Wall clock time and date at job start Mon Mar 30 2020 00:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47035 * 2 1 4 4 N 1.46905 * 109.46753 * 180.02562 * 3 2 1 5 5 C 1.46900 * 110.99903 * 66.04394 * 4 3 2 6 6 C 1.38582 * 110.99480 * 189.99942 * 4 3 2 7 7 N 1.31217 * 126.47450 * 303.77192 * 6 4 3 8 8 N 1.28525 * 109.86011 * 180.02562 * 7 6 4 9 9 C 1.30290 * 110.05748 * 0.02562 * 8 7 6 10 10 C 1.50701 * 126.35152 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46791 * 245.99478 * 10 9 8 12 12 C 1.52997 * 109.47176 * 125.99747 * 10 9 8 13 13 C 1.50700 * 109.46890 * 5.99180 * 10 9 8 14 14 H 1.08000 * 120.00124 * 243.61691 * 13 10 9 15 15 C 1.37878 * 119.99627 * 63.62223 * 13 10 9 16 16 N 1.31516 * 119.99659 * 181.95568 * 15 13 10 17 17 Si 1.86796 * 120.00165 * 2.22677 * 15 13 10 18 18 H 1.48500 * 109.47312 * 84.59235 * 17 15 13 19 19 H 1.48500 * 109.47102 * 204.59364 * 17 15 13 20 20 H 1.48503 * 109.47347 * 324.58883 * 17 15 13 21 21 N 1.36452 * 126.47213 * 124.09261 * 6 4 3 22 22 C 1.46502 * 127.13817 * 359.97438 * 21 6 4 23 23 H 1.09004 * 109.47110 * 59.99987 * 1 2 3 24 24 H 1.09000 * 109.47030 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46697 * 300.00089 * 1 2 3 26 26 H 1.09004 * 109.46697 * 239.99911 * 2 1 3 27 27 H 1.08995 * 109.47121 * 119.99819 * 2 1 3 28 28 H 1.08991 * 109.47195 * 60.00170 * 3 2 1 29 29 H 1.09004 * 109.47182 * 299.99969 * 3 2 1 30 30 H 1.09005 * 109.46761 * 182.44630 * 5 4 3 31 31 H 1.08991 * 109.47231 * 302.45345 * 5 4 3 32 32 H 1.09002 * 109.47069 * 62.45338 * 5 4 3 33 33 H 1.08996 * 109.47269 * 185.71259 * 11 10 9 34 34 H 1.08998 * 109.47815 * 305.72066 * 11 10 9 35 35 H 1.09010 * 109.47143 * 65.71934 * 11 10 9 36 36 H 1.09003 * 109.47042 * 307.07944 * 12 10 9 37 37 H 1.08994 * 109.47611 * 67.08928 * 12 10 9 38 38 H 1.09005 * 109.46873 * 187.08750 * 12 10 9 39 39 H 0.97001 * 119.99822 * 179.97438 * 16 15 13 40 40 H 1.08995 * 109.47339 * 272.51599 * 22 21 6 41 41 H 1.09004 * 109.46772 * 32.51938 * 22 21 6 42 42 H 1.09005 * 109.47191 * 152.51238 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0349 0.8858 -1.2542 6 6 4.0057 2.7166 0.2240 7 7 3.7374 3.7931 -0.4765 8 7 4.3700 4.8002 0.0108 9 6 5.0742 4.4289 1.0423 10 6 5.9530 5.3132 1.8889 11 6 7.4142 4.8927 1.7189 12 6 5.5504 5.1755 3.3585 13 6 5.7892 6.7471 1.4553 14 1 6.6287 7.2850 1.0400 15 6 4.5677 7.3724 1.5889 16 7 4.4145 8.6114 1.1751 17 14 3.1325 6.4625 2.3644 18 1 3.2076 6.5873 3.8423 19 1 1.8561 7.0487 1.8824 20 1 3.1927 5.0280 1.9851 21 7 4.8710 3.0873 1.2118 22 6 5.4584 2.2271 2.2420 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9564 -0.8900 30 1 5.1237 0.8573 -1.2106 31 1 3.6502 -0.1245 -1.3927 32 1 3.7211 1.5117 -2.0896 33 1 8.0389 5.4633 2.4061 34 1 7.5139 3.8290 1.9351 35 1 7.7312 5.0863 0.6940 36 1 4.4798 5.3531 3.4601 37 1 5.7867 4.1703 3.7074 38 1 6.0980 5.9052 3.9551 39 1 3.5550 9.0512 1.2688 40 1 4.7884 2.1787 3.1004 41 1 5.6049 1.2252 1.8384 42 1 6.4191 2.6373 2.5535 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121356109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:55 Heat of formation + Delta-G solvation = 78.116825 kcal Electronic energy + Delta-G solvation = -21817.039226 eV Core-core repulsion = 18833.734360 eV Total energy + Delta-G solvation = -2983.304867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.92090 -39.08106 -37.63473 -35.67014 -34.21630 -33.68082 -30.14597 -28.53449 -28.32255 -28.09440 -27.08288 -25.79249 -23.60201 -22.30682 -21.37190 -20.96194 -18.85119 -17.89305 -17.57533 -17.13819 -16.71111 -16.24583 -15.79580 -15.62905 -15.03147 -14.67054 -14.61514 -14.45072 -13.96203 -13.90243 -13.52580 -13.22291 -13.06511 -12.92772 -12.84766 -12.60466 -12.53830 -12.31835 -12.09412 -12.04641 -12.03807 -11.60294 -11.48152 -11.34156 -11.01959 -10.88868 -10.69632 -9.89317 -9.65355 -8.32108 -6.34685 0.87634 1.14184 1.30884 1.34102 1.43081 2.03968 2.30903 2.76783 3.10126 3.70031 3.82615 3.88628 4.04008 4.16548 4.18511 4.32257 4.38213 4.39924 4.42091 4.50068 4.52215 4.62154 4.67775 4.73161 4.74419 4.78357 4.87673 4.94286 4.99103 5.08033 5.14154 5.19658 5.25361 5.36623 5.40229 5.50187 5.64334 5.66579 5.76419 6.26367 6.36562 6.71451 7.35164 7.99584 8.84417 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022682 B = 0.007086 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.179228 B = 3950.516276 C = 4433.083214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 C 0.067 3.933 4 N -0.453 5.453 5 C 0.034 3.966 6 C 0.319 3.681 7 N -0.365 5.365 8 N -0.326 5.326 9 C 0.221 3.779 10 C 0.106 3.894 11 C -0.116 4.116 12 C -0.147 4.147 13 C -0.492 4.492 14 H 0.047 0.953 15 C 0.050 3.950 16 N -0.938 5.938 17 Si 0.955 3.045 18 H -0.269 1.269 19 H -0.330 1.330 20 H -0.264 1.264 21 N -0.472 5.472 22 C 0.068 3.932 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.020 0.980 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.261 0.739 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -22.992 3.563 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C -0.060 4.060 4 N -0.179 5.179 5 C -0.113 4.113 6 C -0.038 4.038 7 N -0.209 5.209 8 N -0.164 5.164 9 C -0.048 4.048 10 C 0.103 3.897 11 C -0.174 4.174 12 C -0.205 4.205 13 C -0.529 4.529 14 H 0.065 0.935 15 C -0.149 4.149 16 N -0.577 5.577 17 Si 0.789 3.211 18 H -0.197 1.197 19 H -0.261 1.261 20 H -0.189 1.189 21 N -0.165 5.165 22 C -0.073 4.073 23 H 0.069 0.931 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.043 0.957 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.207 -22.293 2.873 22.510 hybrid contribution -0.849 0.376 0.170 0.944 sum -2.056 -21.917 3.043 22.223 Atomic orbital electron populations 1.21736 0.94616 1.02868 1.01624 1.21502 0.96128 0.92848 1.03883 1.22253 0.83461 0.99856 1.00450 1.58973 1.09687 1.11842 1.37395 1.22555 1.00806 1.00991 0.86956 1.22663 0.96760 0.93137 0.91261 1.74426 1.23220 0.97183 1.26094 1.74098 1.10282 1.21178 1.10850 1.26197 0.99762 0.81347 0.97459 1.17365 0.91727 0.90422 0.90205 1.21708 0.93440 1.00860 1.01413 1.22300 0.99327 1.02966 0.95862 1.20830 0.96650 0.94384 1.41080 0.93480 1.25475 1.00261 0.94574 0.94599 1.69996 1.25171 1.13881 1.48697 0.86048 0.78312 0.79428 0.77344 1.19657 1.26082 1.18923 1.46560 1.35547 1.09108 1.25264 1.22489 1.00212 0.95050 0.89517 0.93079 0.90333 0.93301 0.89978 0.90184 0.93031 0.94809 0.91201 0.86417 0.95725 0.90350 0.91031 0.94704 0.96121 0.89865 0.90366 0.92978 0.89537 0.87066 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.11 -1.78 5.86 30.60 0.18 -1.60 16 3 C 0.07 1.78 4.82 86.30 0.42 2.19 16 4 N -0.45 -12.74 4.78 -730.91 -3.49 -16.23 16 5 C 0.03 0.77 9.29 127.69 1.19 1.96 16 6 C 0.32 12.19 6.45 260.11 1.68 13.86 16 7 N -0.37 -17.68 12.13 -58.00 -0.70 -18.38 16 8 N -0.33 -17.52 9.45 -49.54 -0.47 -17.99 16 9 C 0.22 10.05 3.70 137.64 0.51 10.56 16 10 C 0.11 4.66 0.49 -53.67 -0.03 4.64 16 11 C -0.12 -4.05 8.32 71.98 0.60 -3.45 16 12 C -0.15 -5.51 7.52 71.98 0.54 -4.97 16 13 C -0.49 -27.90 8.27 25.60 0.21 -27.69 16 14 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 15 C 0.05 3.04 5.17 84.65 0.44 3.48 16 16 N -0.94 -61.36 13.96 21.45 0.30 -61.06 16 17 Si 0.96 50.97 22.53 68.60 1.55 52.52 16 18 H -0.27 -13.08 6.82 99.48 0.68 -12.40 16 19 H -0.33 -18.87 7.11 99.48 0.71 -18.16 16 20 H -0.26 -13.74 4.78 99.48 0.48 -13.27 16 21 N -0.47 -17.13 3.21 -538.17 -1.73 -18.86 16 22 C 0.07 1.56 9.57 127.77 1.22 2.79 16 23 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 1.13 6.50 -2.39 -0.02 1.11 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.57 8.05 -2.39 -0.02 1.55 16 29 H 0.03 1.01 8.12 -2.38 -0.02 0.99 16 30 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.12 1.76 6.36 -2.39 -0.02 1.75 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 1.89 5.68 -2.39 -0.01 1.88 16 35 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.02 0.86 2.87 -2.39 -0.01 0.86 16 37 H 0.08 2.29 5.90 -2.39 -0.01 2.27 16 38 H 0.08 2.81 8.13 -2.38 -0.02 2.79 16 39 H 0.26 16.39 8.31 -92.71 -0.77 15.62 16 40 H 0.09 1.77 8.11 -2.39 -0.02 1.75 16 41 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.11 2.10 4.69 -2.38 -0.01 2.09 16 Total: -1.00 -80.36 318.15 3.86 -76.50 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 0.74 Total: 3.34 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 7.67 Total: 0.16 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -6.09 Total: -132.52 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 1.55 Total: 52.52 kcal Total: -80.36 3.86 -76.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121356109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.617 kcal (2) G-P(sol) polarization free energy of solvation -80.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds