Wall clock time and date at job start Mon Mar 30 2020 00:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47329 * 2 1 4 4 N 1.46902 * 109.47204 * 180.02562 * 3 2 1 5 5 C 1.46893 * 111.00308 * 66.04467 * 4 3 2 6 6 C 1.38582 * 110.99787 * 190.00039 * 4 3 2 7 7 N 1.31210 * 126.47451 * 302.90171 * 6 4 3 8 8 N 1.28526 * 109.86412 * 179.69799 * 7 6 4 9 9 C 1.30296 * 110.05070 * 0.44822 * 8 7 6 10 10 C 1.50704 * 126.34928 * 179.82243 * 9 8 7 11 11 H 1.09001 * 109.47349 * 179.68874 * 10 9 8 12 12 C 1.52999 * 109.46975 * 59.69136 * 10 9 8 13 13 C 1.53002 * 109.46860 * 299.69398 * 10 9 8 14 14 C 1.50707 * 109.46639 * 184.99943 * 13 10 9 15 15 H 1.07997 * 119.99927 * 359.97438 * 14 13 10 16 16 C 1.37878 * 119.99620 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99985 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99687 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47253 * 89.99750 * 18 16 14 20 20 H 1.48499 * 109.47184 * 209.99549 * 18 16 14 21 21 H 1.48503 * 109.47328 * 329.99796 * 18 16 14 22 22 N 1.36455 * 126.47191 * 122.86211 * 6 4 3 23 23 C 1.46500 * 127.13799 * 0.02562 * 22 6 4 24 24 H 1.09000 * 109.47279 * 60.00192 * 1 2 3 25 25 H 1.08996 * 109.47499 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47102 * 299.99890 * 1 2 3 27 27 H 1.09008 * 109.47125 * 240.00057 * 2 1 3 28 28 H 1.08998 * 109.47530 * 120.00280 * 2 1 3 29 29 H 1.08998 * 109.46938 * 60.00010 * 3 2 1 30 30 H 1.09002 * 109.47239 * 299.99856 * 3 2 1 31 31 H 1.09002 * 109.47055 * 177.59330 * 5 4 3 32 32 H 1.09003 * 109.47004 * 297.59337 * 5 4 3 33 33 H 1.08995 * 109.47379 * 57.59449 * 5 4 3 34 34 H 1.09003 * 109.47071 * 59.99523 * 12 10 9 35 35 H 1.09004 * 109.47205 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47391 * 300.00013 * 12 10 9 37 37 H 1.08992 * 109.47300 * 65.00182 * 13 10 9 38 38 H 1.08998 * 109.47130 * 304.99135 * 13 10 9 39 39 H 0.97000 * 119.99698 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.47376 * 263.83838 * 23 22 6 41 41 H 1.09005 * 109.46676 * 23.83877 * 23 22 6 42 42 H 1.09002 * 109.46917 * 143.83344 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0350 0.8858 -1.2541 6 6 4.0057 2.7165 0.2240 7 7 3.7499 3.7899 -0.4860 8 7 4.3728 4.7994 0.0087 9 6 5.0648 4.4312 1.0494 10 6 5.9331 5.3182 1.9041 11 1 6.3801 4.7275 2.7037 12 6 5.0808 6.4348 2.5104 13 6 7.0394 5.9312 1.0432 14 6 7.9791 6.7191 1.9192 15 1 7.8044 6.7771 2.9834 16 6 9.0612 7.3667 1.3618 17 7 9.2736 7.2964 0.0658 18 14 10.2256 8.3440 2.4475 19 1 11.3173 7.4581 2.9257 20 1 10.8051 9.4666 1.6671 21 1 9.4800 8.8839 3.6128 22 7 4.8527 3.0919 1.2259 23 6 5.4174 2.2375 2.2734 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.1237 0.9369 -1.2458 32 1 3.7207 -0.1535 -1.3502 33 1 3.6507 1.4609 -2.0965 34 1 4.2926 5.9981 3.1236 35 1 5.7089 7.0766 3.1282 36 1 4.6338 7.0256 1.7108 37 1 6.5962 6.5925 0.2988 38 1 7.5913 5.1367 0.5409 39 1 10.0351 7.7518 -0.3262 40 1 4.8102 2.3184 3.1749 41 1 5.4255 1.2021 1.9325 42 1 6.4366 2.5560 2.4919 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121420264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:04 Heat of formation + Delta-G solvation = 67.543994 kcal Electronic energy + Delta-G solvation = -20586.972316 eV Core-core repulsion = 17603.208977 eV Total energy + Delta-G solvation = -2983.763339 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.57799 -37.99793 -35.31899 -34.47783 -33.36132 -32.14899 -28.80711 -27.39940 -27.21294 -26.92266 -24.96164 -24.05804 -22.10112 -21.31985 -20.41082 -19.05599 -16.98449 -16.47491 -16.33400 -15.93272 -15.29300 -14.88854 -14.51568 -14.19006 -13.68366 -13.26152 -13.17284 -13.16576 -12.70415 -12.44742 -12.33586 -12.16451 -11.81268 -11.76947 -11.39048 -11.25220 -11.05503 -10.94485 -10.85314 -10.74894 -10.48363 -10.31313 -9.94422 -9.80875 -9.57447 -9.11959 -8.80244 -8.41813 -8.36069 -6.00599 -4.04358 2.09417 2.51971 3.29922 3.30881 3.37988 3.40404 3.77239 4.43615 4.65381 4.78124 4.88262 4.96593 5.02372 5.12997 5.23669 5.28596 5.34708 5.36063 5.44884 5.48952 5.53592 5.59203 5.66752 5.79636 5.81821 5.89848 6.04250 6.05932 6.10682 6.25752 6.35157 6.61643 6.69954 6.82505 6.92260 7.05668 7.47053 7.62070 7.78560 7.98684 8.34527 9.01276 9.19611 9.59224 11.10504 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.040713 B = 0.003823 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.577751 B = 7323.283537 C = 7424.734244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.068 3.932 4 N -0.465 5.465 5 C 0.033 3.967 6 C 0.315 3.685 7 N -0.312 5.312 8 N -0.287 5.287 9 C 0.218 3.782 10 C -0.003 4.003 11 H 0.073 0.927 12 C -0.125 4.125 13 C 0.038 3.962 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 N -0.471 5.471 23 C 0.081 3.919 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.032 0.968 38 H 0.013 0.987 39 H 0.261 0.739 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.704 -15.689 3.171 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.059 4.059 4 N -0.190 5.190 5 C -0.115 4.115 6 C -0.041 4.041 7 N -0.157 5.157 8 N -0.126 5.126 9 C -0.049 4.049 10 C -0.024 4.024 11 H 0.091 0.909 12 C -0.183 4.183 13 C 0.000 4.000 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.198 1.198 22 N -0.164 5.164 23 C -0.062 4.062 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.012 -15.075 2.341 20.051 hybrid contribution 1.100 0.009 0.878 1.408 sum -11.912 -15.066 3.220 19.474 Atomic orbital electron populations 1.21721 0.95255 1.01803 1.02095 1.21554 0.95699 0.95762 1.02781 1.22202 0.83891 0.97553 1.02297 1.58621 1.09342 1.14336 1.36749 1.22457 1.00715 0.99810 0.88500 1.22173 0.98090 0.92631 0.91221 1.74517 1.21547 0.96033 1.23570 1.74052 1.09779 1.20725 1.08054 1.25687 1.00079 0.81192 0.97977 1.20013 0.93891 0.93042 0.95438 0.90874 1.21670 0.98189 0.97882 1.00594 1.19108 0.90534 0.95697 0.94631 1.21142 1.09473 1.31316 0.93971 0.92301 1.25008 0.97809 0.96564 0.94911 1.69983 1.29199 1.43409 1.10324 0.86597 0.81115 0.79797 0.80498 1.20759 1.21220 1.19784 1.46272 1.36418 1.09737 1.23986 1.21970 0.99994 0.94998 0.89241 0.92572 0.92391 0.92613 0.91607 0.91142 0.90835 0.92864 0.91287 0.90104 0.93663 0.94994 0.90610 0.92049 0.94946 0.96843 0.92913 0.90616 0.89009 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.15 0.37 -0.70 16 2 C -0.12 -0.98 5.86 -26.74 -0.16 -1.14 16 3 C 0.07 0.77 4.83 -3.82 -0.02 0.75 16 4 N -0.47 -6.10 4.73 -182.39 -0.86 -6.96 16 5 C 0.03 0.38 9.22 60.06 0.55 0.93 16 6 C 0.32 5.40 6.41 -318.88 -2.04 3.35 16 7 N -0.31 -6.41 12.14 30.31 0.37 -6.05 16 8 N -0.29 -6.46 12.18 32.99 0.40 -6.05 16 9 C 0.22 4.43 6.58 -154.01 -1.01 3.42 16 10 C 0.00 -0.06 2.71 -91.77 -0.25 -0.30 16 11 H 0.07 1.37 7.10 -51.93 -0.37 1.00 16 12 C -0.13 -2.39 8.99 37.16 0.33 -2.06 16 13 C 0.04 0.99 4.43 -27.88 -0.12 0.87 16 14 C -0.52 -14.14 8.41 -34.44 -0.29 -14.43 16 15 H 0.06 1.51 7.05 -52.49 -0.37 1.14 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 18 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 N -0.47 -8.02 3.21 -121.46 -0.39 -8.41 16 23 C 0.08 0.98 10.80 59.85 0.65 1.63 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.49 6.60 -51.92 -0.34 0.15 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 30 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.08 0.69 6.58 -51.93 -0.34 0.34 16 33 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.45 6.95 -51.93 -0.36 1.09 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 42 H 0.09 1.08 7.51 -51.93 -0.39 0.69 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -32.83 343.86 -8.89 -41.72 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -7.22 Total: -3.48 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.09 Total: -6.12 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.25 Total: -53.49 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.83 -8.89 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121420264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.263 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds