Wall clock time and date at job start Mon Mar 30 2020 00:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47350 * 2 1 4 4 C 1.38588 * 110.99791 * 75.21718 * 3 2 1 5 5 N 1.31214 * 126.47053 * 60.57708 * 4 3 2 6 6 N 1.28531 * 109.85704 * 179.97438 * 5 4 3 7 7 C 1.30299 * 110.05296 * 359.97438 * 6 5 4 8 8 C 1.50699 * 126.34562 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47073 * 90.03192 * 8 7 6 10 10 C 1.50697 * 109.47346 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99802 * 359.97438 * 10 9 8 12 12 C 1.37870 * 120.00083 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00016 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 119.99918 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47074 * 90.00140 * 14 12 10 16 16 H 1.48496 * 109.46792 * 209.99663 * 14 12 10 17 17 H 1.48499 * 109.47125 * 329.99741 * 14 12 10 18 18 N 1.36455 * 126.47074 * 240.86084 * 4 3 2 19 19 C 1.46497 * 127.13810 * 0.02562 * 18 4 3 20 20 C 1.46895 * 111.00011 * 199.17168 * 3 2 1 21 21 C 1.52999 * 109.46945 * 65.61029 * 20 3 2 22 22 C 1.52998 * 109.46872 * 185.61151 * 20 3 2 23 23 H 1.09000 * 109.47295 * 181.15464 * 1 2 3 24 24 H 1.09003 * 109.47235 * 301.15237 * 1 2 3 25 25 H 1.09003 * 109.47059 * 61.14878 * 1 2 3 26 26 H 1.08997 * 109.46832 * 239.99724 * 2 1 3 27 27 H 1.09002 * 109.46713 * 119.99698 * 2 1 3 28 28 H 1.09001 * 109.47223 * 330.02518 * 8 7 6 29 29 H 1.09006 * 109.47248 * 210.02686 * 8 7 6 30 30 H 1.08993 * 109.47160 * 59.99174 * 9 8 7 31 31 H 1.09006 * 109.46670 * 299.99848 * 9 8 7 32 32 H 0.96998 * 119.99894 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.47082 * 273.40978 * 19 18 4 34 34 H 1.09006 * 109.47374 * 33.40616 * 19 18 4 35 35 H 1.08996 * 109.47091 * 153.40660 * 19 18 4 36 36 H 1.09001 * 109.47055 * 305.60926 * 20 3 2 37 37 H 1.08997 * 109.47178 * 54.21286 * 21 20 3 38 38 H 1.09005 * 109.46992 * 174.20539 * 21 20 3 39 39 H 1.08991 * 109.47405 * 294.20803 * 21 20 3 40 40 H 1.09007 * 109.46824 * 180.02562 * 22 20 3 41 41 H 1.08994 * 109.47426 * 299.99542 * 22 20 3 42 42 H 1.08997 * 109.47443 * 60.00019 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8741 1.9632 1.2510 5 7 2.4239 1.5520 2.3692 6 7 2.0748 2.3228 3.3367 7 6 1.2885 3.2640 2.8966 8 6 0.6655 4.3637 3.7174 9 6 1.6003 5.5748 3.7406 10 6 0.9777 6.6743 4.5619 11 1 0.0116 6.5244 5.0210 12 6 1.6413 7.8714 4.7272 13 7 2.8179 8.0537 4.1686 14 14 0.8691 9.2346 5.7446 15 1 1.2876 9.0919 7.1622 16 1 1.3162 10.5526 5.2268 17 1 -0.6103 9.1429 5.6536 18 7 1.1274 3.0646 1.5535 19 6 0.3234 3.8690 0.6301 20 6 3.4165 1.4495 -0.4504 21 6 3.4993 1.0242 -1.9177 22 6 3.9336 2.8820 -0.3045 23 1 -0.3634 -1.0274 0.0207 24 1 -0.3634 0.5316 0.8795 25 1 -0.3633 0.4959 -0.9001 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5036 4.0100 4.7356 29 1 -0.2892 4.6501 3.2761 30 1 1.7622 5.9284 2.7225 31 1 2.5550 5.2883 4.1819 32 1 3.2845 8.8961 4.2846 33 1 0.9519 4.6324 0.1715 34 1 -0.0913 3.2255 -0.1459 35 1 -0.4885 4.3475 1.1775 36 1 4.0253 0.7798 0.1570 37 1 2.8118 1.6278 -2.5103 38 1 4.5165 1.1698 -2.2813 39 1 3.2287 -0.0278 -2.0070 40 1 4.9700 2.9299 -0.6391 41 1 3.3249 3.5517 -0.9118 42 1 3.8746 3.1850 0.7408 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121494375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:50 Heat of formation + Delta-G solvation = 71.288850 kcal Electronic energy + Delta-G solvation = -21058.886875 eV Core-core repulsion = 18075.285925 eV Total energy + Delta-G solvation = -2983.600950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.58443 -38.44690 -34.75811 -33.88171 -33.15907 -31.84097 -30.12047 -27.96670 -27.35372 -27.02091 -25.18708 -22.97515 -21.88579 -21.67664 -20.01523 -19.49489 -17.12167 -16.76121 -16.28027 -15.63389 -15.21887 -14.68771 -14.49427 -14.17889 -13.63444 -13.21522 -13.11678 -12.93270 -12.64999 -12.46160 -12.29050 -12.22609 -12.20910 -11.75768 -11.41306 -11.28079 -11.17327 -11.06571 -10.98815 -10.87044 -10.67621 -10.31549 -9.96367 -9.84500 -9.65472 -9.22891 -8.72189 -8.41199 -8.35430 -6.05499 -4.09690 2.15255 2.58578 3.29832 3.30300 3.36433 3.38884 3.76681 4.41125 4.64894 4.83503 4.94515 4.99583 5.07537 5.13889 5.21416 5.30646 5.35428 5.36042 5.46361 5.51730 5.54712 5.59733 5.66140 5.72781 5.79108 5.85057 5.93632 6.03441 6.16697 6.21476 6.36303 6.39628 6.47961 6.70152 6.76292 7.00116 7.53644 7.56124 7.69373 7.91945 8.29531 8.96431 9.21388 9.55007 11.05628 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.030219 B = 0.004433 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.332154 B = 6314.449646 C = 6662.315644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 N -0.461 5.461 4 C 0.330 3.670 5 N -0.317 5.317 6 N -0.299 5.299 7 C 0.213 3.787 8 C -0.031 4.031 9 C 0.033 3.967 10 C -0.524 4.524 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.894 3.106 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.273 1.273 18 N -0.467 5.467 19 C 0.084 3.916 20 C 0.089 3.911 21 C -0.142 4.142 22 C -0.148 4.148 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.014 0.986 31 H 0.025 0.975 32 H 0.262 0.738 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -13.050 -13.696 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 N -0.188 5.188 4 C -0.026 4.026 5 N -0.161 5.161 6 N -0.139 5.139 7 C -0.055 4.055 8 C -0.071 4.071 9 C -0.006 4.006 10 C -0.562 4.562 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.531 5.531 14 Si 0.722 3.278 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.198 1.198 18 N -0.159 5.159 19 C -0.060 4.060 20 C -0.019 4.019 21 C -0.200 4.200 22 C -0.206 4.206 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.943 -13.489 -13.128 19.052 hybrid contribution -0.614 1.267 0.073 1.410 sum -3.558 -12.222 -13.056 18.234 Atomic orbital electron populations 1.21747 0.94755 1.01626 1.02194 1.22221 0.96174 0.86500 1.02265 1.58813 1.21994 1.19224 1.18748 1.22019 0.97621 0.90700 0.92241 1.74455 1.22064 1.23508 0.96109 1.74042 1.13615 1.03787 1.22411 1.25602 0.99343 0.99494 0.81014 1.20446 0.98681 0.91035 0.96959 1.19058 0.94483 0.89601 0.97429 1.21140 1.04688 0.98446 1.31968 0.92307 1.25005 0.94839 0.98602 0.95754 1.69974 1.13745 1.25323 1.44053 0.86561 0.79508 0.81245 0.80498 1.20526 1.21241 1.19799 1.46206 1.37293 1.23079 1.09352 1.21952 0.95568 0.95425 0.93009 1.21669 0.85728 0.98204 0.96252 1.21887 1.02262 1.01242 0.94603 1.21880 1.00957 0.95133 1.02634 0.91928 0.93112 0.91991 0.89597 0.92766 0.89357 0.91246 0.96744 0.95685 0.92878 0.90299 0.89519 0.89172 0.92505 0.91576 0.91644 0.92475 0.91550 0.91992 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.02 37.16 0.37 -1.11 16 2 C 0.06 0.62 5.55 -3.82 -0.02 0.60 16 3 N -0.46 -6.04 4.36 -166.94 -0.73 -6.77 16 4 C 0.33 5.54 3.91 -318.86 -1.25 4.30 16 5 N -0.32 -6.37 11.92 30.32 0.36 -6.01 16 6 N -0.30 -6.56 12.18 32.99 0.40 -6.16 16 7 C 0.21 4.27 7.32 -154.02 -1.13 3.15 16 8 C -0.03 -0.64 5.52 -27.88 -0.15 -0.80 16 9 C 0.03 0.83 4.95 -27.88 -0.14 0.69 16 10 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 11 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 14 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 N -0.47 -7.92 3.21 -121.46 -0.39 -8.31 16 19 C 0.08 1.09 11.08 59.85 0.66 1.75 16 20 C 0.09 1.07 2.64 -67.72 -0.18 0.90 16 21 C -0.14 -1.23 9.02 37.16 0.34 -0.90 16 22 C -0.15 -2.00 8.88 37.16 0.33 -1.67 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.75 5.96 -51.93 -0.31 0.44 16 27 H 0.05 0.71 7.74 -51.93 -0.40 0.30 16 28 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 29 H 0.07 1.26 7.20 -51.93 -0.37 0.89 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.09 7.15 -51.93 -0.37 0.72 16 36 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.43 6.48 -51.93 -0.34 0.09 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 1.00 7.00 -51.93 -0.36 0.64 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -32.34 342.21 -8.23 -40.56 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -7.17 Total: -2.69 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.58 Total: -6.16 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.38 Total: -53.03 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.34 -8.23 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121494375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.853 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds