Wall clock time and date at job start Mon Mar 30 2020 00:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47329 * 2 1 4 4 N 1.46902 * 109.47204 * 180.02562 * 3 2 1 5 5 C 1.46893 * 111.00308 * 66.04467 * 4 3 2 6 6 C 1.38582 * 110.99787 * 190.00039 * 4 3 2 7 7 N 1.31210 * 126.47451 * 302.90171 * 6 4 3 8 8 N 1.28526 * 109.86412 * 179.69799 * 7 6 4 9 9 C 1.30296 * 110.05070 * 0.44822 * 8 7 6 10 10 C 1.50704 * 126.34928 * 179.82243 * 9 8 7 11 11 H 1.09001 * 109.47349 * 179.68874 * 10 9 8 12 12 C 1.52999 * 109.46975 * 59.69136 * 10 9 8 13 13 C 1.53002 * 109.46860 * 299.69398 * 10 9 8 14 14 C 1.50707 * 109.46639 * 184.99943 * 13 10 9 15 15 H 1.07997 * 119.99927 * 359.97438 * 14 13 10 16 16 C 1.37878 * 119.99620 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99985 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99687 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47253 * 89.99750 * 18 16 14 20 20 H 1.48499 * 109.47184 * 209.99549 * 18 16 14 21 21 H 1.48503 * 109.47328 * 329.99796 * 18 16 14 22 22 N 1.36455 * 126.47191 * 122.86211 * 6 4 3 23 23 C 1.46500 * 127.13799 * 0.02562 * 22 6 4 24 24 H 1.09000 * 109.47279 * 60.00192 * 1 2 3 25 25 H 1.08996 * 109.47499 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47102 * 299.99890 * 1 2 3 27 27 H 1.09008 * 109.47125 * 240.00057 * 2 1 3 28 28 H 1.08998 * 109.47530 * 120.00280 * 2 1 3 29 29 H 1.08998 * 109.46938 * 60.00010 * 3 2 1 30 30 H 1.09002 * 109.47239 * 299.99856 * 3 2 1 31 31 H 1.09002 * 109.47055 * 177.59330 * 5 4 3 32 32 H 1.09003 * 109.47004 * 297.59337 * 5 4 3 33 33 H 1.08995 * 109.47379 * 57.59449 * 5 4 3 34 34 H 1.09003 * 109.47071 * 59.99523 * 12 10 9 35 35 H 1.09004 * 109.47205 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47391 * 300.00013 * 12 10 9 37 37 H 1.08992 * 109.47300 * 65.00182 * 13 10 9 38 38 H 1.08998 * 109.47130 * 304.99135 * 13 10 9 39 39 H 0.97000 * 119.99698 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.47376 * 263.83838 * 23 22 6 41 41 H 1.09005 * 109.46676 * 23.83877 * 23 22 6 42 42 H 1.09002 * 109.46917 * 143.83344 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0350 0.8858 -1.2541 6 6 4.0057 2.7165 0.2240 7 7 3.7499 3.7899 -0.4860 8 7 4.3728 4.7994 0.0087 9 6 5.0648 4.4312 1.0494 10 6 5.9331 5.3182 1.9041 11 1 6.3801 4.7275 2.7037 12 6 5.0808 6.4348 2.5104 13 6 7.0394 5.9312 1.0432 14 6 7.9791 6.7191 1.9192 15 1 7.8044 6.7771 2.9834 16 6 9.0612 7.3667 1.3618 17 7 9.2736 7.2964 0.0658 18 14 10.2256 8.3440 2.4475 19 1 11.3173 7.4581 2.9257 20 1 10.8051 9.4666 1.6671 21 1 9.4800 8.8839 3.6128 22 7 4.8527 3.0919 1.2259 23 6 5.4174 2.2375 2.2734 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.1237 0.9369 -1.2458 32 1 3.7207 -0.1535 -1.3502 33 1 3.6507 1.4609 -2.0965 34 1 4.2926 5.9981 3.1236 35 1 5.7089 7.0766 3.1282 36 1 4.6338 7.0256 1.7108 37 1 6.5962 6.5925 0.2988 38 1 7.5913 5.1367 0.5409 39 1 10.0351 7.7518 -0.3262 40 1 4.8102 2.3184 3.1749 41 1 5.4255 1.2021 1.9325 42 1 6.4366 2.5560 2.4919 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121420264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:04 Heat of formation + Delta-G solvation = 48.537842 kcal Electronic energy + Delta-G solvation = -20587.796485 eV Core-core repulsion = 17603.208977 eV Total energy + Delta-G solvation = -2984.587508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.02534 -39.05612 -37.04551 -35.83988 -34.45242 -33.91256 -30.31823 -28.90200 -28.45503 -28.11244 -26.06287 -25.78942 -23.78809 -22.30674 -21.61781 -20.59935 -18.63834 -18.07884 -17.60511 -17.17964 -16.50802 -16.28610 -15.95846 -15.57295 -14.98879 -14.65811 -14.41691 -14.18933 -13.94676 -13.79834 -13.58444 -13.24559 -12.96534 -12.91340 -12.82716 -12.74468 -12.59483 -12.43714 -12.26305 -12.07499 -11.97401 -11.62465 -11.52906 -11.43927 -11.18639 -11.04640 -10.54894 -10.03313 -9.90932 -8.16318 -6.28190 0.69938 1.25310 1.44268 1.46069 1.56905 1.76404 2.43958 2.67960 3.17870 3.43574 3.73889 3.84354 3.97803 4.07719 4.14029 4.30681 4.36449 4.41180 4.42296 4.51120 4.54733 4.57959 4.65194 4.69592 4.74382 4.84672 4.94920 5.03126 5.08973 5.16685 5.18705 5.25822 5.35868 5.40574 5.45079 5.55322 5.64767 5.68988 5.83480 6.18305 6.21584 6.87782 7.41184 7.70053 8.96322 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.040713 B = 0.003823 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.577751 B = 7323.283537 C = 7424.734244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C 0.068 3.932 4 N -0.456 5.456 5 C 0.032 3.968 6 C 0.333 3.667 7 N -0.351 5.351 8 N -0.330 5.330 9 C 0.203 3.797 10 C 0.008 3.992 11 H 0.099 0.901 12 C -0.117 4.117 13 C 0.050 3.950 14 C -0.528 4.528 15 H 0.078 0.922 16 C -0.003 4.003 17 N -0.938 5.938 18 Si 0.968 3.032 19 H -0.272 1.272 20 H -0.290 1.290 21 H -0.256 1.256 22 N -0.468 5.468 23 C 0.072 3.928 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.031 0.969 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.039 0.961 37 H -0.011 1.011 38 H -0.022 1.022 39 H 0.262 0.738 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.073 -17.639 5.521 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.059 4.059 4 N -0.182 5.182 5 C -0.115 4.115 6 C -0.025 4.025 7 N -0.195 5.195 8 N -0.169 5.169 9 C -0.066 4.066 10 C -0.013 4.013 11 H 0.117 0.883 12 C -0.176 4.176 13 C 0.012 3.988 14 C -0.566 4.566 15 H 0.096 0.904 16 C -0.201 4.201 17 N -0.578 5.578 18 Si 0.792 3.208 19 H -0.197 1.197 20 H -0.216 1.216 21 H -0.180 1.180 22 N -0.160 5.160 23 C -0.069 4.069 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.138 0.862 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.007 0.993 38 H -0.003 1.003 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.395 -17.049 4.721 22.190 hybrid contribution 1.154 0.502 0.093 1.262 sum -12.241 -16.547 4.813 21.138 Atomic orbital electron populations 1.21721 0.94398 1.02781 1.01864 1.21510 0.96295 0.93202 1.03711 1.22295 0.82581 0.99822 1.01168 1.58979 1.10340 1.11431 1.37409 1.22561 1.00164 1.01602 0.87152 1.22659 0.96498 0.93340 0.89968 1.74421 1.23069 0.96870 1.25171 1.73937 1.11111 1.22516 1.09382 1.25439 1.00468 0.82736 0.97917 1.19787 0.92698 0.93801 0.95001 0.88324 1.21584 0.98652 0.97208 1.00107 1.18849 0.91684 0.93960 0.94279 1.21582 1.09329 1.30747 0.94926 0.90382 1.26033 0.99957 0.97853 0.96219 1.70157 1.30124 1.44868 1.12677 0.85406 0.78748 0.77942 0.78708 1.19702 1.21584 1.17951 1.46473 1.35928 1.08956 1.24626 1.22377 1.00400 0.95185 0.88967 0.92927 0.90768 0.92829 0.90454 0.90311 0.91798 0.94294 0.92173 0.86229 0.95005 0.91892 0.90572 0.94202 0.99286 1.00320 0.92977 0.87999 0.86889 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 71.98 0.71 -1.05 16 2 C -0.11 -1.48 5.86 30.59 0.18 -1.30 16 3 C 0.07 1.45 4.83 86.30 0.42 1.87 16 4 N -0.46 -11.23 4.73 -730.94 -3.46 -14.69 16 5 C 0.03 0.69 9.22 127.69 1.18 1.87 16 6 C 0.33 11.28 6.41 260.11 1.67 12.95 16 7 N -0.35 -14.86 12.14 -58.01 -0.70 -15.57 16 8 N -0.33 -15.47 12.18 -49.53 -0.60 -16.07 16 9 C 0.20 8.38 6.58 137.64 0.91 9.28 16 10 C 0.01 0.33 2.71 -11.54 -0.03 0.30 16 11 H 0.10 3.53 7.10 -2.39 -0.02 3.51 16 12 C -0.12 -4.42 8.99 71.98 0.65 -3.77 16 13 C 0.05 2.71 4.43 29.85 0.13 2.84 16 14 C -0.53 -28.83 8.41 25.60 0.22 -28.61 16 15 H 0.08 3.88 7.05 -2.91 -0.02 3.86 16 16 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 17 N -0.94 -58.16 13.29 21.45 0.28 -57.88 16 18 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 22 N -0.47 -15.51 3.21 -538.18 -1.73 -17.23 16 23 C 0.07 1.55 10.80 127.77 1.38 2.93 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.08 0.89 6.60 -2.38 -0.02 0.87 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 1.48 8.05 -2.39 -0.02 1.46 16 30 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 31 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 32 H 0.12 1.64 6.58 -2.39 -0.02 1.62 16 33 H 0.03 0.77 8.12 -2.39 -0.02 0.75 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 2.82 6.95 -2.39 -0.02 2.81 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.11 1.97 8.09 -2.38 -0.02 1.95 16 42 H 0.09 2.00 7.51 -2.39 -0.02 1.98 16 Total: -1.00 -74.63 343.86 4.66 -69.97 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.98 Total: 8.46 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 7.86 Total: -2.42 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -6.21 Total: -121.44 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -74.63 4.66 -69.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121420264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.508 kcal (2) G-P(sol) polarization free energy of solvation -74.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds