6 1.4423 4.4365 1.5572 9 6 1.2932 2.8951 1.5945 10 6 2.1975 -1.2688 -0.0006 11 1 3.2725 -1.0917 0.0296 12 6 1.7507 -2.1611 1.1875 13 6 2.0636 -3.5785 0.6468 14 7 1.7323 -3.5166 -0.7884 15 6 1.4003 -4.5853 -1.5776 16 1 0.9198 -4.4237 -2.5314 17 6 1.6812 -5.8764 -1.1520 18 7 2.3864 -6.0696 -0.0576 19 14 1.0584 -7.3394 -2.1323 20 1 2.1179 -7.7960 -3.0673 21 1 0.7077 -8.4441 -1.2040 22 1 -0.1456 -6.9411 -2.9051 23 6 1.8182 -2.1177 -1.2322 24 1 -0.3633 0.1033 -1.0224 25 1 -0.3634 -0.9371 0.4218 26 1 -0.3633 0.8338 0.6006 27 1 0.3913 2.3654 -0.3097 28 1 3.0730 3.1853 -1.0512 29 1 1.5329 4.0231 -1.3923 30 1 3.5051 4.4865 0.8421 31 1 2.4160 5.6519 0.0264 32 1 0.4985 4.9094 1.2860 33 1 1.8003 4.8132 2.5153 34 1 0.3249 2.6155 2.0094 35 1 2.0996 2.4458 2.1741 36 1 2.3372 -1.9453 2.0805 37 1 0.6849 -2.0446 1.3844 38 1 1.4429 -4.3214 1.1477 39 1 3.1198 -3.8117 0.7825 40 1 2.5824 -6.9718 0.2401 41 1 0.8540 -1.7930 -1.6235 42 1 2.5848 -2.0189 -2.0008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032866484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:20 Heat of formation + Delta-G solvation = -19.502882 kcal Electronic energy + Delta-G solvation = -20993.193705 eV Core-core repulsion = 17973.362979 eV Total energy + Delta-G solvation = -3019.830726 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27279 -37.93079 -36.65005 -34.75115 -32.17554 -29.75939 -28.92866 -28.84435 -27.49750 -26.44396 -24.45028 -22.01897 -20.87704 -20.26624 -19.61671 -18.48738 -17.52825 -16.90838 -16.03632 -15.52310 -15.06651 -14.71608 -14.48297 -14.07066 -13.62432 -13.54632 -13.07207 -12.86636 -12.46744 -12.14144 -11.97932 -11.79392 -11.61446 -11.40445 -11.26182 -11.23696 -10.94969 -10.88930 -10.85439 -10.81637 -10.59744 -10.40139 -10.07833 -9.85978 -9.73448 -9.45131 -8.60158 -8.30859 -6.76183 -5.76726 -3.12612 2.77198 3.19406 3.38999 3.44494 3.46488 4.35199 4.47615 4.49860 4.54352 4.93855 5.19971 5.22914 5.28863 5.35216 5.38787 5.43715 5.44871 5.50899 5.51507 5.60950 5.68083 5.73940 5.74766 5.76782 5.89504 5.96260 6.02014 6.14407 6.19293 6.22528 6.37664 6.53305 6.59560 6.74209 7.01840 7.41000 7.58186 7.66873 7.75789 8.25049 8.38950 9.17434 9.78886 10.48446 11.36690 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.050008 B = 0.003903 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.781411 B = 7172.554148 C = 7236.958075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.602 5.602 3 C 0.518 3.482 4 O -0.543 6.543 5 C -0.114 4.114 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.123 4.123 9 C -0.109 4.109 10 C 0.126 3.874 11 H 0.103 0.897 12 C -0.154 4.154 13 C 0.177 3.823 14 N -0.600 5.600 15 C -0.232 4.232 16 H 0.074 0.926 17 C -0.003 4.003 18 N -0.915 5.915 19 Si 0.911 3.089 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.129 3.871 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.034 0.966 40 H 0.254 0.746 41 H 0.026 0.974 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 19.106 3.580 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.333 5.333 3 C 0.305 3.695 4 O -0.421 6.421 5 C -0.135 4.135 6 C -0.152 4.152 7 C -0.160 4.160 8 C -0.160 4.160 9 C -0.147 4.147 10 C 0.023 3.977 11 H 0.121 0.879 12 C -0.194 4.194 13 C 0.051 3.949 14 N -0.327 5.327 15 C -0.361 4.361 16 H 0.092 0.908 17 C -0.201 4.201 18 N -0.562 5.562 19 Si 0.741 3.259 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.003 3.997 24 H 0.074 0.926 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.604 18.858 3.530 19.730 hybrid contribution -0.395 -0.965 -0.553 1.180 sum -4.999 17.893 2.977 18.815 Atomic orbital electron populations 1.21790 0.79948 1.03381 1.01642 1.47883 1.06901 1.06001 1.72557 1.20578 0.87952 0.85186 0.75735 1.90659 1.14359 1.87129 1.49943 1.21990 1.00169 0.93110 0.98270 1.22116 1.00882 0.94470 0.97715 1.22339 0.99342 0.98363 0.95927 1.22491 0.99228 0.95268 0.99017 1.22275 1.02317 0.96183 0.93920 1.22211 0.97181 0.81488 0.96807 0.87921 1.23385 1.00567 0.98781 0.96625 1.21322 0.99049 0.90348 0.84138 1.44384 1.81530 1.00958 1.05782 1.18985 1.32012 0.84016 1.01081 0.90827 1.24938 0.99265 0.97607 0.98274 1.69945 1.41616 1.20332 1.24263 0.86121 0.78360 0.82370 0.79005 1.21512 1.21605 1.20538 1.21536 0.97827 0.86385 0.93999 0.92624 0.89959 0.91575 0.89021 0.90017 0.91592 0.91347 0.91692 0.91377 0.91394 0.91071 0.91022 0.91957 0.91694 0.91938 0.94845 0.93629 0.95598 0.95718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 8.55 59.85 0.51 1.42 16 2 N -0.60 -9.37 2.88 -171.84 -0.50 -9.87 16 3 C 0.52 8.04 6.58 -10.98 -0.07 7.96 16 4 O -0.54 -10.49 15.09 5.56 0.08 -10.40 16 5 C -0.11 -1.27 2.44 -90.65 -0.22 -1.50 16 6 C -0.11 -1.22 6.32 -25.62 -0.16 -1.39 16 7 C -0.12 -1.12 6.83 -25.08 -0.17 -1.29 16 8 C -0.12 -0.99 6.91 -24.74 -0.17 -1.16 16 9 C -0.11 -1.06 6.25 -25.07 -0.16 -1.21 16 10 C 0.13 2.41 3.35 -66.10 -0.22 2.18 16 11 H 0.10 2.15 7.01 -51.93 -0.36 1.78 16 12 C -0.15 -2.92 6.59 -24.58 -0.16 -3.08 16 13 C 0.18 4.29 5.36 -2.53 -0.01 4.28 16 14 N -0.60 -15.55 3.39 -170.08 -0.58 -16.13 16 15 C -0.23 -6.54 10.21 -15.06 -0.15 -6.69 16 16 H 0.07 2.01 7.84 -52.48 -0.41 1.60 16 17 C 0.00 -0.10 5.41 -17.43 -0.09 -0.19 16 18 N -0.92 -26.99 10.87 55.49 0.60 -26.39 16 19 Si 0.91 22.04 29.56 -169.99 -5.02 17.02 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.13 2.83 6.88 -3.07 -0.02 2.81 16 24 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.08 1.07 6.13 -51.93 -0.32 0.75 16 26 H 0.07 0.61 6.44 -51.93 -0.33 0.27 16 27 H 0.09 0.86 6.50 -51.93 -0.34 0.52 16 28 H 0.08 1.08 6.82 -51.93 -0.35 0.73 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 35 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.14 6.15 -51.93 -0.32 0.82 16 38 H 0.06 1.65 7.31 -51.93 -0.38 1.27 16 39 H 0.03 0.89 7.94 -51.92 -0.41 0.48 16 40 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.03 0.54 7.07 -51.93 -0.37 0.18 16 42 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -32.02 323.27 -8.58 -40.61 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.94 Total: -1.85 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.11 Total: 2.14 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.47 Total: -52.38 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.02 -8.58 -40.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032866484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.105 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds