Wall clock time and date at job start Mon Mar 30 2020 00:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47035 * 2 1 4 4 N 1.46905 * 109.46753 * 180.02562 * 3 2 1 5 5 C 1.46900 * 110.99903 * 66.04394 * 4 3 2 6 6 C 1.38582 * 110.99480 * 189.99942 * 4 3 2 7 7 N 1.31217 * 126.47450 * 303.77192 * 6 4 3 8 8 N 1.28525 * 109.86011 * 180.02562 * 7 6 4 9 9 C 1.30290 * 110.05748 * 0.02562 * 8 7 6 10 10 C 1.50701 * 126.35152 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46791 * 245.99478 * 10 9 8 12 12 C 1.52997 * 109.47176 * 125.99747 * 10 9 8 13 13 C 1.50700 * 109.46890 * 5.99180 * 10 9 8 14 14 H 1.08000 * 120.00124 * 243.61691 * 13 10 9 15 15 C 1.37878 * 119.99627 * 63.62223 * 13 10 9 16 16 N 1.31516 * 119.99659 * 181.95568 * 15 13 10 17 17 Si 1.86796 * 120.00165 * 2.22677 * 15 13 10 18 18 H 1.48500 * 109.47312 * 84.59235 * 17 15 13 19 19 H 1.48500 * 109.47102 * 204.59364 * 17 15 13 20 20 H 1.48503 * 109.47347 * 324.58883 * 17 15 13 21 21 N 1.36452 * 126.47213 * 124.09261 * 6 4 3 22 22 C 1.46502 * 127.13817 * 359.97438 * 21 6 4 23 23 H 1.09004 * 109.47110 * 59.99987 * 1 2 3 24 24 H 1.09000 * 109.47030 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46697 * 300.00089 * 1 2 3 26 26 H 1.09004 * 109.46697 * 239.99911 * 2 1 3 27 27 H 1.08995 * 109.47121 * 119.99819 * 2 1 3 28 28 H 1.08991 * 109.47195 * 60.00170 * 3 2 1 29 29 H 1.09004 * 109.47182 * 299.99969 * 3 2 1 30 30 H 1.09005 * 109.46761 * 182.44630 * 5 4 3 31 31 H 1.08991 * 109.47231 * 302.45345 * 5 4 3 32 32 H 1.09002 * 109.47069 * 62.45338 * 5 4 3 33 33 H 1.08996 * 109.47269 * 185.71259 * 11 10 9 34 34 H 1.08998 * 109.47815 * 305.72066 * 11 10 9 35 35 H 1.09010 * 109.47143 * 65.71934 * 11 10 9 36 36 H 1.09003 * 109.47042 * 307.07944 * 12 10 9 37 37 H 1.08994 * 109.47611 * 67.08928 * 12 10 9 38 38 H 1.09005 * 109.46873 * 187.08750 * 12 10 9 39 39 H 0.97001 * 119.99822 * 179.97438 * 16 15 13 40 40 H 1.08995 * 109.47339 * 272.51599 * 22 21 6 41 41 H 1.09004 * 109.46772 * 32.51938 * 22 21 6 42 42 H 1.09005 * 109.47191 * 152.51238 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0349 0.8858 -1.2542 6 6 4.0057 2.7166 0.2240 7 7 3.7374 3.7931 -0.4765 8 7 4.3700 4.8002 0.0108 9 6 5.0742 4.4289 1.0423 10 6 5.9530 5.3132 1.8889 11 6 7.4142 4.8927 1.7189 12 6 5.5504 5.1755 3.3585 13 6 5.7892 6.7471 1.4553 14 1 6.6287 7.2850 1.0400 15 6 4.5677 7.3724 1.5889 16 7 4.4145 8.6114 1.1751 17 14 3.1325 6.4625 2.3644 18 1 3.2076 6.5873 3.8423 19 1 1.8561 7.0487 1.8824 20 1 3.1927 5.0280 1.9851 21 7 4.8710 3.0873 1.2118 22 6 5.4584 2.2271 2.2420 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9564 -0.8900 30 1 5.1237 0.8573 -1.2106 31 1 3.6502 -0.1245 -1.3927 32 1 3.7211 1.5117 -2.0896 33 1 8.0389 5.4633 2.4061 34 1 7.5139 3.8290 1.9351 35 1 7.7312 5.0863 0.6940 36 1 4.4798 5.3531 3.4601 37 1 5.7867 4.1703 3.7074 38 1 6.0980 5.9052 3.9551 39 1 3.5550 9.0512 1.2688 40 1 4.7884 2.1787 3.1004 41 1 5.6049 1.2252 1.8384 42 1 6.4191 2.6373 2.5535 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121356109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:56 Heat of formation + Delta-G solvation = 101.883738 kcal Electronic energy + Delta-G solvation = -21816.008616 eV Core-core repulsion = 18833.734360 eV Total energy + Delta-G solvation = -2982.274256 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.27942 -37.83713 -35.93272 -34.14357 -33.15584 -31.63612 -28.57365 -27.25904 -27.04087 -26.74493 -25.18511 -24.48712 -21.95870 -21.21700 -19.99066 -19.18084 -17.06272 -16.36635 -15.99056 -15.75903 -15.07817 -14.99483 -14.42132 -14.05014 -13.56082 -13.32714 -13.11822 -12.99673 -12.75983 -12.31210 -12.23465 -12.06037 -11.96322 -11.70352 -11.48461 -11.28373 -11.07286 -10.78159 -10.70677 -10.47700 -10.30724 -10.09476 -9.86567 -9.38357 -9.31619 -9.22173 -8.53730 -8.46224 -7.91376 -6.05687 -4.08386 2.45042 2.83589 3.28673 3.42824 3.49868 3.80040 4.02218 4.48391 4.79816 4.92160 5.04327 5.11982 5.14653 5.25815 5.37672 5.42664 5.48149 5.51744 5.58785 5.64014 5.69385 5.79642 5.86882 5.90618 6.00205 6.03192 6.06250 6.20197 6.22339 6.25413 6.30830 6.51916 6.65177 6.69890 6.81891 6.94645 7.10053 7.33249 7.64174 7.85108 8.47597 8.95109 9.58129 9.68842 11.06643 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022682 B = 0.007086 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.179228 B = 3950.516276 C = 4433.083214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.067 3.933 4 N -0.465 5.465 5 C 0.034 3.966 6 C 0.298 3.702 7 N -0.319 5.319 8 N -0.265 5.265 9 C 0.230 3.770 10 C 0.113 3.887 11 C -0.122 4.122 12 C -0.151 4.151 13 C -0.500 4.500 14 H 0.083 0.917 15 C 0.099 3.901 16 N -0.885 5.885 17 Si 0.901 3.099 18 H -0.293 1.293 19 H -0.303 1.303 20 H -0.268 1.268 21 N -0.476 5.476 22 C 0.082 3.918 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.265 0.735 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 -18.528 1.865 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.060 4.060 4 N -0.189 5.189 5 C -0.114 4.114 6 C -0.058 4.058 7 N -0.164 5.164 8 N -0.104 5.104 9 C -0.037 4.037 10 C 0.110 3.890 11 C -0.180 4.180 12 C -0.208 4.208 13 C -0.538 4.538 14 H 0.101 0.899 15 C -0.106 4.106 16 N -0.521 5.521 17 Si 0.735 3.265 18 H -0.221 1.221 19 H -0.231 1.231 20 H -0.194 1.194 21 N -0.170 5.170 22 C -0.062 4.062 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.746 -17.785 1.142 17.907 hybrid contribution -0.755 -0.884 0.774 1.397 sum -2.501 -18.669 1.916 18.932 Atomic orbital electron populations 1.21725 0.95367 1.01650 1.02134 1.21555 0.95623 0.95916 1.02579 1.22170 0.84298 0.97228 1.02299 1.58594 1.09092 1.15023 1.36240 1.22424 1.00423 0.99566 0.88951 1.22181 0.98547 0.92412 0.92616 1.74547 1.21552 0.96177 1.24103 1.74222 1.08342 1.19028 1.08782 1.26579 0.99718 0.79531 0.97841 1.17292 0.89205 0.93610 0.88937 1.21754 0.96137 0.98053 1.02063 1.22389 1.00869 0.99713 0.97845 1.20516 0.98375 0.91597 1.43277 0.89899 1.24854 0.97917 0.94205 0.93599 1.69859 1.24837 1.12017 1.45413 0.86884 0.82088 0.80534 0.76977 1.22123 1.23112 1.19383 1.46460 1.35945 1.09984 1.24604 1.22008 0.99407 0.94533 0.90215 0.92587 0.92473 0.92632 0.91700 0.91256 0.90965 0.92985 0.91577 0.90412 0.93868 0.91868 0.95052 0.92725 0.93954 0.94685 0.91057 0.92519 0.91193 0.89892 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.21 5.86 -26.73 -0.16 -1.37 16 3 C 0.07 0.95 4.82 -3.82 -0.02 0.93 16 4 N -0.46 -7.16 4.78 -182.38 -0.87 -8.03 16 5 C 0.03 0.44 9.29 60.06 0.56 1.00 16 6 C 0.30 5.93 6.45 -318.87 -2.06 3.87 16 7 N -0.32 -7.64 12.13 30.31 0.37 -7.28 16 8 N -0.27 -7.02 9.45 32.99 0.31 -6.70 16 9 C 0.23 5.35 3.70 -154.01 -0.57 4.78 16 10 C 0.11 2.56 0.49 -156.81 -0.08 2.48 16 11 C -0.12 -2.28 8.32 37.16 0.31 -1.97 16 12 C -0.15 -3.06 7.52 37.16 0.28 -2.78 16 13 C -0.50 -13.87 8.27 -34.44 -0.28 -14.15 16 14 H 0.08 2.47 7.99 -52.49 -0.42 2.05 16 15 C 0.10 2.91 5.17 -17.82 -0.09 2.81 16 16 N -0.89 -27.59 13.96 55.43 0.77 -26.82 16 17 Si 0.90 24.00 22.53 -169.99 -3.83 20.17 16 18 H -0.29 -7.40 6.82 56.52 0.39 -7.01 16 19 H -0.30 -8.42 7.11 56.52 0.40 -8.02 16 20 H -0.27 -7.06 4.78 56.52 0.27 -6.79 16 21 N -0.48 -9.31 3.21 -121.45 -0.39 -9.70 16 22 C 0.08 1.15 9.57 59.85 0.57 1.72 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.59 6.50 -51.93 -0.34 0.26 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 29 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.76 6.36 -51.93 -0.33 0.43 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.03 0.48 5.68 -51.93 -0.30 0.19 16 35 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 36 H 0.04 0.95 2.87 -51.93 -0.15 0.80 16 37 H 0.03 0.57 5.90 -51.93 -0.31 0.26 16 38 H 0.07 1.39 8.13 -51.93 -0.42 0.97 16 39 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 40 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 1.17 4.69 -51.93 -0.24 0.92 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -34.25 318.15 -6.86 -41.11 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -6.85 Total: -3.89 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.17 Total: -3.66 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.19 Total: -58.53 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -3.83 Total: 20.17 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.25 -6.86 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121356109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.996 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds