Wall clock time and date at job start Mon Mar 30 2020 00:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34769 * 120.00210 * 2 1 4 4 O 1.21279 * 120.00383 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.00337 * 0.02562 * 3 2 1 6 6 C 1.52995 * 109.47412 * 179.97438 * 5 3 2 7 7 C 1.53785 * 113.69093 * 85.93670 * 6 5 3 8 8 C 1.53779 * 87.08093 * 139.99088 * 7 6 5 9 9 C 1.53781 * 113.61293 * 183.47294 * 6 5 3 10 10 C 1.46500 * 119.99756 * 180.02562 * 2 1 3 11 11 H 1.08997 * 110.64219 * 178.31127 * 10 2 1 12 12 C 1.55160 * 110.72153 * 54.97260 * 10 2 1 13 13 C 1.54913 * 101.58390 * 277.13972 * 12 10 2 14 14 N 1.47427 * 104.82823 * 322.98939 * 13 12 10 15 15 C 1.36931 * 125.64379 * 204.08922 * 14 13 12 16 16 H 1.08003 * 119.99850 * 180.02562 * 15 14 13 17 17 C 1.38813 * 120.00495 * 0.04418 * 15 14 13 18 18 N 1.31622 * 119.99665 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00230 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47106 * 90.00284 * 19 17 15 21 21 H 1.48505 * 109.46856 * 210.00336 * 19 17 15 22 22 H 1.48504 * 109.46932 * 330.00036 * 19 17 15 23 23 C 1.47019 * 108.70512 * 24.13370 * 14 13 12 24 24 H 1.09000 * 109.46926 * 89.99540 * 1 2 3 25 25 H 1.08994 * 109.47207 * 209.99804 * 1 2 3 26 26 H 1.09001 * 109.46938 * 330.00074 * 1 2 3 27 27 H 1.09005 * 109.46730 * 59.99539 * 5 3 2 28 28 H 1.09004 * 109.46839 * 300.00400 * 5 3 2 29 29 H 1.09002 * 112.85043 * 314.66553 * 6 5 3 30 30 H 1.09003 * 113.60734 * 254.54208 * 7 6 5 31 31 H 1.08996 * 113.61146 * 25.43706 * 7 6 5 32 32 H 1.08994 * 113.61314 * 220.01752 * 8 7 6 33 33 H 1.09003 * 113.61186 * 89.11185 * 8 7 6 34 34 H 1.09005 * 113.61302 * 334.47929 * 9 6 5 35 35 H 1.08993 * 113.62030 * 105.38774 * 9 6 5 36 36 H 1.09006 * 111.00337 * 35.21628 * 12 10 2 37 37 H 1.08997 * 111.00426 * 159.06502 * 12 10 2 38 38 H 1.08994 * 110.36395 * 204.15297 * 13 12 10 39 39 H 1.08997 * 110.45862 * 81.87207 * 13 12 10 40 40 H 0.97000 * 120.00075 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.87656 * 239.52134 * 23 14 13 42 42 H 1.08991 * 109.88946 * 118.36011 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3798 3.6352 0.0011 7 6 2.8572 4.0406 -1.4034 8 6 2.7589 5.5003 -0.9297 9 6 1.7111 5.0173 0.0871 10 6 2.1975 -1.2688 -0.0006 11 1 3.2726 -1.0918 -0.0305 12 6 1.7506 -2.1601 -1.1893 13 6 0.4717 -2.8221 -0.6183 14 7 0.7744 -3.0625 0.8044 15 6 0.1810 -4.0076 1.5979 16 1 0.4737 -4.1048 2.6329 17 6 -0.7965 -4.8411 1.0719 18 7 -1.1526 -4.7233 -0.1898 19 14 -1.6055 -6.1310 2.1542 20 1 -2.8053 -5.5479 2.8066 21 1 -2.0098 -7.2926 1.3219 22 1 -0.6444 -6.5778 3.1943 23 6 1.8181 -2.1187 1.2304 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 0.7591 2.5298 0.8908 28 1 0.7585 2.5302 -0.8892 29 1 3.1915 3.4977 0.7154 30 1 3.8752 3.7218 -1.6274 31 1 2.1503 3.7895 -2.1942 32 1 2.3565 6.1776 -1.6830 33 1 3.6743 5.8727 -0.4698 34 1 0.6908 5.0334 -0.2963 35 1 1.8038 5.4872 1.0661 36 1 1.5192 -1.5550 -2.0660 37 1 2.5075 -2.9091 -1.4222 38 1 0.2723 -3.7645 -1.1282 39 1 -0.3812 -2.1505 -0.7164 40 1 -1.8359 -5.3055 -0.5573 41 1 2.6908 -2.6668 1.5856 42 1 1.4350 -1.4746 2.0218 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032980633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:23 Heat of formation + Delta-G solvation = 13.580828 kcal Electronic energy + Delta-G solvation = -20979.117250 eV Core-core repulsion = 17960.721142 eV Total energy + Delta-G solvation = -3018.396109 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.09799 -38.64094 -37.17550 -34.35304 -32.23064 -30.44714 -29.08127 -27.91156 -26.06397 -25.67724 -24.50364 -23.51820 -20.54356 -20.13641 -19.41575 -18.48598 -17.02076 -16.83780 -16.08741 -15.45966 -15.20343 -14.76996 -14.56309 -13.81114 -13.73341 -13.40393 -12.69420 -12.59023 -12.53633 -12.21009 -12.06330 -11.81596 -11.76076 -11.56775 -11.50163 -11.05969 -10.90317 -10.80569 -10.68319 -10.39996 -10.25699 -10.24697 -10.12999 -9.86905 -9.55612 -9.30478 -8.67369 -8.20427 -6.87058 -5.68724 -3.10700 2.91836 3.34060 3.38005 3.43368 3.45006 4.45925 4.47228 4.55135 4.62927 4.77458 4.96621 5.28614 5.37644 5.42630 5.45737 5.49414 5.51716 5.60134 5.62620 5.68114 5.74667 5.76909 5.85192 5.87624 5.95426 6.01294 6.19371 6.25579 6.31956 6.39129 6.44932 6.57197 6.61671 6.73053 7.07523 7.45244 7.59914 7.78780 7.83338 8.32493 8.49441 9.18643 9.79129 10.43821 11.34698 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.044267 B = 0.003951 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.380179 B = 7085.831268 C = 7209.428238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.596 5.596 3 C 0.511 3.489 4 O -0.552 6.552 5 C -0.130 4.130 6 C -0.093 4.093 7 C -0.134 4.134 8 C -0.143 4.143 9 C -0.139 4.139 10 C 0.125 3.875 11 H 0.098 0.902 12 C -0.154 4.154 13 C 0.145 3.855 14 N -0.603 5.603 15 C -0.222 4.222 16 H 0.077 0.923 17 C -0.010 4.010 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.127 3.873 24 H 0.053 0.947 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.022 0.978 40 H 0.252 0.748 41 H 0.032 0.968 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.248 16.286 -2.181 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.328 5.328 3 C 0.299 3.701 4 O -0.430 6.430 5 C -0.170 4.170 6 C -0.112 4.112 7 C -0.171 4.171 8 C -0.180 4.180 9 C -0.176 4.176 10 C 0.021 3.979 11 H 0.116 0.884 12 C -0.194 4.194 13 C 0.020 3.980 14 N -0.330 5.330 15 C -0.351 4.351 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.571 5.571 19 Si 0.745 3.255 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.000 4.000 24 H 0.071 0.929 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.039 0.961 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.718 16.096 -2.186 16.664 hybrid contribution -0.648 -0.728 0.557 1.123 sum 3.070 15.368 -1.629 15.756 Atomic orbital electron populations 1.22084 0.79272 1.04110 1.01848 1.47852 1.07269 1.05645 1.72027 1.20661 0.88051 0.85392 0.75966 1.90636 1.14066 1.87504 1.50833 1.21712 0.98980 0.92256 1.04009 1.22323 0.97954 0.92150 0.98746 1.22923 1.02005 0.95556 0.96614 1.22798 0.99402 0.96835 0.99002 1.22987 0.98683 0.96380 0.99573 1.22120 0.96470 0.82353 0.96943 0.88358 1.23339 1.01508 0.98249 0.96275 1.22119 0.90537 1.00651 0.84671 1.44550 1.42721 1.37678 1.08026 1.19078 1.14816 1.08360 0.92825 0.90529 1.24773 0.99412 0.99872 0.96502 1.69801 1.34017 1.41183 1.12056 0.86078 0.79276 0.81020 0.79146 1.21657 1.21675 1.20727 1.21637 0.92705 0.91414 0.94219 0.92866 0.88027 0.92202 0.88976 0.89109 0.88396 0.91303 0.90458 0.91697 0.90350 0.90133 0.91574 0.92143 0.91138 0.87717 0.96064 0.93744 0.95042 0.95612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 8.34 59.85 0.50 1.57 16 2 N -0.60 -9.99 2.82 -171.84 -0.49 -10.47 16 3 C 0.51 8.16 7.67 -10.99 -0.08 8.08 16 4 O -0.55 -10.47 15.16 5.56 0.08 -10.38 16 5 C -0.13 -1.52 4.08 -27.88 -0.11 -1.63 16 6 C -0.09 -1.03 3.11 -89.81 -0.28 -1.31 16 7 C -0.13 -1.42 7.64 -25.92 -0.20 -1.61 16 8 C -0.14 -1.25 8.08 -25.92 -0.21 -1.46 16 9 C -0.14 -1.22 7.64 -25.92 -0.20 -1.41 16 10 C 0.12 2.35 3.58 -66.09 -0.24 2.12 16 11 H 0.10 1.88 6.99 -51.93 -0.36 1.52 16 12 C -0.15 -2.98 6.53 -24.58 -0.16 -3.14 16 13 C 0.14 3.36 5.00 -2.53 -0.01 3.35 16 14 N -0.60 -14.98 2.97 -170.08 -0.50 -15.48 16 15 C -0.22 -6.06 10.27 -15.06 -0.15 -6.21 16 16 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 18 N -0.92 -26.06 10.09 55.49 0.56 -25.50 16 19 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 C 0.13 2.71 6.24 -3.07 -0.02 2.69 16 24 H 0.05 0.77 7.99 -51.93 -0.41 0.35 16 25 H 0.10 1.93 5.19 -51.93 -0.27 1.66 16 26 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 27 H 0.09 0.96 7.40 -51.93 -0.38 0.57 16 28 H 0.09 0.93 7.85 -51.93 -0.41 0.53 16 29 H 0.10 1.25 7.73 -51.93 -0.40 0.85 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.11 2.79 5.87 -51.93 -0.30 2.49 16 39 H 0.02 0.50 5.54 -51.93 -0.29 0.22 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 LS Contribution 323.81 15.07 4.88 4.88 Total: -1.00 -29.96 323.81 -8.68 -38.64 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.92 Total: 1.01 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.26 Total: 0.64 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.43 Total: -51.45 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.96 -8.68 -38.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032980633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.217 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds